Wall clock time and date at job start Tue Mar 31 2020 12:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86801 * 119.99795 * 2 1 4 4 H 1.48498 * 109.47075 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47070 * 299.99635 * 3 2 1 6 6 H 1.48496 * 109.47162 * 59.99950 * 3 2 1 7 7 C 1.39938 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00012 * 162.31403 * 7 2 1 9 9 C 1.41439 * 120.00053 * 342.31140 * 7 2 1 10 10 C 1.40785 * 120.17503 * 155.18826 * 9 7 2 11 11 C 1.37726 * 120.04896 * 180.02562 * 10 9 7 12 12 C 1.38350 * 120.42055 * 359.94689 * 11 10 9 13 13 C 1.39936 * 120.35377 * 0.04828 * 12 11 10 14 14 C 1.47761 * 120.02987 * 179.97438 * 13 12 11 15 15 O 1.21473 * 119.99870 * 179.97438 * 14 13 12 16 16 O 1.34706 * 120.00359 * 359.97438 * 14 13 12 17 17 C 1.45202 * 117.00088 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.47260 * 180.02562 * 17 16 14 19 19 O 1.21356 * 119.99891 * 0.02562 * 18 17 16 20 20 C 1.46436 * 120.00278 * 180.02562 * 18 17 16 21 21 C 1.36508 * 122.72057 * 179.73513 * 20 18 17 22 22 S 1.71005 * 108.91762 * 179.90134 * 21 20 18 23 23 C 1.75923 * 90.72348 * 0.30146 * 22 21 20 24 24 N 1.28730 * 109.80470 * 359.81913 * 23 22 21 25 25 C 1.39092 * 119.93539 * 359.97438 * 13 12 11 26 26 H 0.96997 * 120.00049 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.97753 * 0.02562 * 10 9 7 28 28 H 1.07999 * 119.78494 * 179.97438 * 11 10 9 29 29 H 1.08003 * 119.82857 * 180.02562 * 12 11 10 30 30 H 1.08995 * 109.47380 * 300.00579 * 17 16 14 31 31 H 1.09001 * 109.46784 * 60.00428 * 17 16 14 32 32 H 1.08003 * 125.53889 * 359.97438 * 21 20 18 33 33 H 1.07996 * 125.10190 * 179.82075 * 23 22 21 34 34 H 1.08000 * 120.20293 * 180.27125 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3465 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8835 2.3965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0498 -1.2341 -0.2836 9 6 1.3510 -2.4077 0.3733 10 6 1.8221 -3.6492 -0.0944 11 6 1.1800 -4.8120 0.2697 12 6 0.0712 -4.7707 1.0961 13 6 -0.4116 -3.5461 1.5710 14 6 -1.5967 -3.5103 2.4528 15 8 -2.0150 -2.4470 2.8651 16 8 -2.2133 -4.6567 2.7995 17 6 -3.3709 -4.5457 3.6689 18 6 -3.9237 -5.9198 3.9471 19 8 -3.3936 -6.8970 3.4607 20 6 -5.1006 -6.0758 4.8044 21 6 -5.6503 -7.2925 5.0888 22 16 -6.9987 -7.0653 6.1157 23 6 -6.7483 -5.3241 6.0963 24 7 -5.7267 -5.0385 5.3670 25 6 0.2252 -2.3627 1.2122 26 1 -0.4850 0.8400 -0.0004 27 1 2.6875 -3.6899 -0.7392 28 1 1.5447 -5.7621 -0.0918 29 1 -0.4247 -5.6884 1.3760 30 1 -3.0769 -4.0759 4.6074 31 1 -4.1340 -3.9385 3.1820 32 1 -5.2912 -8.2440 4.7253 33 1 -7.3599 -4.6029 6.6180 34 1 -0.1411 -1.4156 1.5797 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805407285.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:47 Heat of formation + Delta-G solvation = -72.366830 kcal Electronic energy + Delta-G solvation = -22185.428368 eV Core-core repulsion = 18560.624174 eV Total energy + Delta-G solvation = -3624.804194 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.055 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.84103 -41.13233 -39.59954 -39.12209 -37.40522 -35.63240 -32.43513 -31.88173 -31.40535 -30.54746 -27.34470 -26.63906 -24.90428 -23.46588 -22.87121 -21.61495 -20.45790 -19.78756 -19.28367 -18.38626 -17.81690 -17.79574 -17.21642 -16.81212 -16.53045 -16.30495 -16.10944 -15.55471 -15.19301 -15.02395 -14.81763 -14.38552 -14.36621 -14.07594 -13.79341 -13.50719 -13.09022 -13.01574 -12.82114 -12.60176 -12.22593 -12.09073 -11.97335 -11.57254 -11.48462 -11.16036 -11.10673 -10.89272 -10.87137 -9.97288 -9.65207 -9.47245 -8.69595 -6.40826 -0.73646 0.07020 0.24211 0.42963 0.50508 0.93982 1.38226 1.39951 1.44472 1.54927 1.73632 1.86551 2.19373 2.69024 2.71272 3.22533 3.60297 3.77006 3.89663 3.95402 4.08309 4.11449 4.28461 4.39788 4.60126 4.77594 4.84425 5.02674 5.09254 5.11972 5.26400 5.41639 5.78334 5.86539 5.95990 5.98842 6.19855 6.47719 6.50986 6.70392 6.84456 6.86500 8.28499 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.025523 B = 0.002540 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.792270 B =11021.631112 C =12032.035493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.029 3.971 3 Si 0.986 3.014 4 H -0.251 1.251 5 H -0.264 1.264 6 H -0.270 1.270 7 C -0.491 4.491 8 H 0.089 0.911 9 C 0.066 3.934 10 C -0.201 4.201 11 C -0.099 4.099 12 C -0.184 4.184 13 C -0.128 4.128 14 C 0.517 3.483 15 O -0.537 6.537 16 O -0.343 6.343 17 C 0.027 3.973 18 C 0.441 3.559 19 O -0.454 6.454 20 C -0.054 4.054 21 C -0.208 4.208 22 S 0.249 5.751 23 C 0.039 3.961 24 N -0.465 5.465 25 C -0.120 4.120 26 H 0.289 0.711 27 H 0.118 0.882 28 H 0.140 0.860 29 H 0.124 0.876 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.198 0.802 33 H 0.248 0.752 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.261 -11.501 12.762 22.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.186 4.186 3 Si 0.806 3.194 4 H -0.174 1.174 5 H -0.189 1.189 6 H -0.195 1.195 7 C -0.520 4.520 8 H 0.107 0.893 9 C 0.063 3.937 10 C -0.220 4.220 11 C -0.116 4.116 12 C -0.204 4.204 13 C -0.129 4.129 14 C 0.364 3.636 15 O -0.429 6.429 16 O -0.259 6.259 17 C -0.048 4.048 18 C 0.316 3.684 19 O -0.328 6.328 20 C -0.186 4.186 21 C -0.351 4.351 22 S 0.505 5.495 23 C -0.262 4.262 24 N -0.178 5.178 25 C -0.140 4.140 26 H 0.099 0.901 27 H 0.136 0.864 28 H 0.158 0.842 29 H 0.142 0.858 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.215 0.785 33 H 0.264 0.736 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -15.900 -11.686 13.033 23.648 hybrid contribution 0.862 1.172 -0.623 1.583 sum -15.038 -10.513 12.410 22.151 Atomic orbital electron populations 1.69876 1.09303 1.30809 1.35138 1.26894 0.95436 1.05071 0.91189 0.85103 0.79657 0.75869 0.78785 1.17379 1.18900 1.19462 1.19884 0.98677 0.91812 1.41613 0.89287 1.17921 0.91588 0.94163 0.89994 1.21511 1.03562 0.92419 1.04550 1.20948 0.95135 0.98206 0.97347 1.20931 1.00082 0.95303 1.04047 1.19035 0.95389 0.96211 1.02280 1.21755 0.82812 0.80976 0.78013 1.90747 1.65775 1.32073 1.54274 1.86614 1.42234 1.34664 1.62425 1.23284 0.87425 0.98021 0.96025 1.21259 0.81527 0.88827 0.76817 1.90600 1.56570 1.41999 1.43613 1.20596 1.01692 0.89303 1.07032 1.27321 1.01678 1.03281 1.02838 1.83842 1.21451 1.05821 1.38348 1.30124 0.97319 0.98524 1.00199 1.66924 1.08614 1.32373 1.09895 1.21457 0.98162 0.95631 0.98703 0.90074 0.86385 0.84221 0.85758 0.86847 0.87080 0.78486 0.73565 0.87360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.33 10.97 21.83 0.24 -45.09 16 2 C 0.03 1.50 5.14 85.25 0.44 1.94 16 3 Si 0.99 38.91 29.59 68.60 2.03 40.94 16 4 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 5 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 6 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.49 -26.34 9.05 23.47 0.21 -26.13 16 8 H 0.09 4.48 7.91 -2.91 -0.02 4.46 16 9 C 0.07 3.58 5.57 -21.32 -0.12 3.46 16 10 C -0.20 -9.52 9.78 22.77 0.22 -9.30 16 11 C -0.10 -4.21 10.01 22.18 0.22 -3.98 16 12 C -0.18 -8.36 9.62 22.71 0.22 -8.14 16 13 C -0.13 -6.52 5.87 -20.14 -0.12 -6.64 16 14 C 0.52 24.83 7.90 70.34 0.56 25.39 16 15 O -0.54 -27.70 16.12 19.92 0.32 -27.38 16 16 O -0.34 -14.26 8.99 -49.77 -0.45 -14.71 16 17 C 0.03 0.90 5.57 71.24 0.40 1.29 16 18 C 0.44 13.10 7.19 27.82 0.20 13.30 16 19 O -0.45 -15.68 16.83 15.53 0.26 -15.42 16 20 C -0.05 -1.21 6.65 40.61 0.27 -0.94 16 21 C -0.21 -3.31 10.64 67.42 0.72 -2.60 16 22 S 0.25 1.92 23.18 -56.49 -1.31 0.61 16 23 C 0.04 0.40 12.45 130.70 1.63 2.03 16 24 N -0.46 -9.31 10.28 -188.75 -1.94 -11.25 16 25 C -0.12 -6.73 8.23 23.02 0.19 -6.54 16 26 H 0.29 14.48 8.30 -92.71 -0.77 13.71 16 27 H 0.12 5.04 8.06 -2.91 -0.02 5.02 16 28 H 0.14 4.76 8.06 -2.91 -0.02 4.74 16 29 H 0.12 5.15 7.59 -2.91 -0.02 5.12 16 30 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 31 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 32 H 0.20 2.76 8.02 -2.91 -0.02 2.74 16 33 H 0.25 0.40 8.06 -2.91 -0.02 0.37 16 34 H 0.11 6.59 5.77 -2.91 -0.02 6.58 16 Total: -1.00 -72.42 328.98 5.34 -67.07 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 1.16 Total: 22.09 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: 5.03 Total: -16.87 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -1.70 Total: -56.34 kcal Atomic # 8 Polarization: -57.63 SS G_CDS: 0.14 Total: -57.50 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -1.31 Total: 0.61 kcal Total: -72.42 5.34 -67.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805407285.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.296 kcal (2) G-P(sol) polarization free energy of solvation -72.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds