Wall clock time and date at job start Tue Mar 31 2020 12:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99705 * 2 1 4 4 N 1.46900 * 109.46997 * 124.11646 * 3 2 1 5 5 C 1.46894 * 110.99994 * 301.81124 * 4 3 2 6 6 C 1.50697 * 109.47695 * 288.46363 * 5 4 3 7 7 H 1.08002 * 119.99744 * 358.92449 * 6 5 4 8 8 C 1.37875 * 120.00528 * 178.92666 * 6 5 4 9 9 N 1.31516 * 119.99547 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00365 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46516 * 60.00103 * 10 8 6 12 12 H 1.48495 * 109.47232 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46784 * 300.00651 * 10 8 6 14 14 C 1.46904 * 111.00285 * 65.76948 * 4 3 2 15 15 N 1.46495 * 109.46969 * 81.04293 * 14 4 3 16 16 N 1.28375 * 119.14468 * 75.00213 * 15 14 4 17 17 C 1.30368 * 122.49616 * 179.97438 * 16 15 14 18 18 C 1.40603 * 120.44099 * 0.02562 * 17 16 15 19 19 Cl 1.73602 * 120.86887 * 179.97438 * 18 17 16 20 20 C 1.36873 * 118.26716 * 0.02562 * 18 17 16 21 21 Cl 1.73604 * 121.11623 * 179.97438 * 20 18 17 22 22 C 1.34666 * 119.14564 * 255.29390 * 15 14 4 23 23 O 1.22083 * 120.34328 * 0.02562 * 22 15 14 24 24 H 1.07998 * 119.99926 * 0.02562 * 1 2 3 25 25 H 1.08003 * 119.99819 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.00415 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47482 * 4.11454 * 3 2 1 28 28 H 1.09004 * 109.47143 * 244.11098 * 3 2 1 29 29 H 1.09004 * 109.47084 * 48.46545 * 5 4 3 30 30 H 1.09004 * 109.47459 * 168.45590 * 5 4 3 31 31 H 0.97004 * 119.99692 * 180.02562 * 9 8 6 32 32 H 1.08997 * 109.46895 * 321.04662 * 14 4 3 33 33 H 1.08993 * 109.46972 * 201.04484 * 14 4 3 34 34 H 1.07999 * 119.78024 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9810 1.3408 1.1466 5 6 2.2505 1.1782 2.4107 6 6 1.4588 2.4278 2.6979 7 1 1.5083 3.2664 2.0190 8 6 0.6713 2.5008 3.8272 9 7 0.6114 1.4799 4.6541 10 14 -0.3096 4.0501 4.1836 11 1 -1.2570 4.3034 3.0685 12 1 -1.0680 3.8760 5.4483 13 1 0.6171 5.2028 4.3172 14 6 4.0324 0.3238 1.0115 15 7 5.0836 0.8234 0.1218 16 7 5.9045 1.7081 0.5591 17 6 6.8640 2.1972 -0.1756 18 6 7.0371 1.7641 -1.5020 19 17 8.3105 2.4084 -2.4904 20 6 6.1747 0.8219 -1.9939 21 17 6.3202 0.2351 -3.6213 22 6 5.1599 0.3470 -1.1355 23 8 4.3623 -0.4901 -1.5273 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9354 0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3575 2.1323 0.0737 28 1 2.6337 1.3955 -0.9246 29 1 1.5723 0.3285 2.3316 30 1 2.9593 1.0030 3.2200 31 1 0.0571 1.5310 5.4485 32 1 3.6049 -0.5873 0.5930 33 1 4.4578 0.1086 1.9916 34 1 7.5298 2.9407 0.2371 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793559950.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:17 Heat of formation + Delta-G solvation = 40.445144 kcal Electronic energy + Delta-G solvation = -22060.609186 eV Core-core repulsion = 18468.513082 eV Total energy + Delta-G solvation = -3592.096104 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.29665 -39.31912 -39.07649 -38.32071 -37.76595 -35.31559 -34.80593 -33.45000 -32.35532 -29.53555 -28.21853 -26.57399 -25.58205 -24.62189 -22.83805 -20.81302 -20.11111 -18.99579 -18.32753 -18.08652 -17.96708 -16.93301 -16.68037 -16.33969 -15.99493 -15.69873 -15.49023 -14.87785 -14.48557 -14.31713 -14.21962 -14.06622 -13.51272 -13.19704 -13.05572 -12.93211 -12.76830 -12.61064 -12.40616 -12.27639 -12.25415 -12.07892 -12.00272 -11.46844 -11.12614 -10.94834 -10.57105 -10.25640 -9.75902 -9.26331 -8.15890 -6.23828 -1.03633 0.31670 0.33367 0.52266 1.16066 1.39327 1.44863 1.45973 1.53708 1.96687 2.43320 2.73905 3.14440 3.19278 3.34948 3.57078 3.83558 3.97574 4.11497 4.21392 4.25168 4.36211 4.49798 4.78603 4.86086 4.98692 5.14389 5.25570 5.63139 5.68160 5.82567 5.98337 6.15889 6.20238 6.43764 6.87217 6.95896 7.44213 8.94207 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.019764 B = 0.003729 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.383776 B = 7506.642095 C = 8328.836726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.190 4.190 3 C 0.101 3.899 4 N -0.538 5.538 5 C 0.215 3.785 6 C -0.515 4.515 7 H 0.056 0.944 8 C 0.012 3.988 9 N -0.929 5.929 10 Si 0.959 3.041 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.270 1.270 14 C 0.271 3.729 15 N -0.327 5.327 16 N -0.190 5.190 17 C 0.052 3.948 18 C 0.036 3.964 19 Cl 0.013 6.987 20 C -0.139 4.139 21 Cl 0.006 6.994 22 C 0.487 3.513 23 O -0.537 6.537 24 H 0.093 0.907 25 H 0.108 0.892 26 H 0.103 0.897 27 H 0.072 0.928 28 H 0.058 0.942 29 H -0.008 1.008 30 H 0.014 0.986 31 H 0.264 0.736 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.108 0.573 -12.946 19.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.209 4.209 3 C -0.027 4.027 4 N -0.262 5.262 5 C 0.090 3.910 6 C -0.554 4.554 7 H 0.075 0.925 8 C -0.186 4.186 9 N -0.569 5.569 10 Si 0.784 3.216 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.195 1.195 14 C 0.061 3.939 15 N -0.149 5.149 16 N -0.013 5.013 17 C -0.138 4.138 18 C 0.001 3.999 19 Cl 0.042 6.958 20 C -0.179 4.179 21 Cl 0.035 6.965 22 C 0.284 3.716 23 O -0.415 6.415 24 H 0.112 0.888 25 H 0.126 0.874 26 H 0.121 0.879 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.010 0.990 30 H 0.032 0.968 31 H 0.072 0.928 32 H 0.109 0.891 33 H 0.131 0.869 34 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 14.481 0.501 -12.346 19.037 hybrid contribution -0.686 -0.354 -0.687 1.034 sum 13.796 0.147 -13.034 18.979 Atomic orbital electron populations 1.23870 0.95752 1.02090 0.99078 1.23381 0.97067 0.99041 1.01437 1.21102 0.94346 0.95112 0.92142 1.61938 1.13317 1.46584 1.04347 1.19411 0.91546 0.96106 0.83921 1.21247 1.25968 1.00686 1.07477 0.92530 1.25686 0.97792 0.99295 0.95861 1.70044 1.41033 1.32150 1.13662 0.85593 0.78710 0.79881 0.77372 1.19674 1.21040 1.19550 1.22462 0.84982 0.92456 0.94018 1.47078 1.25262 1.31046 1.11505 1.71150 0.99241 1.00031 1.30830 1.24248 0.97823 1.03330 0.88407 1.22566 0.90881 0.92688 0.93770 1.98450 1.45967 1.83584 1.67796 1.22172 1.00203 1.03590 0.91941 1.98393 1.96717 1.87267 1.14157 1.17640 0.86730 0.84823 0.82412 1.91024 1.43146 1.33544 1.73810 0.88825 0.87386 0.87900 0.90938 0.92329 0.98985 0.96826 0.92757 0.89083 0.86882 0.74114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.04 14.32 67.78 0.97 -5.07 16 2 C -0.19 -7.14 7.36 25.65 0.19 -6.95 16 3 C 0.10 3.97 5.62 85.56 0.48 4.45 16 4 N -0.54 -22.15 4.76 -917.77 -4.37 -26.52 16 5 C 0.22 10.60 4.55 85.56 0.39 10.99 16 6 C -0.52 -27.67 8.60 25.60 0.22 -27.45 16 7 H 0.06 3.04 7.51 -2.91 -0.02 3.02 16 8 C 0.01 0.67 5.46 84.65 0.46 1.13 16 9 N -0.93 -53.27 13.29 21.45 0.28 -52.98 16 10 Si 0.96 42.95 29.54 68.60 2.03 44.97 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 13 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 14 C 0.27 9.51 5.45 170.81 0.93 10.44 16 15 N -0.33 -10.23 3.38 -481.98 -1.63 -11.86 16 16 N -0.19 -5.16 10.89 -56.78 -0.62 -5.78 16 17 C 0.05 0.98 11.15 85.49 0.95 1.93 16 18 C 0.04 0.70 6.37 22.53 0.14 0.85 16 19 Cl 0.01 0.18 28.16 -2.72 -0.08 0.11 16 20 C -0.14 -3.52 6.40 22.66 0.15 -3.38 16 21 Cl 0.01 0.13 27.80 -2.72 -0.08 0.06 16 22 C 0.49 15.33 6.84 84.97 0.58 15.91 16 23 O -0.54 -19.64 15.72 -5.59 -0.09 -19.72 16 24 H 0.09 3.37 7.84 -2.91 -0.02 3.35 16 25 H 0.11 3.35 8.06 -2.91 -0.02 3.33 16 26 H 0.10 3.80 6.75 -2.91 -0.02 3.78 16 27 H 0.07 3.06 6.97 -2.39 -0.02 3.04 16 28 H 0.06 2.26 7.11 -2.39 -0.02 2.24 16 29 H -0.01 -0.40 6.66 -2.38 -0.02 -0.42 16 30 H 0.01 0.72 7.65 -2.39 -0.02 0.70 16 31 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 32 H 0.09 3.24 4.95 -2.39 -0.01 3.23 16 33 H 0.11 3.81 7.55 -2.39 -0.02 3.79 16 34 H 0.24 2.29 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -63.02 324.36 2.06 -60.96 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 1.14 Total: 7.91 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 5.47 Total: 2.86 kcal Atomic # 7 Polarization: -90.81 SS G_CDS: -6.33 Total: -97.14 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.09 Total: -19.72 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 17 Polarization: 0.32 SS G_CDS: -0.15 Total: 0.16 kcal Total: -63.02 2.06 -60.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793559950.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.404 kcal (2) G-P(sol) polarization free energy of solvation -63.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds