Wall clock time and date at job start Tue Mar 31 2020 12:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86802 * 119.99881 * 2 1 4 4 H 1.48497 * 109.47132 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47266 * 299.99902 * 3 2 1 6 6 H 1.48500 * 109.47426 * 60.00172 * 3 2 1 7 7 C 1.40239 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00363 * 197.87828 * 7 2 1 9 9 C 1.41094 * 119.99916 * 17.88074 * 7 2 1 10 10 C 1.40893 * 120.10211 * 204.63950 * 9 7 2 11 11 C 1.36293 * 119.90210 * 180.02562 * 10 9 7 12 12 C 1.40075 * 120.10016 * 359.97438 * 11 10 9 13 13 C 1.47507 * 119.89955 * 179.97438 * 12 11 10 14 14 O 1.21509 * 119.99939 * 0.02562 * 13 12 11 15 15 O 1.34773 * 119.99823 * 179.97438 * 13 12 11 16 16 C 1.45199 * 117.00232 * 180.02562 * 15 13 12 17 17 C 1.50696 * 109.47258 * 179.97438 * 16 15 13 18 18 O 1.21351 * 120.00352 * 359.97438 * 17 16 15 19 19 C 1.46441 * 119.99744 * 179.97438 * 17 16 15 20 20 C 1.36506 * 122.71931 * 179.73380 * 19 17 16 21 21 S 1.71001 * 108.92184 * 179.90064 * 20 19 17 22 22 C 1.75929 * 90.71983 * 0.29978 * 21 20 19 23 23 N 1.28719 * 109.80375 * 359.82356 * 22 21 20 24 24 C 1.40064 * 120.19567 * 0.25368 * 12 11 10 25 25 C 1.36296 * 120.10187 * 359.48142 * 24 12 11 26 26 H 0.97000 * 119.99853 * 0.02562 * 1 2 3 27 27 H 1.08009 * 120.05149 * 359.97438 * 10 9 7 28 28 H 1.08001 * 119.95309 * 179.97438 * 11 10 9 29 29 H 1.08999 * 109.47136 * 59.99424 * 16 15 13 30 30 H 1.09001 * 109.47022 * 299.99803 * 16 15 13 31 31 H 1.08003 * 125.54038 * 359.97438 * 20 19 17 32 32 H 1.08007 * 125.09716 * 179.81921 * 22 21 20 33 33 H 1.08003 * 119.94645 * 179.74937 * 24 12 11 34 34 H 1.08007 * 120.05421 * 180.25257 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7003 1.3465 0.0006 5 1 1.8816 2.3965 -1.2125 6 1 1.8816 2.3965 1.2125 7 6 2.0076 -1.2145 0.0005 8 1 3.0484 -1.2370 0.2877 9 6 1.3532 -2.4071 -0.3741 10 6 1.8268 -3.6494 0.0923 11 6 1.1919 -4.7989 -0.2726 12 6 0.0699 -4.7465 -1.1095 13 6 -0.6135 -5.9934 -1.5021 14 8 -0.2032 -7.0638 -1.0992 15 8 -1.6935 -5.9452 -2.3069 16 6 -2.3157 -7.2110 -2.6516 17 6 -3.4989 -6.9608 -3.5507 18 8 -3.7898 -5.8266 -3.8693 19 6 -4.2978 -8.0864 -4.0398 20 6 -5.3830 -7.9234 -4.8516 21 16 -6.0449 -9.4594 -5.2078 22 6 -4.8138 -10.2424 -4.2246 23 7 -4.0271 -9.3556 -3.7232 24 6 -0.4015 -3.5141 -1.5794 25 6 0.2239 -2.3591 -1.2153 26 1 -0.4850 0.8401 -0.0004 27 1 2.6921 -3.6908 0.7373 28 1 1.5544 -5.7517 0.0841 29 1 -2.6498 -7.7112 -1.7426 30 1 -1.5930 -7.8421 -3.1689 31 1 -5.7614 -6.9780 -5.2116 32 1 -4.7308 -11.3075 -4.0657 33 1 -1.2645 -3.4787 -2.2278 34 1 -0.1427 -1.4089 -1.5748 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805519498.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:14 Heat of formation + Delta-G solvation = -75.896593 kcal Electronic energy + Delta-G solvation = -21977.961291 eV Core-core repulsion = 18353.004035 eV Total energy + Delta-G solvation = -3624.957256 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 317.055 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.72285 -41.02450 -39.59523 -39.17086 -37.24081 -35.77221 -32.37658 -31.87993 -31.39910 -30.59792 -28.01375 -26.44878 -24.34166 -23.40064 -22.83731 -21.71210 -20.44932 -19.47063 -19.41475 -18.62409 -17.97093 -17.69266 -17.28334 -17.01459 -16.27502 -16.23889 -15.78539 -15.58054 -15.18269 -14.97716 -14.72586 -14.36482 -14.13367 -14.01987 -13.90370 -13.53574 -13.25856 -13.08182 -12.88323 -12.69406 -12.41747 -11.86006 -11.83560 -11.47478 -11.43247 -11.16932 -11.10957 -10.88616 -10.86928 -9.96795 -9.65899 -9.55700 -8.86548 -6.56974 -0.73234 0.19784 0.24464 0.44783 0.51471 1.11912 1.34478 1.40503 1.56534 1.58834 1.83597 1.88006 2.14328 2.65648 2.75604 3.25581 3.60348 3.84017 4.01157 4.01420 4.11948 4.21153 4.30505 4.35746 4.40899 4.83681 4.90948 4.96653 5.09619 5.19078 5.28781 5.54127 5.78224 5.87982 5.94663 5.99368 6.12390 6.47325 6.48520 6.68063 6.79968 6.93044 8.08325 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.029606 B = 0.002306 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.527053 B =12141.436338 C =13004.184257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.033 3.967 3 Si 0.993 3.007 4 H -0.251 1.251 5 H -0.262 1.262 6 H -0.262 1.262 7 C -0.454 4.454 8 H 0.096 0.904 9 C 0.104 3.896 10 C -0.248 4.248 11 C -0.020 4.020 12 C -0.293 4.293 13 C 0.520 3.480 14 O -0.561 6.561 15 O -0.356 6.356 16 C 0.031 3.969 17 C 0.437 3.563 18 O -0.459 6.459 19 C -0.053 4.053 20 C -0.211 4.211 21 S 0.247 5.753 22 C 0.041 3.959 23 N -0.462 5.462 24 C -0.041 4.041 25 C -0.204 4.204 26 H 0.300 0.700 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.195 0.805 32 H 0.251 0.749 33 H 0.108 0.892 34 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.253 -14.419 -9.944 21.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.188 4.188 3 Si 0.812 3.188 4 H -0.174 1.174 5 H -0.187 1.187 6 H -0.186 1.186 7 C -0.480 4.480 8 H 0.114 0.886 9 C 0.101 3.899 10 C -0.267 4.267 11 C -0.038 4.038 12 C -0.295 4.295 13 C 0.373 3.627 14 O -0.457 6.457 15 O -0.273 6.273 16 C -0.044 4.044 17 C 0.312 3.688 18 O -0.333 6.333 19 C -0.185 4.185 20 C -0.354 4.354 21 S 0.504 5.496 22 C -0.260 4.260 23 N -0.176 5.176 24 C -0.060 4.060 25 C -0.223 4.223 26 H 0.111 0.889 27 H 0.136 0.864 28 H 0.134 0.866 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.212 0.788 32 H 0.267 0.733 33 H 0.126 0.874 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.946 -14.512 -10.252 21.984 hybrid contribution 0.727 1.257 0.509 1.539 sum -12.219 -13.255 -9.742 20.492 Atomic orbital electron populations 1.69783 1.09599 1.32017 1.29969 1.27112 0.95549 1.05382 0.90717 0.84977 0.79589 0.74936 0.79259 1.17445 1.18652 1.18642 1.20295 0.99025 0.91838 1.36861 0.88562 1.18213 0.90794 0.93412 0.87491 1.20881 1.05329 0.92126 1.08356 1.20516 0.92278 0.97924 0.93088 1.18410 1.05057 0.89698 1.16346 1.21388 0.77134 0.89721 0.74494 1.90678 1.66557 1.32193 1.56231 1.86625 1.42687 1.35051 1.62954 1.23179 0.95143 0.84981 1.01047 1.21391 0.82670 0.87227 0.77497 1.90608 1.66936 1.24984 1.50736 1.20616 1.00015 0.91923 1.05971 1.27308 0.99087 1.07792 1.01205 1.83828 1.29199 0.92733 1.43888 1.30153 0.93330 1.05114 0.97410 1.66913 1.28276 0.99436 1.22946 1.20749 0.97124 0.91901 0.96226 1.21010 1.00940 0.97013 1.03331 0.88892 0.86374 0.86596 0.87102 0.86955 0.78782 0.73348 0.87354 0.86924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.54 10.95 21.87 0.24 -38.30 16 2 C 0.03 1.51 5.14 85.36 0.44 1.95 16 3 Si 0.99 34.44 29.60 68.60 2.03 36.47 16 4 H -0.25 -8.46 7.11 99.48 0.71 -7.75 16 5 H -0.26 -8.80 7.11 99.48 0.71 -8.10 16 6 H -0.26 -8.68 7.11 99.48 0.71 -7.98 16 7 C -0.45 -22.65 9.04 23.46 0.21 -22.44 16 8 H 0.10 4.49 7.91 -2.91 -0.02 4.47 16 9 C 0.10 5.50 5.58 -21.28 -0.12 5.38 16 10 C -0.25 -12.18 9.73 22.47 0.22 -11.96 16 11 C -0.02 -0.95 9.52 22.26 0.21 -0.73 16 12 C -0.29 -14.58 5.89 -19.94 -0.12 -14.69 16 13 C 0.52 24.36 7.89 70.27 0.55 24.92 16 14 O -0.56 -26.83 16.11 19.80 0.32 -26.51 16 15 O -0.36 -15.30 8.98 -50.45 -0.45 -15.75 16 16 C 0.03 1.05 5.57 71.23 0.40 1.45 16 17 C 0.44 13.62 7.19 27.82 0.20 13.82 16 18 O -0.46 -16.98 16.83 15.54 0.26 -16.72 16 19 C -0.05 -1.24 6.65 40.61 0.27 -0.97 16 20 C -0.21 -3.60 10.64 67.41 0.72 -2.88 16 21 S 0.25 2.04 23.18 -56.49 -1.31 0.73 16 22 C 0.04 0.42 12.45 130.70 1.63 2.05 16 23 N -0.46 -9.30 10.28 -188.74 -1.94 -11.24 16 24 C -0.04 -2.08 9.55 22.26 0.21 -1.87 16 25 C -0.20 -10.78 8.63 22.47 0.19 -10.59 16 26 H 0.30 12.92 8.29 -92.71 -0.77 12.15 16 27 H 0.12 5.26 8.06 -2.91 -0.02 5.23 16 28 H 0.12 5.21 7.63 -2.91 -0.02 5.19 16 29 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 30 H 0.11 3.55 8.14 -2.39 -0.02 3.54 16 31 H 0.20 3.05 8.02 -2.91 -0.02 3.03 16 32 H 0.25 0.29 8.06 -2.91 -0.02 0.26 16 33 H 0.11 5.24 7.59 -2.91 -0.02 5.22 16 34 H 0.11 6.05 6.15 -2.91 -0.02 6.04 16 Total: -1.00 -68.40 328.70 5.32 -63.07 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: 1.16 Total: 24.82 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: 5.02 Total: -16.58 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: -1.70 Total: -49.54 kcal Atomic # 8 Polarization: -59.11 SS G_CDS: 0.13 Total: -58.99 kcal Atomic # 14 Polarization: 34.44 SS G_CDS: 2.03 Total: 36.47 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -1.31 Total: 0.73 kcal Total: -68.40 5.32 -63.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805519498.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.822 kcal (2) G-P(sol) polarization free energy of solvation -68.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds