Wall clock time and date at job start Tue Mar 31 2020 12:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86801 * 119.99795 * 2 1 4 4 H 1.48498 * 109.47075 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47070 * 299.99635 * 3 2 1 6 6 H 1.48496 * 109.47162 * 59.99950 * 3 2 1 7 7 C 1.39938 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00012 * 162.31403 * 7 2 1 9 9 C 1.41439 * 120.00053 * 342.31140 * 7 2 1 10 10 C 1.40785 * 120.17503 * 155.18826 * 9 7 2 11 11 C 1.37726 * 120.04896 * 180.02562 * 10 9 7 12 12 C 1.38350 * 120.42055 * 359.94689 * 11 10 9 13 13 C 1.39936 * 120.35377 * 0.04828 * 12 11 10 14 14 C 1.47761 * 120.02987 * 179.97438 * 13 12 11 15 15 O 1.21473 * 119.99870 * 179.97438 * 14 13 12 16 16 O 1.34706 * 120.00359 * 359.97438 * 14 13 12 17 17 C 1.45202 * 117.00088 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.47260 * 180.02562 * 17 16 14 19 19 O 1.21356 * 119.99891 * 0.02562 * 18 17 16 20 20 C 1.46436 * 120.00278 * 180.02562 * 18 17 16 21 21 C 1.36508 * 122.72057 * 179.73513 * 20 18 17 22 22 S 1.71005 * 108.91762 * 179.90134 * 21 20 18 23 23 C 1.75923 * 90.72348 * 0.30146 * 22 21 20 24 24 N 1.28730 * 109.80470 * 359.81913 * 23 22 21 25 25 C 1.39092 * 119.93539 * 359.97438 * 13 12 11 26 26 H 0.96997 * 120.00049 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.97753 * 0.02562 * 10 9 7 28 28 H 1.07999 * 119.78494 * 179.97438 * 11 10 9 29 29 H 1.08003 * 119.82857 * 180.02562 * 12 11 10 30 30 H 1.08995 * 109.47380 * 300.00579 * 17 16 14 31 31 H 1.09001 * 109.46784 * 60.00428 * 17 16 14 32 32 H 1.08003 * 125.53889 * 359.97438 * 21 20 18 33 33 H 1.07996 * 125.10190 * 179.82075 * 23 22 21 34 34 H 1.08000 * 120.20293 * 180.27125 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3465 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8835 2.3965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0498 -1.2341 -0.2836 9 6 1.3510 -2.4077 0.3733 10 6 1.8221 -3.6492 -0.0944 11 6 1.1800 -4.8120 0.2697 12 6 0.0712 -4.7707 1.0961 13 6 -0.4116 -3.5461 1.5710 14 6 -1.5967 -3.5103 2.4528 15 8 -2.0150 -2.4470 2.8651 16 8 -2.2133 -4.6567 2.7995 17 6 -3.3709 -4.5457 3.6689 18 6 -3.9237 -5.9198 3.9471 19 8 -3.3936 -6.8970 3.4607 20 6 -5.1006 -6.0758 4.8044 21 6 -5.6503 -7.2925 5.0888 22 16 -6.9987 -7.0653 6.1157 23 6 -6.7483 -5.3241 6.0963 24 7 -5.7267 -5.0385 5.3670 25 6 0.2252 -2.3627 1.2122 26 1 -0.4850 0.8400 -0.0004 27 1 2.6875 -3.6899 -0.7392 28 1 1.5447 -5.7621 -0.0918 29 1 -0.4247 -5.6884 1.3760 30 1 -3.0769 -4.0759 4.6074 31 1 -4.1340 -3.9385 3.1820 32 1 -5.2912 -8.2440 4.7253 33 1 -7.3599 -4.6029 6.6180 34 1 -0.1411 -1.4156 1.5797 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805407285.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:48 Heat of formation + Delta-G solvation = -54.418436 kcal Electronic energy + Delta-G solvation = -22184.650068 eV Core-core repulsion = 18560.624174 eV Total energy + Delta-G solvation = -3624.025893 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.055 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.65189 -39.71684 -38.50657 -37.31328 -35.66726 -33.73726 -31.16992 -30.54273 -29.53868 -29.25632 -25.87629 -25.29108 -23.41423 -22.32874 -20.97278 -19.85700 -19.65724 -18.56344 -17.81343 -16.87966 -16.35261 -16.15518 -16.09459 -15.35550 -15.16245 -14.96652 -14.68180 -14.17131 -13.93418 -13.80649 -13.34822 -13.08898 -12.63053 -12.58096 -12.48867 -12.09761 -11.67091 -11.19912 -11.10189 -10.75067 -10.50905 -10.37865 -10.37450 -10.25846 -10.24570 -10.07297 -9.70280 -9.48069 -9.37590 -9.23800 -7.73674 -7.54111 -6.81916 -4.42534 -0.03201 0.78524 1.10891 1.28708 1.97134 2.72020 2.78265 2.86684 3.07651 3.12218 3.14249 3.58648 3.63496 3.91254 4.15199 4.56351 4.58745 4.78274 4.99547 5.24890 5.27713 5.46680 5.55230 5.67192 6.14756 6.45291 6.60287 6.84205 6.90216 6.95060 6.98584 7.17767 7.29737 7.32049 7.70034 7.76741 7.91881 8.11040 8.45162 8.51400 8.77874 8.80033 10.13709 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.025523 B = 0.002540 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.792270 B =11021.631112 C =12032.035493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.460 4.460 8 H 0.083 0.917 9 C 0.094 3.906 10 C -0.199 4.199 11 C -0.104 4.104 12 C -0.191 4.191 13 C -0.114 4.114 14 C 0.513 3.487 15 O -0.515 6.515 16 O -0.341 6.341 17 C 0.034 3.966 18 C 0.432 3.568 19 O -0.419 6.419 20 C -0.024 4.024 21 C -0.202 4.202 22 S 0.159 5.841 23 C 0.038 3.962 24 N -0.426 5.426 25 C -0.088 4.088 26 H 0.284 0.716 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.192 0.808 33 H 0.212 0.788 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.216 -10.209 11.762 21.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.489 4.489 8 H 0.101 0.899 9 C 0.092 3.908 10 C -0.219 4.219 11 C -0.123 4.123 12 C -0.210 4.210 13 C -0.116 4.116 14 C 0.360 3.640 15 O -0.404 6.404 16 O -0.259 6.259 17 C -0.041 4.041 18 C 0.304 3.696 19 O -0.290 6.290 20 C -0.157 4.157 21 C -0.344 4.344 22 S 0.414 5.586 23 C -0.263 4.263 24 N -0.138 5.138 25 C -0.108 4.108 26 H 0.095 0.905 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.209 0.791 33 H 0.229 0.771 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.832 -10.361 12.020 21.721 hybrid contribution 0.742 0.980 -0.435 1.304 sum -14.089 -9.381 11.585 20.512 Atomic orbital electron populations 1.69790 1.07599 1.29687 1.34118 1.25967 0.94776 1.01590 0.92265 0.86222 0.80888 0.80763 0.78664 1.18320 1.19919 1.19580 1.19586 0.98213 0.90888 1.40207 0.89907 1.17544 0.91146 0.92646 0.89473 1.21200 1.03130 0.92728 1.04845 1.20523 0.96155 0.96968 0.98625 1.20631 1.00083 0.95469 1.04856 1.18797 0.94834 0.95982 1.01957 1.21966 0.83009 0.80629 0.78384 1.90775 1.65122 1.31094 1.53415 1.86662 1.41007 1.36306 1.61913 1.22911 0.88832 0.95858 0.96488 1.21259 0.80881 0.90426 0.76997 1.90626 1.55060 1.41641 1.41700 1.21054 1.01554 0.87782 1.05261 1.27033 1.00610 1.03843 1.02888 1.84083 1.25026 1.07923 1.41617 1.29459 0.98505 0.96567 1.01781 1.66946 1.06827 1.31926 1.08144 1.21640 0.96520 0.95899 0.96707 0.90487 0.88302 0.88464 0.87623 0.87592 0.87544 0.79087 0.77125 0.84675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.74 10.97 55.55 0.61 -20.13 16 2 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 3 Si 0.91 18.69 29.59 -169.99 -5.03 13.66 16 4 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.46 -12.04 9.05 -37.73 -0.34 -12.38 16 8 H 0.08 2.06 7.91 -52.49 -0.41 1.64 16 9 C 0.09 2.50 5.57 -106.87 -0.60 1.91 16 10 C -0.20 -4.78 9.78 -38.81 -0.38 -5.16 16 11 C -0.10 -2.32 10.01 -39.73 -0.40 -2.72 16 12 C -0.19 -4.38 9.62 -38.90 -0.37 -4.76 16 13 C -0.11 -2.84 5.87 -105.05 -0.62 -3.45 16 14 C 0.51 11.89 7.90 34.62 0.27 12.17 16 15 O -0.51 -12.67 16.12 -19.25 -0.31 -12.98 16 16 O -0.34 -6.93 8.99 -47.18 -0.42 -7.36 16 17 C 0.03 0.55 5.57 36.00 0.20 0.75 16 18 C 0.43 6.30 7.19 -31.01 -0.22 6.08 16 19 O -0.42 -7.10 16.83 -14.16 -0.24 -7.34 16 20 C -0.02 -0.27 6.65 -84.43 -0.56 -0.84 16 21 C -0.20 -1.78 10.64 30.11 0.32 -1.46 16 22 S 0.16 0.89 23.18 -107.50 -2.49 -1.61 16 23 C 0.04 0.25 12.45 51.46 0.64 0.89 16 24 N -0.43 -4.51 10.28 -11.01 -0.11 -4.62 16 25 C -0.09 -2.37 8.23 -38.42 -0.32 -2.69 16 26 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 27 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 28 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 29 H 0.11 2.26 7.59 -52.48 -0.40 1.86 16 30 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 31 H 0.11 1.64 8.14 -51.93 -0.42 1.21 16 32 H 0.19 1.47 8.02 -52.48 -0.42 1.05 16 33 H 0.21 0.58 8.06 -52.49 -0.42 0.15 16 34 H 0.14 3.85 5.77 -52.49 -0.30 3.55 16 LS Contribution 328.98 15.07 4.96 4.96 Total: -1.00 -31.77 328.98 -8.29 -40.06 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -2.78 Total: 5.27 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -2.46 Total: -9.90 kcal Atomic # 7 Polarization: -25.25 SS G_CDS: 0.50 Total: -24.75 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.97 Total: -27.68 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Atomic # 16 Polarization: 0.89 SS G_CDS: -2.49 Total: -1.61 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.77 -8.29 -40.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805407285.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.361 kcal (2) G-P(sol) polarization free energy of solvation -31.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds