Wall clock time and date at job start Tue Mar 31 2020 12:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86802 * 119.99881 * 2 1 4 4 H 1.48497 * 109.47132 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47266 * 299.99902 * 3 2 1 6 6 H 1.48500 * 109.47426 * 60.00172 * 3 2 1 7 7 C 1.40239 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00363 * 197.87828 * 7 2 1 9 9 C 1.41094 * 119.99916 * 17.88074 * 7 2 1 10 10 C 1.40893 * 120.10211 * 204.63950 * 9 7 2 11 11 C 1.36293 * 119.90210 * 180.02562 * 10 9 7 12 12 C 1.40075 * 120.10016 * 359.97438 * 11 10 9 13 13 C 1.47507 * 119.89955 * 179.97438 * 12 11 10 14 14 O 1.21509 * 119.99939 * 0.02562 * 13 12 11 15 15 O 1.34773 * 119.99823 * 179.97438 * 13 12 11 16 16 C 1.45199 * 117.00232 * 180.02562 * 15 13 12 17 17 C 1.50696 * 109.47258 * 179.97438 * 16 15 13 18 18 O 1.21351 * 120.00352 * 359.97438 * 17 16 15 19 19 C 1.46441 * 119.99744 * 179.97438 * 17 16 15 20 20 C 1.36506 * 122.71931 * 179.73380 * 19 17 16 21 21 S 1.71001 * 108.92184 * 179.90064 * 20 19 17 22 22 C 1.75929 * 90.71983 * 0.29978 * 21 20 19 23 23 N 1.28719 * 109.80375 * 359.82356 * 22 21 20 24 24 C 1.40064 * 120.19567 * 0.25368 * 12 11 10 25 25 C 1.36296 * 120.10187 * 359.48142 * 24 12 11 26 26 H 0.97000 * 119.99853 * 0.02562 * 1 2 3 27 27 H 1.08009 * 120.05149 * 359.97438 * 10 9 7 28 28 H 1.08001 * 119.95309 * 179.97438 * 11 10 9 29 29 H 1.08999 * 109.47136 * 59.99424 * 16 15 13 30 30 H 1.09001 * 109.47022 * 299.99803 * 16 15 13 31 31 H 1.08003 * 125.54038 * 359.97438 * 20 19 17 32 32 H 1.08007 * 125.09716 * 179.81921 * 22 21 20 33 33 H 1.08003 * 119.94645 * 179.74937 * 24 12 11 34 34 H 1.08007 * 120.05421 * 180.25257 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7003 1.3465 0.0006 5 1 1.8816 2.3965 -1.2125 6 1 1.8816 2.3965 1.2125 7 6 2.0076 -1.2145 0.0005 8 1 3.0484 -1.2370 0.2877 9 6 1.3532 -2.4071 -0.3741 10 6 1.8268 -3.6494 0.0923 11 6 1.1919 -4.7989 -0.2726 12 6 0.0699 -4.7465 -1.1095 13 6 -0.6135 -5.9934 -1.5021 14 8 -0.2032 -7.0638 -1.0992 15 8 -1.6935 -5.9452 -2.3069 16 6 -2.3157 -7.2110 -2.6516 17 6 -3.4989 -6.9608 -3.5507 18 8 -3.7898 -5.8266 -3.8693 19 6 -4.2978 -8.0864 -4.0398 20 6 -5.3830 -7.9234 -4.8516 21 16 -6.0449 -9.4594 -5.2078 22 6 -4.8138 -10.2424 -4.2246 23 7 -4.0271 -9.3556 -3.7232 24 6 -0.4015 -3.5141 -1.5794 25 6 0.2239 -2.3591 -1.2153 26 1 -0.4850 0.8401 -0.0004 27 1 2.6921 -3.6908 0.7373 28 1 1.5544 -5.7517 0.0841 29 1 -2.6498 -7.7112 -1.7426 30 1 -1.5930 -7.8421 -3.1689 31 1 -5.7614 -6.9780 -5.2116 32 1 -4.7308 -11.3075 -4.0657 33 1 -1.2645 -3.4787 -2.2278 34 1 -0.1427 -1.4089 -1.5748 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805519498.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:15 Heat of formation + Delta-G solvation = -59.250541 kcal Electronic energy + Delta-G solvation = -21977.239464 eV Core-core repulsion = 18353.004035 eV Total energy + Delta-G solvation = -3624.235429 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.055 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.59698 -39.55308 -38.44738 -37.37427 -35.52361 -33.93454 -31.13426 -30.49743 -29.48637 -29.32089 -26.33413 -25.44936 -22.99647 -22.03852 -20.92876 -19.94208 -19.64707 -18.51321 -17.54481 -17.08995 -16.49561 -16.25210 -16.08074 -15.45584 -15.20274 -15.08794 -14.38531 -13.97864 -13.86473 -13.78170 -13.35866 -12.98299 -12.52404 -12.49393 -12.39356 -12.08376 -11.80437 -11.39921 -11.29791 -10.97551 -10.69948 -10.34808 -10.27374 -10.23039 -10.14764 -10.02368 -9.60343 -9.42468 -9.35628 -9.34949 -7.73166 -7.62240 -7.08092 -4.66096 -0.00340 0.80780 1.13275 1.32590 2.06180 2.75830 2.86439 2.93930 2.99532 3.00371 3.05832 3.63493 3.68768 3.72071 4.23317 4.48087 4.59278 4.81084 5.04304 5.31398 5.34873 5.50993 5.54082 5.93244 6.24190 6.29252 6.75702 6.82979 6.87849 6.99610 7.01537 7.11442 7.34709 7.44121 7.68742 7.80272 7.86414 8.02323 8.37641 8.58189 8.71121 8.72471 9.83052 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.029606 B = 0.002306 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.527053 B =12141.436338 C =13004.184257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.072 3.928 3 Si 0.915 3.085 4 H -0.256 1.256 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.433 4.433 8 H 0.088 0.912 9 C 0.131 3.869 10 C -0.239 4.239 11 C -0.017 4.017 12 C -0.274 4.274 13 C 0.515 3.485 14 O -0.551 6.551 15 O -0.346 6.346 16 C 0.037 3.963 17 C 0.430 3.570 18 O -0.418 6.418 19 C -0.023 4.023 20 C -0.202 4.202 21 S 0.157 5.843 22 C 0.037 3.963 23 N -0.426 5.426 24 C -0.041 4.041 25 C -0.186 4.186 26 H 0.288 0.712 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.192 0.808 32 H 0.212 0.788 33 H 0.104 0.896 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.470 -13.505 -9.245 19.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.150 4.150 3 Si 0.738 3.262 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.460 4.460 8 H 0.106 0.894 9 C 0.128 3.872 10 C -0.259 4.259 11 C -0.036 4.036 12 C -0.277 4.277 13 C 0.368 3.632 14 O -0.445 6.445 15 O -0.263 6.263 16 C -0.038 4.038 17 C 0.302 3.698 18 O -0.289 6.289 19 C -0.156 4.156 20 C -0.344 4.344 21 S 0.412 5.588 22 C -0.264 4.264 23 N -0.138 5.138 24 C -0.060 4.060 25 C -0.205 4.205 26 H 0.100 0.900 27 H 0.120 0.880 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.209 0.791 32 H 0.228 0.772 33 H 0.122 0.878 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.136 -13.551 -9.543 20.542 hybrid contribution 0.659 1.126 0.366 1.355 sum -11.476 -12.425 -9.177 19.243 Atomic orbital electron populations 1.69752 1.08005 1.30272 1.30445 1.26171 0.94852 1.02112 0.91915 0.86132 0.81078 0.79983 0.78957 1.17969 1.19262 1.19581 1.19954 0.98478 0.91144 1.36459 0.89420 1.17865 0.90295 0.92217 0.86852 1.20675 1.04703 0.92430 1.08066 1.20344 0.92446 0.97431 0.93345 1.18179 1.04471 0.89095 1.15921 1.21653 0.76756 0.90395 0.74405 1.90704 1.66035 1.32034 1.55679 1.86665 1.43441 1.32491 1.63726 1.22822 0.94314 0.86626 1.00047 1.21306 0.83293 0.86556 0.78615 1.90631 1.65848 1.23420 1.49011 1.21088 0.98795 0.92246 1.03479 1.27037 0.99757 1.05207 1.02372 1.84074 1.31802 0.96443 1.46490 1.29451 0.94185 1.03922 0.98850 1.66936 1.26274 0.99571 1.21054 1.20694 0.97119 0.91889 0.96302 1.21021 1.00046 0.97106 1.02288 0.90020 0.88029 0.87891 0.87869 0.87872 0.79088 0.77156 0.87817 0.86010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.44 10.95 55.56 0.61 -17.83 16 2 C 0.07 1.68 5.14 -17.31 -0.09 1.59 16 3 Si 0.92 17.20 29.60 -169.99 -5.03 12.17 16 4 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 5 H -0.27 -4.97 7.11 56.52 0.40 -4.56 16 6 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 7 C -0.43 -10.75 9.04 -37.75 -0.34 -11.09 16 8 H 0.09 2.06 7.91 -52.49 -0.42 1.64 16 9 C 0.13 3.38 5.58 -106.80 -0.60 2.78 16 10 C -0.24 -5.80 9.73 -39.28 -0.38 -6.19 16 11 C -0.02 -0.41 9.52 -39.59 -0.38 -0.78 16 12 C -0.27 -6.66 5.89 -104.75 -0.62 -7.28 16 13 C 0.52 11.81 7.89 34.51 0.27 12.09 16 14 O -0.55 -13.03 16.11 -19.27 -0.31 -13.34 16 15 O -0.35 -7.20 8.98 -47.37 -0.43 -7.62 16 16 C 0.04 0.61 5.57 36.00 0.20 0.81 16 17 C 0.43 6.48 7.19 -31.01 -0.22 6.26 16 18 O -0.42 -7.40 16.83 -14.16 -0.24 -7.64 16 19 C -0.02 -0.28 6.65 -84.43 -0.56 -0.84 16 20 C -0.20 -1.85 10.64 30.11 0.32 -1.53 16 21 S 0.16 0.91 23.18 -107.50 -2.49 -1.58 16 22 C 0.04 0.25 12.45 51.46 0.64 0.89 16 23 N -0.43 -4.56 10.28 -11.01 -0.11 -4.67 16 24 C -0.04 -1.00 9.55 -39.60 -0.38 -1.38 16 25 C -0.19 -4.74 8.63 -39.27 -0.34 -5.08 16 26 H 0.29 6.23 8.29 -40.82 -0.34 5.90 16 27 H 0.10 2.26 8.06 -52.48 -0.42 1.83 16 28 H 0.10 2.31 7.63 -52.49 -0.40 1.91 16 29 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 30 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 31 H 0.19 1.56 8.02 -52.48 -0.42 1.14 16 32 H 0.21 0.57 8.06 -52.48 -0.42 0.15 16 33 H 0.10 2.40 7.59 -52.48 -0.40 2.00 16 34 H 0.12 3.15 6.15 -52.48 -0.32 2.82 16 LS Contribution 328.70 15.07 4.95 4.95 Total: -1.00 -30.79 328.70 -8.30 -39.09 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -2.78 Total: 6.21 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -2.47 Total: -9.75 kcal Atomic # 7 Polarization: -22.99 SS G_CDS: 0.50 Total: -22.50 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.97 Total: -28.60 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.03 Total: 12.17 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.49 Total: -1.58 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.79 -8.30 -39.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805519498.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.157 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds