Wall clock time and date at job start Tue Mar 31 2020 11:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99423 * 2 1 4 4 H 1.48504 * 109.46923 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47463 * 300.00225 * 3 2 1 6 6 H 1.48500 * 109.47286 * 60.00351 * 3 2 1 7 7 C 1.37872 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99408 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00475 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47338 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99939 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99923 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99815 * 180.02562 * 11 10 9 14 14 C 1.53000 * 109.46801 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.47398 * 305.00045 * 14 13 11 16 16 O 1.42896 * 109.47231 * 65.00111 * 14 13 11 17 17 C 1.50703 * 109.46912 * 184.99967 * 14 13 11 18 18 C 1.38225 * 119.98456 * 279.73127 * 17 14 13 19 19 C 1.38359 * 120.00757 * 179.72885 * 18 17 14 20 20 Cl 1.73601 * 120.00458 * 180.26806 * 19 18 17 21 21 C 1.38328 * 119.99000 * 0.51882 * 19 18 17 22 22 C 1.38334 * 119.97274 * 359.75230 * 21 19 18 23 23 Cl 1.73599 * 120.00462 * 180.02562 * 22 21 19 24 24 C 1.38220 * 119.98614 * 100.00430 * 17 14 13 25 25 H 0.96998 * 120.00474 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46447 * 60.00235 * 9 7 2 27 27 H 1.09000 * 109.46929 * 300.00769 * 9 7 2 28 28 H 0.96998 * 119.99759 * 0.02562 * 10 9 7 29 29 H 1.09002 * 109.47083 * 60.00009 * 13 11 10 30 30 H 1.08991 * 109.46995 * 300.00066 * 13 11 10 31 31 H 0.96708 * 114.00101 * 59.99127 * 16 14 13 32 32 H 1.07994 * 119.99345 * 359.97438 * 18 17 14 33 33 H 1.07999 * 120.01384 * 179.76819 * 21 19 18 34 34 H 1.08002 * 119.99447 * 359.97438 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2033 -3.6126 -0.0005 11 6 1.7541 -4.8833 -0.0011 12 8 0.5617 -5.1049 -0.0011 13 6 2.7335 -6.0287 -0.0005 14 6 1.9685 -7.3537 -0.0006 15 1 1.2760 -7.3736 0.8409 16 8 1.2378 -7.4818 -1.2219 17 6 2.9432 -8.4964 0.1238 18 6 3.6331 -8.9401 -0.9887 19 6 4.5322 -9.9855 -0.8739 20 17 5.4038 -10.5381 -2.2699 21 6 4.7326 -10.5936 0.3522 22 6 4.0377 -10.1527 1.4641 23 17 4.2891 -10.9148 3.0035 24 6 3.1426 -9.1039 1.3492 25 1 -0.4851 0.8400 0.0004 26 1 0.6243 -2.5567 -0.8904 27 1 0.6248 -2.5571 0.8896 28 1 3.1569 -3.4352 -0.0002 29 1 3.3595 -5.9710 0.8900 30 1 3.3608 -5.9707 -0.8899 31 1 1.7917 -7.4719 -2.0146 32 1 3.4732 -8.4682 -1.9468 33 1 5.4316 -11.4121 0.4415 34 1 2.6003 -8.7594 2.2173 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787621576.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:58 Heat of formation + Delta-G solvation = -111.513591 kcal Electronic energy + Delta-G solvation = -20755.317301 eV Core-core repulsion = 17124.339020 eV Total energy + Delta-G solvation = -3630.978281 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.22964 -40.24802 -38.17923 -37.78672 -37.03938 -36.05664 -34.33373 -33.21998 -31.71028 -31.18780 -29.06459 -26.00400 -24.34411 -23.90879 -22.37379 -21.31018 -19.36268 -18.61225 -17.55062 -17.44517 -17.22162 -16.84693 -16.59483 -16.41554 -15.81844 -15.52748 -15.14065 -15.04438 -14.87983 -14.39310 -13.96975 -13.93802 -13.37534 -13.29379 -12.97162 -12.87826 -12.80268 -12.66406 -12.56604 -12.21911 -12.19895 -11.98366 -11.84019 -11.45037 -11.25064 -10.80599 -10.70285 -9.94709 -9.81591 -9.77490 -8.28460 -6.44912 -0.11180 -0.09654 0.75690 1.21114 1.43870 1.44708 1.58142 1.85022 2.23276 2.34884 2.61162 3.06612 3.34708 3.50277 3.72615 3.87338 3.88565 3.99029 4.04480 4.27323 4.33450 4.46699 4.64499 4.78640 4.91385 4.99102 5.15337 5.24805 5.27242 5.39153 5.51617 5.72730 5.87199 6.67393 6.79144 6.96405 7.25114 7.57013 8.83934 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.018100 B = 0.002492 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.606164 B =11233.827406 C =11736.838359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.984 3.016 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.266 3.734 10 N -0.711 5.711 11 C 0.494 3.506 12 O -0.591 6.591 13 C -0.156 4.156 14 C 0.173 3.827 15 H 0.101 0.899 16 O -0.558 6.558 17 C -0.086 4.086 18 C -0.096 4.096 19 C -0.025 4.025 20 Cl -0.052 7.052 21 C -0.102 4.102 22 C -0.027 4.027 23 Cl -0.055 7.055 24 C -0.098 4.098 25 H 0.268 0.732 26 H -0.015 1.015 27 H -0.015 1.015 28 H 0.408 0.592 29 H 0.129 0.871 30 H 0.127 0.873 31 H 0.383 0.617 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.496 -23.115 0.083 27.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.807 3.193 4 H -0.175 1.175 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.592 4.592 8 H 0.102 0.898 9 C 0.143 3.857 10 N -0.361 5.361 11 C 0.281 3.719 12 O -0.472 6.472 13 C -0.195 4.195 14 C 0.113 3.887 15 H 0.118 0.882 16 O -0.364 6.364 17 C -0.087 4.087 18 C -0.114 4.114 19 C -0.052 4.052 20 Cl -0.023 7.023 21 C -0.121 4.121 22 C -0.054 4.054 23 Cl -0.026 7.026 24 C -0.117 4.117 25 H 0.077 0.923 26 H 0.003 0.997 27 H 0.003 0.997 28 H 0.244 0.756 29 H 0.147 0.853 30 H 0.145 0.855 31 H 0.232 0.768 32 H 0.174 0.826 33 H 0.175 0.825 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 14.106 -23.293 0.499 27.236 hybrid contribution 0.702 0.934 -0.248 1.194 sum 14.808 -22.360 0.252 26.820 Atomic orbital electron populations 1.70147 1.08297 1.28460 1.50157 1.26072 0.95757 1.03941 0.93955 0.85123 0.79156 0.77392 0.77617 1.17519 1.20552 1.20550 1.21664 0.94317 0.90618 1.52571 0.89762 1.18502 0.88756 0.84515 0.93926 1.46216 1.11063 1.05642 1.73204 1.21329 0.89875 0.84861 0.75808 1.90696 1.19396 1.85365 1.51727 1.22438 0.97895 0.91221 1.07996 1.20386 0.90814 0.88520 0.89000 0.88166 1.86788 1.37999 1.95908 1.15753 1.20299 0.97573 0.97730 0.93103 1.21080 0.94456 0.95752 1.00121 1.20716 0.97734 0.97884 0.88897 1.98405 1.74961 1.88891 1.40074 1.21088 1.00395 1.01063 0.89603 1.20743 0.99787 0.97101 0.87751 1.98401 1.95879 1.80638 1.27676 1.21176 0.97371 0.94461 0.98646 0.92301 0.99670 0.99658 0.75636 0.85310 0.85468 0.76768 0.82582 0.82509 0.83256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.15 13.29 21.45 0.28 -55.86 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.98 41.91 29.54 68.60 2.03 43.94 16 4 H -0.25 -9.83 7.11 99.48 0.71 -9.13 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 6 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 7 C -0.55 -29.73 9.28 25.60 0.24 -29.50 16 8 H 0.08 4.06 7.60 -2.91 -0.02 4.04 16 9 C 0.27 14.43 5.43 85.63 0.46 14.90 16 10 N -0.71 -28.62 5.55 -466.79 -2.59 -31.21 16 11 C 0.49 18.33 7.71 87.66 0.68 19.01 16 12 O -0.59 -28.39 15.42 10.74 0.17 -28.23 16 13 C -0.16 -3.38 5.36 29.85 0.16 -3.22 16 14 C 0.17 3.83 2.75 29.85 0.08 3.91 16 15 H 0.10 2.62 7.82 -2.39 -0.02 2.61 16 16 O -0.56 -14.42 12.42 -135.21 -1.68 -16.10 16 17 C -0.09 -1.43 4.97 -19.87 -0.10 -1.53 16 18 C -0.10 -1.36 9.11 22.30 0.20 -1.16 16 19 C -0.03 -0.36 6.32 22.32 0.14 -0.22 16 20 Cl -0.05 -0.71 28.96 -2.72 -0.08 -0.79 16 21 C -0.10 -1.42 9.62 22.31 0.21 -1.21 16 22 C -0.03 -0.41 6.32 22.32 0.14 -0.27 16 23 Cl -0.05 -0.82 28.96 -2.72 -0.08 -0.90 16 24 C -0.10 -1.57 9.45 22.29 0.21 -1.36 16 25 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 26 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 27 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 28 H 0.41 13.24 8.32 -92.71 -0.77 12.47 16 29 H 0.13 2.13 8.14 -2.39 -0.02 2.12 16 30 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.38 6.47 7.50 -74.05 -0.56 5.91 16 32 H 0.16 1.64 6.77 -2.91 -0.02 1.62 16 33 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 34 H 0.15 2.18 8.04 -2.91 -0.02 2.15 16 Total: -1.00 -74.21 332.19 0.78 -73.43 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -0.16 Total: 15.79 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: 2.89 Total: -0.07 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -2.30 Total: -87.07 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -1.51 Total: -44.33 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.16 Total: -1.69 kcal Total: -74.21 0.78 -73.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787621576.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.084 kcal (2) G-P(sol) polarization free energy of solvation -74.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds