Wall clock time and date at job start Tue Mar 31 2020 11:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99534 * 2 1 4 4 H 1.48496 * 109.47106 * 270.00038 * 3 2 1 5 5 H 1.48499 * 109.47377 * 30.00611 * 3 2 1 6 6 H 1.48508 * 109.46360 * 150.00275 * 3 2 1 7 7 C 1.37880 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99970 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99551 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46670 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46746 * 180.02562 * 10 9 7 12 12 O 1.45204 * 109.46886 * 179.97438 * 11 10 9 13 13 C 1.34765 * 116.99936 * 180.02562 * 12 11 10 14 14 O 1.21532 * 120.00108 * 359.97438 * 13 12 11 15 15 C 1.47293 * 120.00292 * 180.02562 * 13 12 11 16 16 C 1.39839 * 120.19943 * 5.88506 * 15 13 12 17 17 C 1.37811 * 119.92256 * 180.30545 * 16 15 13 18 18 Cl 1.73604 * 119.82462 * 179.72709 * 17 16 15 19 19 C 1.38723 * 120.34876 * 359.70646 * 17 16 15 20 20 C 1.38033 * 120.40578 * 359.97438 * 19 17 16 21 21 Cl 1.73601 * 119.96340 * 180.02562 * 20 19 17 22 22 C 1.39048 * 120.06800 * 0.02562 * 20 19 17 23 23 N 1.38954 * 120.17352 * 179.97438 * 22 20 19 24 24 H 0.96998 * 120.00292 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47311 * 59.99680 * 9 7 2 26 26 H 1.09002 * 109.46751 * 299.99550 * 9 7 2 27 27 H 1.08993 * 109.47439 * 60.00104 * 10 9 7 28 28 H 1.09002 * 109.47041 * 299.99220 * 10 9 7 29 29 H 1.08999 * 109.47323 * 59.99474 * 11 10 9 30 30 H 1.09002 * 109.47122 * 299.99119 * 11 10 9 31 31 H 1.07996 * 120.03936 * 0.03796 * 16 15 13 32 32 H 1.07991 * 119.79408 * 180.02562 * 19 17 16 33 33 H 0.97001 * 119.99951 * 24.90569 * 23 22 20 34 34 H 0.97002 * 119.99914 * 204.90608 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 6 5.5516 -2.6364 -0.0022 12 8 6.0357 -4.0054 -0.0027 13 6 7.3717 -4.1819 -0.0022 14 8 8.1120 -3.2181 -0.0018 15 6 7.9348 -5.5430 -0.0032 16 6 7.0928 -6.6524 -0.1287 17 6 7.6252 -7.9235 -0.1226 18 17 6.5769 -9.2993 -0.2713 19 6 8.9943 -8.1095 0.0013 20 6 9.8389 -7.0241 0.1194 21 17 11.5505 -7.2701 0.2731 22 6 9.3201 -5.7340 0.1153 23 7 10.1683 -4.6398 0.2345 24 1 -0.4850 0.8400 0.0004 25 1 3.8753 -0.6803 0.8888 26 1 3.8745 -0.6800 -0.8912 27 1 3.6580 -3.1497 -0.8924 28 1 3.6587 -3.1509 0.8876 29 1 5.9149 -2.1232 0.8881 30 1 5.9150 -2.1219 -0.8919 31 1 6.0263 -6.5135 -0.2258 32 1 9.4019 -9.1095 0.0046 33 1 11.0970 -4.7145 -0.0352 34 1 9.8316 -3.8014 0.5875 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791199471.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:35 Heat of formation + Delta-G solvation = -102.160620 kcal Electronic energy + Delta-G solvation = -20733.884935 eV Core-core repulsion = 17103.312229 eV Total energy + Delta-G solvation = -3630.572705 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 2.87 seconds Orbital eigenvalues (eV) -41.89610 -40.28601 -38.04089 -37.78218 -37.22490 -35.99333 -35.40252 -33.89956 -32.52980 -29.90196 -29.34422 -26.01321 -24.63054 -23.50435 -22.28905 -21.97611 -19.31286 -19.01934 -18.38137 -18.23291 -17.88368 -17.59634 -16.47224 -16.26920 -16.06258 -15.74700 -15.62394 -14.98776 -14.80760 -14.58810 -13.96053 -13.94670 -13.66797 -13.46659 -13.16016 -12.87075 -12.60225 -12.57342 -12.28739 -12.10716 -12.01874 -11.93275 -11.76211 -11.54049 -11.39096 -11.35515 -11.22511 -10.76867 -10.21422 -8.85317 -8.29470 -6.34507 -0.59863 -0.00884 0.74070 1.22938 1.25690 1.37558 1.39071 1.50595 1.58309 2.34664 2.36282 2.63343 3.05803 3.33985 3.72412 3.86566 3.90853 4.02245 4.03084 4.20182 4.39940 4.50245 4.65057 4.75444 4.77664 4.90973 4.96672 5.13343 5.28535 5.48203 5.50195 5.62954 6.14360 6.26596 6.56373 6.67494 6.73859 7.29997 8.87128 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.019375 B = 0.002634 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.824930 B =10626.884999 C =12039.222116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.004 3.996 3 Si 0.950 3.050 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.244 1.244 7 C -0.534 4.534 8 H 0.035 0.965 9 C -0.009 4.009 10 C -0.094 4.094 11 C 0.077 3.923 12 O -0.351 6.351 13 C 0.518 3.482 14 O -0.531 6.531 15 C -0.202 4.202 16 C 0.001 3.999 17 C -0.099 4.099 18 Cl -0.053 7.053 19 C -0.007 4.007 20 C -0.118 4.118 21 Cl -0.039 7.039 22 C 0.291 3.709 23 N -0.841 5.841 24 H 0.267 0.733 25 H 0.026 0.974 26 H 0.025 0.975 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.155 0.845 32 H 0.172 0.828 33 H 0.411 0.589 34 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.932 -17.902 0.237 31.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.773 3.227 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.167 1.167 7 C -0.572 4.572 8 H 0.053 0.947 9 C -0.046 4.046 10 C -0.131 4.131 11 C 0.004 3.996 12 O -0.267 6.267 13 C 0.366 3.634 14 O -0.423 6.423 15 C -0.209 4.209 16 C -0.018 4.018 17 C -0.128 4.128 18 Cl -0.024 7.024 19 C -0.027 4.027 20 C -0.150 4.150 21 Cl -0.010 7.010 22 C 0.177 3.823 23 N -0.385 5.385 24 H 0.076 0.924 25 H 0.045 0.955 26 H 0.043 0.957 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.173 0.827 32 H 0.190 0.810 33 H 0.243 0.757 34 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 26.020 -17.574 0.252 31.400 hybrid contribution -0.127 1.100 -0.022 1.107 sum 25.892 -16.475 0.230 30.690 Atomic orbital electron populations 1.70065 1.08333 1.28240 1.52463 1.26021 0.95631 1.03572 0.94070 0.85659 0.79582 0.78155 0.79275 1.19113 1.21060 1.16731 1.21416 0.91790 0.93318 1.50632 0.94666 1.19443 0.94210 0.93721 0.97250 1.21330 0.90770 0.98377 1.02649 1.23242 0.95048 0.78468 1.02862 1.86534 1.23087 1.33609 1.83510 1.20959 0.80924 0.89400 0.72164 1.90628 1.60132 1.43084 1.48485 1.18357 0.92034 0.90333 1.20144 1.21339 1.01210 0.89377 0.89904 1.20294 0.91242 0.88633 1.12602 1.98394 1.65763 1.41625 1.96659 1.21153 0.90223 0.99858 0.91496 1.20138 0.87029 0.91755 1.16078 1.98377 1.09414 1.96576 1.96615 1.17406 0.88371 0.87843 0.88643 1.43034 1.12983 1.13092 1.69439 0.92433 0.95525 0.95688 0.91811 0.91816 0.90698 0.90762 0.82699 0.81034 0.75731 0.74693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.40 13.96 21.45 0.30 -59.10 16 2 C 0.00 0.23 5.47 84.65 0.46 0.69 16 3 Si 0.95 43.56 27.47 68.60 1.88 45.45 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 6 H -0.24 -10.26 6.54 99.48 0.65 -9.61 16 7 C -0.53 -30.39 9.66 25.60 0.25 -30.15 16 8 H 0.03 2.20 7.99 -2.91 -0.02 2.18 16 9 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 10 C -0.09 -3.53 5.53 30.60 0.17 -3.36 16 11 C 0.08 2.42 5.48 71.98 0.39 2.81 16 12 O -0.35 -10.27 9.49 -56.76 -0.54 -10.81 16 13 C 0.52 13.90 7.87 70.20 0.55 14.45 16 14 O -0.53 -15.35 13.60 19.73 0.27 -15.09 16 15 C -0.20 -4.37 5.89 -20.00 -0.12 -4.49 16 16 C 0.00 0.02 9.38 22.56 0.21 0.23 16 17 C -0.10 -1.61 6.31 22.28 0.14 -1.47 16 18 Cl -0.05 -0.85 28.94 -2.72 -0.08 -0.93 16 19 C -0.01 -0.10 9.58 22.34 0.21 0.11 16 20 C -0.12 -1.79 6.33 22.42 0.14 -1.64 16 21 Cl -0.04 -0.48 27.77 -2.72 -0.08 -0.56 16 22 C 0.29 5.39 6.76 38.72 0.26 5.66 16 23 N -0.84 -14.12 8.31 -50.84 -0.42 -14.55 16 24 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 25 H 0.03 1.16 7.20 -2.39 -0.02 1.15 16 26 H 0.02 1.08 7.57 -2.39 -0.02 1.06 16 27 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.16 2.98 7.62 -2.91 -0.02 2.96 16 32 H 0.17 1.49 8.06 -2.91 -0.02 1.46 16 33 H 0.41 5.20 7.88 -92.71 -0.73 4.47 16 34 H 0.42 8.01 6.11 -92.71 -0.57 7.45 16 Total: -1.00 -64.95 325.90 3.95 -61.00 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -0.18 Total: 11.99 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 2.80 Total: -17.42 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -0.12 Total: -73.65 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.27 Total: -25.89 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.88 Total: 45.45 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.15 Total: -1.48 kcal Total: -64.95 3.95 -61.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791199471.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.161 kcal (2) G-P(sol) polarization free energy of solvation -64.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.87 seconds