Wall clock time and date at job start Tue Mar 31 2020 11:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99423 * 2 1 4 4 H 1.48504 * 109.46923 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47463 * 300.00225 * 3 2 1 6 6 H 1.48500 * 109.47286 * 60.00351 * 3 2 1 7 7 C 1.37872 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99408 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00475 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47338 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99939 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99923 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99815 * 180.02562 * 11 10 9 14 14 C 1.53000 * 109.46801 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.47398 * 305.00045 * 14 13 11 16 16 O 1.42896 * 109.47231 * 65.00111 * 14 13 11 17 17 C 1.50703 * 109.46912 * 184.99967 * 14 13 11 18 18 C 1.38225 * 119.98456 * 279.73127 * 17 14 13 19 19 C 1.38359 * 120.00757 * 179.72885 * 18 17 14 20 20 Cl 1.73601 * 120.00458 * 180.26806 * 19 18 17 21 21 C 1.38328 * 119.99000 * 0.51882 * 19 18 17 22 22 C 1.38334 * 119.97274 * 359.75230 * 21 19 18 23 23 Cl 1.73599 * 120.00462 * 180.02562 * 22 21 19 24 24 C 1.38220 * 119.98614 * 100.00430 * 17 14 13 25 25 H 0.96998 * 120.00474 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46447 * 60.00235 * 9 7 2 27 27 H 1.09000 * 109.46929 * 300.00769 * 9 7 2 28 28 H 0.96998 * 119.99759 * 0.02562 * 10 9 7 29 29 H 1.09002 * 109.47083 * 60.00009 * 13 11 10 30 30 H 1.08991 * 109.46995 * 300.00066 * 13 11 10 31 31 H 0.96708 * 114.00101 * 59.99127 * 16 14 13 32 32 H 1.07994 * 119.99345 * 359.97438 * 18 17 14 33 33 H 1.07999 * 120.01384 * 179.76819 * 21 19 18 34 34 H 1.08002 * 119.99447 * 359.97438 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2033 -3.6126 -0.0005 11 6 1.7541 -4.8833 -0.0011 12 8 0.5617 -5.1049 -0.0011 13 6 2.7335 -6.0287 -0.0005 14 6 1.9685 -7.3537 -0.0006 15 1 1.2760 -7.3736 0.8409 16 8 1.2378 -7.4818 -1.2219 17 6 2.9432 -8.4964 0.1238 18 6 3.6331 -8.9401 -0.9887 19 6 4.5322 -9.9855 -0.8739 20 17 5.4038 -10.5381 -2.2699 21 6 4.7326 -10.5936 0.3522 22 6 4.0377 -10.1527 1.4641 23 17 4.2891 -10.9148 3.0035 24 6 3.1426 -9.1039 1.3492 25 1 -0.4851 0.8400 0.0004 26 1 0.6243 -2.5567 -0.8904 27 1 0.6248 -2.5571 0.8896 28 1 3.1569 -3.4352 -0.0002 29 1 3.3595 -5.9710 0.8900 30 1 3.3608 -5.9707 -0.8899 31 1 1.7917 -7.4719 -2.0146 32 1 3.4732 -8.4682 -1.9468 33 1 5.4316 -11.4121 0.4415 34 1 2.6003 -8.7594 2.2173 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787621576.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:59 Heat of formation + Delta-G solvation = -88.857036 kcal Electronic energy + Delta-G solvation = -20754.334839 eV Core-core repulsion = 17124.339020 eV Total energy + Delta-G solvation = -3629.995819 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.37436 -38.90650 -37.24489 -37.16017 -36.28302 -34.16476 -32.48763 -32.22722 -31.06282 -30.10618 -27.23087 -24.86287 -23.26981 -22.57714 -21.45169 -19.73029 -18.33712 -17.13851 -16.68093 -16.28772 -16.03812 -15.59181 -15.31777 -15.06730 -14.73022 -14.51292 -14.10718 -13.87890 -13.77306 -12.80096 -12.75283 -12.62877 -12.35418 -12.13844 -12.00444 -11.80830 -11.52734 -11.41919 -11.36245 -11.07603 -10.97501 -10.91259 -10.37110 -10.28894 -9.39791 -9.36182 -9.17576 -8.99364 -8.75650 -7.89526 -6.18466 -4.25554 0.53298 0.57020 1.38805 1.84199 2.93183 3.21919 3.29111 3.31946 3.34430 3.82686 4.22403 4.31662 4.38745 4.49740 4.52508 4.66371 4.75954 4.90270 5.02120 5.15164 5.17988 5.48543 5.53109 5.59863 5.62597 5.70689 6.00824 6.08134 7.29033 7.41931 7.50326 7.55048 7.64383 7.95394 8.60360 8.76345 9.08724 9.41362 10.91738 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.018100 B = 0.002492 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.606164 B =11233.827406 C =11736.838359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.715 5.715 11 C 0.498 3.502 12 O -0.540 6.540 13 C -0.173 4.173 14 C 0.168 3.832 15 H 0.121 0.879 16 O -0.531 6.531 17 C -0.085 4.085 18 C -0.099 4.099 19 C -0.020 4.020 20 Cl -0.057 7.057 21 C -0.106 4.106 22 C -0.021 4.021 23 Cl -0.056 7.056 24 C -0.094 4.094 25 H 0.265 0.735 26 H 0.027 0.973 27 H 0.026 0.974 28 H 0.389 0.611 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.367 0.633 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.559 -22.721 0.333 25.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.129 3.871 10 N -0.363 5.363 11 C 0.281 3.719 12 O -0.418 6.418 13 C -0.214 4.214 14 C 0.108 3.892 15 H 0.139 0.861 16 O -0.335 6.335 17 C -0.086 4.086 18 C -0.117 4.117 19 C -0.047 4.047 20 Cl -0.028 7.028 21 C -0.126 4.126 22 C -0.048 4.048 23 Cl -0.027 7.027 24 C -0.113 4.113 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.222 0.778 29 H 0.118 0.882 30 H 0.111 0.889 31 H 0.214 0.786 32 H 0.158 0.842 33 H 0.162 0.838 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 11.107 -22.864 0.755 25.430 hybrid contribution 1.648 0.920 -0.316 1.914 sum 12.755 -21.944 0.440 25.385 Atomic orbital electron populations 1.69984 1.06105 1.27217 1.48924 1.24958 0.94913 0.99474 0.94708 0.86368 0.79815 0.82986 0.77775 1.19643 1.20788 1.20786 1.21261 0.93268 0.90482 1.53154 0.91894 1.19098 0.88301 0.81963 0.97739 1.46472 1.11046 1.06167 1.72655 1.20175 0.89369 0.84185 0.78127 1.90716 1.16506 1.84640 1.49938 1.22465 0.99385 0.94546 1.05006 1.20559 0.90874 0.87786 0.90011 0.86110 1.86826 1.36364 1.95792 1.14523 1.20676 0.97469 0.97971 0.92510 1.20920 0.95088 0.95937 0.99792 1.20675 0.97574 0.97787 0.88655 1.98399 1.75092 1.88948 1.40340 1.20895 1.00699 1.01087 0.89874 1.20722 0.99584 0.97003 0.87458 1.98399 1.95893 1.80704 1.27749 1.21069 0.97361 0.94403 0.98479 0.92477 0.95526 0.95578 0.77823 0.88247 0.88865 0.78629 0.84203 0.83834 0.83760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.93 13.29 55.43 0.74 -25.20 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.54 -14.55 9.28 -34.44 -0.32 -14.87 16 8 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 9 C 0.25 6.52 5.43 -5.20 -0.03 6.49 16 10 N -0.71 -14.41 5.55 -61.47 -0.34 -14.75 16 11 C 0.50 9.25 7.71 -10.98 -0.08 9.17 16 12 O -0.54 -12.52 15.42 -8.85 -0.14 -12.65 16 13 C -0.17 -2.08 5.36 -27.88 -0.15 -2.23 16 14 C 0.17 1.96 2.75 -27.88 -0.08 1.88 16 15 H 0.12 1.57 7.82 -51.93 -0.41 1.16 16 16 O -0.53 -7.06 12.42 -49.64 -0.62 -7.67 16 17 C -0.09 -0.79 4.97 -104.63 -0.52 -1.31 16 18 C -0.10 -0.83 9.11 -39.54 -0.36 -1.19 16 19 C -0.02 -0.17 6.32 -39.50 -0.25 -0.42 16 20 Cl -0.06 -0.45 28.96 -51.86 -1.50 -1.95 16 21 C -0.11 -0.86 9.62 -39.51 -0.38 -1.24 16 22 C -0.02 -0.18 6.32 -39.50 -0.25 -0.43 16 23 Cl -0.06 -0.46 28.96 -51.86 -1.50 -1.97 16 24 C -0.09 -0.84 9.45 -39.54 -0.37 -1.21 16 25 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.39 6.66 8.32 -40.82 -0.34 6.32 16 29 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.37 3.39 7.50 45.56 0.34 3.73 16 32 H 0.14 0.94 6.77 -52.49 -0.36 0.59 16 33 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 34 H 0.14 1.14 8.04 -52.49 -0.42 0.71 16 LS Contribution 332.19 15.07 5.01 5.01 Total: -1.00 -32.91 332.19 -9.09 -42.00 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -2.83 Total: 5.28 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -2.89 Total: -3.73 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.40 Total: -39.94 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.75 Total: -20.32 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -3.00 Total: -3.92 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.91 -9.09 -42.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787621576.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.857 kcal (2) G-P(sol) polarization free energy of solvation -32.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds