Wall clock time and date at job start Tue Mar 31 2020 12:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99705 * 2 1 4 4 N 1.46900 * 109.46997 * 124.11646 * 3 2 1 5 5 C 1.46894 * 110.99994 * 301.81124 * 4 3 2 6 6 C 1.50697 * 109.47695 * 288.46363 * 5 4 3 7 7 H 1.08002 * 119.99744 * 358.92449 * 6 5 4 8 8 C 1.37875 * 120.00528 * 178.92666 * 6 5 4 9 9 N 1.31516 * 119.99547 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00365 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46516 * 60.00103 * 10 8 6 12 12 H 1.48495 * 109.47232 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46784 * 300.00651 * 10 8 6 14 14 C 1.46904 * 111.00285 * 65.76948 * 4 3 2 15 15 N 1.46495 * 109.46969 * 81.04293 * 14 4 3 16 16 N 1.28375 * 119.14468 * 75.00213 * 15 14 4 17 17 C 1.30368 * 122.49616 * 179.97438 * 16 15 14 18 18 C 1.40603 * 120.44099 * 0.02562 * 17 16 15 19 19 Cl 1.73602 * 120.86887 * 179.97438 * 18 17 16 20 20 C 1.36873 * 118.26716 * 0.02562 * 18 17 16 21 21 Cl 1.73604 * 121.11623 * 179.97438 * 20 18 17 22 22 C 1.34666 * 119.14564 * 255.29390 * 15 14 4 23 23 O 1.22083 * 120.34328 * 0.02562 * 22 15 14 24 24 H 1.07998 * 119.99926 * 0.02562 * 1 2 3 25 25 H 1.08003 * 119.99819 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.00415 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47482 * 4.11454 * 3 2 1 28 28 H 1.09004 * 109.47143 * 244.11098 * 3 2 1 29 29 H 1.09004 * 109.47084 * 48.46545 * 5 4 3 30 30 H 1.09004 * 109.47459 * 168.45590 * 5 4 3 31 31 H 0.97004 * 119.99692 * 180.02562 * 9 8 6 32 32 H 1.08997 * 109.46895 * 321.04662 * 14 4 3 33 33 H 1.08993 * 109.46972 * 201.04484 * 14 4 3 34 34 H 1.07999 * 119.78024 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9810 1.3408 1.1466 5 6 2.2505 1.1782 2.4107 6 6 1.4588 2.4278 2.6979 7 1 1.5083 3.2664 2.0190 8 6 0.6713 2.5008 3.8272 9 7 0.6114 1.4799 4.6541 10 14 -0.3096 4.0501 4.1836 11 1 -1.2570 4.3034 3.0685 12 1 -1.0680 3.8760 5.4483 13 1 0.6171 5.2028 4.3172 14 6 4.0324 0.3238 1.0115 15 7 5.0836 0.8234 0.1218 16 7 5.9045 1.7081 0.5591 17 6 6.8640 2.1972 -0.1756 18 6 7.0371 1.7641 -1.5020 19 17 8.3105 2.4084 -2.4904 20 6 6.1747 0.8219 -1.9939 21 17 6.3202 0.2351 -3.6213 22 6 5.1599 0.3470 -1.1355 23 8 4.3623 -0.4901 -1.5273 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9354 0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3575 2.1323 0.0737 28 1 2.6337 1.3955 -0.9246 29 1 1.5723 0.3285 2.3316 30 1 2.9593 1.0030 3.2200 31 1 0.0571 1.5310 5.4485 32 1 3.6049 -0.5873 0.5930 33 1 4.4578 0.1086 1.9916 34 1 7.5298 2.9407 0.2371 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793559950.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:18 Heat of formation + Delta-G solvation = 58.745906 kcal Electronic energy + Delta-G solvation = -22059.815606 eV Core-core repulsion = 18468.513082 eV Total energy + Delta-G solvation = -3591.302524 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.17020 -38.08692 -37.78043 -37.21238 -36.77943 -34.13345 -32.89033 -31.94993 -31.17533 -27.82479 -26.72828 -25.21297 -24.30662 -23.16690 -21.17645 -19.33590 -19.01781 -17.81682 -17.01042 -16.78914 -16.30469 -15.49459 -15.28106 -14.75530 -14.59987 -14.33352 -13.97320 -13.84607 -13.38942 -13.09239 -12.64091 -12.40070 -12.24569 -11.99160 -11.74652 -11.36625 -11.32485 -11.11711 -11.04171 -10.81737 -10.80248 -10.57064 -10.11884 -10.01340 -9.91809 -9.43375 -8.78470 -8.60746 -8.47902 -7.61537 -6.09104 -4.10425 -0.00212 1.27389 1.35298 1.55122 2.29304 2.85942 3.06102 3.30135 3.34627 3.37362 3.77749 4.29400 4.35367 4.53178 4.77328 5.09608 5.24637 5.27467 5.45213 5.53309 5.54700 5.75416 5.82028 5.97760 6.38094 6.51319 6.95267 7.11004 7.19184 7.33234 7.36091 7.64439 7.80189 7.98507 8.06207 8.34292 8.94652 9.53427 11.01446 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.019764 B = 0.003729 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.383776 B = 7506.642095 C = 8328.836726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.178 4.178 3 C 0.092 3.908 4 N -0.533 5.533 5 C 0.198 3.802 6 C -0.505 4.505 7 H 0.062 0.938 8 C 0.059 3.941 9 N -0.897 5.897 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.262 3.738 15 N -0.319 5.319 16 N -0.154 5.154 17 C 0.022 3.978 18 C 0.021 3.979 19 Cl -0.018 7.018 20 C -0.125 4.125 21 Cl 0.000 7.000 22 C 0.493 3.507 23 O -0.502 6.502 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.100 0.900 27 H 0.089 0.911 28 H 0.055 0.945 29 H 0.012 0.988 30 H 0.032 0.968 31 H 0.263 0.737 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.798 -0.803 -12.207 18.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.198 4.198 3 C -0.036 4.036 4 N -0.257 5.257 5 C 0.074 3.926 6 C -0.544 4.544 7 H 0.080 0.920 8 C -0.142 4.142 9 N -0.536 5.536 10 Si 0.726 3.274 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.202 1.202 14 C 0.053 3.947 15 N -0.142 5.142 16 N 0.022 4.978 17 C -0.168 4.168 18 C -0.014 4.014 19 Cl 0.011 6.989 20 C -0.165 4.165 21 Cl 0.029 6.971 22 C 0.288 3.712 23 O -0.378 6.378 24 H 0.115 0.885 25 H 0.106 0.894 26 H 0.118 0.882 27 H 0.107 0.893 28 H 0.074 0.926 29 H 0.029 0.971 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.112 0.888 33 H 0.128 0.872 34 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 13.141 -0.888 -11.589 17.544 hybrid contribution -0.477 0.015 -0.803 0.934 sum 12.664 -0.873 -12.393 17.740 Atomic orbital electron populations 1.23694 0.95902 1.01260 1.00272 1.23397 0.96717 0.99331 1.00363 1.21254 0.94694 0.95226 0.92443 1.62085 1.13065 1.44962 1.05616 1.19819 0.92361 0.97778 0.82658 1.20975 1.25725 1.00083 1.07579 0.92003 1.24925 0.96808 0.96491 0.96008 1.69933 1.40154 1.30317 1.13191 0.86564 0.80030 0.83361 0.77490 1.20298 1.21341 1.20156 1.22668 0.85373 0.93253 0.93388 1.47441 1.25024 1.30009 1.11739 1.71131 0.97974 0.99036 1.29691 1.23459 0.99420 1.04855 0.89061 1.22493 0.91222 0.94146 0.93521 1.98427 1.47646 1.84323 1.68515 1.22253 0.99965 1.02564 0.91748 1.98394 1.96776 1.87159 1.14762 1.17339 0.86454 0.85107 0.82305 1.91053 1.41665 1.31907 1.73222 0.88456 0.89414 0.88222 0.89278 0.92644 0.97057 0.95025 0.92784 0.88791 0.87221 0.78294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 14.32 29.01 0.42 -2.67 16 2 C -0.18 -3.31 7.36 -36.02 -0.27 -3.57 16 3 C 0.09 1.77 5.62 -4.97 -0.03 1.74 16 4 N -0.53 -10.78 4.76 -241.44 -1.15 -11.93 16 5 C 0.20 4.75 4.55 -4.98 -0.02 4.72 16 6 C -0.50 -13.41 8.60 -34.44 -0.30 -13.71 16 7 H 0.06 1.65 7.51 -52.49 -0.39 1.26 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -25.46 13.29 55.43 0.74 -24.72 16 10 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 14 C 0.26 4.52 5.45 -63.32 -0.34 4.17 16 15 N -0.32 -5.02 3.38 -66.36 -0.22 -5.25 16 16 N -0.15 -2.19 10.89 30.70 0.33 -1.86 16 17 C 0.02 0.23 11.15 -17.28 -0.19 0.04 16 18 C 0.02 0.23 6.37 -39.18 -0.25 -0.02 16 19 Cl -0.02 -0.16 28.16 -51.86 -1.46 -1.62 16 20 C -0.12 -1.67 6.40 -38.97 -0.25 -1.92 16 21 Cl 0.00 0.00 27.80 -51.86 -1.44 -1.44 16 22 C 0.49 7.82 6.84 -15.20 -0.10 7.71 16 23 O -0.50 -9.07 15.72 4.84 0.08 -9.00 16 24 H 0.10 1.75 7.84 -52.49 -0.41 1.33 16 25 H 0.09 1.40 8.06 -52.48 -0.42 0.97 16 26 H 0.10 1.80 6.75 -52.49 -0.35 1.45 16 27 H 0.09 1.84 6.97 -51.93 -0.36 1.48 16 28 H 0.06 1.05 7.11 -51.93 -0.37 0.68 16 29 H 0.01 0.30 6.66 -51.93 -0.35 -0.05 16 30 H 0.03 0.80 7.65 -51.93 -0.40 0.41 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 32 H 0.09 1.62 4.95 -51.93 -0.26 1.36 16 33 H 0.11 1.79 7.55 -51.93 -0.39 1.40 16 34 H 0.20 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 324.36 15.07 4.89 4.89 Total: -1.00 -29.21 324.36 -7.96 -37.17 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -3.26 Total: -0.26 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -1.43 Total: -1.97 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: -0.30 Total: -43.75 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.08 Total: -9.00 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -2.90 Total: -3.07 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.21 -7.96 -37.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793559950.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.911 kcal (2) G-P(sol) polarization free energy of solvation -29.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds