Wall clock time and date at job start Tue Mar 31 2020 11:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31673 * 119.69888 * 2 1 4 4 C 1.32037 * 121.88269 * 180.26692 * 3 2 1 5 5 Cl 1.73596 * 119.48109 * 179.74676 * 4 3 2 6 6 C 1.38687 * 121.03712 * 359.77042 * 4 3 2 7 7 Cl 1.73591 * 120.36029 * 179.97438 * 6 4 3 8 8 C 1.38341 * 119.27313 * 359.97438 * 6 4 3 9 9 C 1.39573 * 119.70009 * 179.77144 * 2 1 3 10 10 C 1.47664 * 120.53996 * 0.02562 * 9 2 1 11 11 O 1.21478 * 120.00318 * 353.50062 * 10 9 2 12 12 O 1.34718 * 119.99769 * 173.50310 * 10 9 2 13 13 C 1.45200 * 117.00077 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47025 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.46782 * 180.02562 * 14 13 12 16 16 C 1.50708 * 109.47036 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99630 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00014 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99998 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99883 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46906 * 90.00244 * 20 18 16 22 22 H 1.48501 * 109.46905 * 209.99740 * 20 18 16 23 23 H 1.48496 * 109.47015 * 329.99912 * 20 18 16 24 24 H 1.09012 * 109.47444 * 263.65079 * 1 2 3 25 25 H 1.08998 * 109.47587 * 23.65364 * 1 2 3 26 26 H 1.09000 * 109.47143 * 143.65602 * 1 2 3 27 27 H 1.08000 * 120.85246 * 180.02562 * 8 6 4 28 28 H 1.08999 * 109.47030 * 300.00160 * 13 12 10 29 29 H 1.09002 * 109.47151 * 59.99777 * 13 12 10 30 30 H 1.08999 * 109.47418 * 300.00009 * 14 13 12 31 31 H 1.08993 * 109.47108 * 60.00538 * 14 13 12 32 32 H 1.09009 * 109.47377 * 299.99744 * 15 14 13 33 33 H 1.08998 * 109.47556 * 60.00303 * 15 14 13 34 34 H 0.96996 * 119.99910 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1438 0.0000 4 6 3.4787 1.1941 -0.0052 5 17 4.2748 2.7367 -0.0116 6 6 4.2386 0.0339 -0.0062 7 17 5.9723 0.1205 -0.0138 8 6 3.5997 -1.1932 -0.0011 9 6 2.1985 -1.2124 0.0048 10 6 1.4655 -2.4942 0.0094 11 8 0.2566 -2.5023 0.1280 12 8 2.1376 -3.6548 -0.1180 13 6 1.3524 -4.8762 -0.1045 14 6 2.2817 -6.0816 -0.2603 15 6 1.4543 -7.3684 -0.2468 16 6 2.3696 -8.5559 -0.3996 17 1 3.4349 -8.4074 -0.4971 18 6 1.8471 -9.8317 -0.4150 19 7 0.5499 -10.0125 -0.2958 20 14 2.9816 -11.3035 -0.6052 21 1 3.4203 -11.7668 0.7358 22 1 2.2573 -12.4008 -1.2955 23 1 4.1689 -10.9128 -1.4069 24 1 -0.3634 -0.1137 1.0214 25 1 -0.3634 0.9413 -0.4123 26 1 -0.3633 -0.8278 -0.6090 27 1 4.1662 -2.1126 -0.0013 28 1 0.8141 -4.9516 0.8402 29 1 0.6392 -4.8587 -0.9287 30 1 2.8197 -6.0059 -1.2053 31 1 2.9951 -6.0993 0.5635 32 1 0.9159 -7.4444 0.6980 33 1 0.7411 -7.3506 -1.0709 34 1 0.1822 -10.9100 -0.3069 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805723220.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:54 Heat of formation + Delta-G solvation = -92.523616 kcal Electronic energy + Delta-G solvation = -20667.015942 eV Core-core repulsion = 17036.861128 eV Total energy + Delta-G solvation = -3630.154814 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.32100 -40.97133 -38.26647 -37.91229 -37.80296 -35.95580 -34.41054 -33.74342 -33.50015 -29.51260 -28.69504 -26.41678 -25.11696 -23.82905 -22.52427 -22.13706 -19.37674 -18.80934 -18.51643 -17.92950 -17.83852 -17.63200 -16.48475 -16.45707 -16.10479 -15.57036 -14.96964 -14.79749 -14.35122 -14.25273 -14.10806 -13.80178 -13.71067 -13.42709 -13.24549 -12.82674 -12.78260 -12.64900 -12.50273 -12.38082 -12.18923 -12.07987 -11.73269 -11.52571 -11.39967 -11.27170 -11.22667 -11.05288 -10.55619 -10.13844 -8.20661 -6.31493 -1.10865 -0.47103 0.29513 0.63318 1.10879 1.36604 1.43586 1.43683 1.55033 2.09722 2.42171 2.86367 3.12030 3.13762 3.20218 3.36536 3.69129 4.04070 4.05587 4.06855 4.38023 4.44278 4.62396 4.64510 4.74651 4.83187 4.84537 5.07761 5.15793 5.39633 5.52334 5.67108 5.82594 6.11167 6.20761 6.48469 6.84903 7.38078 8.91383 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.021660 B = 0.002456 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.401649 B =11399.142432 C =12654.443097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.216 3.784 3 N -0.479 5.479 4 C 0.212 3.788 5 Cl 0.011 6.989 6 C -0.101 4.101 7 Cl -0.012 7.012 8 C 0.017 3.983 9 C -0.171 4.171 10 C 0.514 3.486 11 O -0.506 6.506 12 O -0.348 6.348 13 C 0.080 3.920 14 C -0.095 4.095 15 C 0.025 3.975 16 C -0.542 4.542 17 H 0.065 0.935 18 C -0.001 4.001 19 N -0.933 5.933 20 Si 0.965 3.035 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.262 1.262 24 H 0.099 0.901 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.187 0.813 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.068 0.932 32 H -0.002 1.002 33 H -0.002 1.002 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.734 25.576 0.668 26.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.079 3.921 3 N -0.192 5.192 4 C 0.047 3.953 5 Cl 0.040 6.960 6 C -0.131 4.131 7 Cl 0.017 6.983 8 C -0.009 4.009 9 C -0.175 4.175 10 C 0.358 3.642 11 O -0.397 6.397 12 O -0.265 6.265 13 C 0.007 3.993 14 C -0.133 4.133 15 C -0.012 4.012 16 C -0.580 4.580 17 H 0.083 0.917 18 C -0.198 4.198 19 N -0.573 5.573 20 Si 0.790 3.210 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.186 1.186 24 H 0.117 0.883 25 H 0.113 0.887 26 H 0.117 0.883 27 H 0.204 0.796 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.016 0.984 33 H 0.017 0.983 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.013 26.329 0.703 27.257 hybrid contribution 0.728 -1.582 -0.021 1.741 sum 7.742 24.748 0.683 25.939 Atomic orbital electron populations 1.21198 0.85155 1.05232 1.05270 1.21744 0.98599 0.84831 0.86954 1.67276 1.07046 1.28901 1.15944 1.22068 0.89709 0.88424 0.95110 1.98455 1.76306 1.25659 1.95556 1.21502 0.88555 0.93292 1.09779 1.98429 1.04804 1.98473 1.96635 1.22088 0.92748 0.98432 0.87660 1.19962 0.93852 0.91867 1.11840 1.20748 0.85716 0.84476 0.73220 1.90825 1.15257 1.87812 1.45762 1.86497 1.42212 1.15004 1.82747 1.23248 0.93950 0.79619 1.02490 1.21469 0.98063 0.91142 1.02606 1.18935 0.94994 0.91645 0.95598 1.21637 0.94396 0.91980 1.49943 0.91682 1.25971 0.96599 1.02468 0.94808 1.70088 1.13023 1.22904 1.51320 0.85439 0.78811 0.78229 0.78540 1.19817 1.20969 1.18564 0.88273 0.88745 0.88315 0.79557 0.91206 0.91205 0.91374 0.91308 0.98362 0.98350 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 8.87 71.23 0.63 -1.39 16 2 C 0.22 4.46 6.82 42.90 0.29 4.75 16 3 N -0.48 -9.94 10.23 -173.65 -1.78 -11.72 16 4 C 0.21 4.03 7.28 84.77 0.62 4.65 16 5 Cl 0.01 0.18 28.10 -2.72 -0.08 0.11 16 6 C -0.10 -1.77 6.34 22.40 0.14 -1.63 16 7 Cl -0.01 -0.19 27.97 -2.72 -0.08 -0.27 16 8 C 0.02 0.30 9.53 22.75 0.22 0.52 16 9 C -0.17 -3.66 5.89 -20.01 -0.12 -3.78 16 10 C 0.51 13.43 7.83 70.31 0.55 13.98 16 11 O -0.51 -14.87 13.16 19.91 0.26 -14.61 16 12 O -0.35 -9.82 9.57 -56.28 -0.54 -10.36 16 13 C 0.08 2.63 5.48 71.98 0.39 3.02 16 14 C -0.10 -3.62 5.53 30.59 0.17 -3.45 16 15 C 0.03 1.27 4.97 29.85 0.15 1.42 16 16 C -0.54 -29.62 9.11 25.60 0.23 -29.39 16 17 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 18 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 19 N -0.93 -55.59 13.29 21.45 0.28 -55.30 16 20 Si 0.97 43.04 29.54 68.60 2.03 45.07 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 23 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 24 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 25 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.10 2.03 5.86 -2.39 -0.01 2.02 16 27 H 0.19 2.84 7.72 -2.91 -0.02 2.82 16 28 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.00 -0.11 8.14 -2.38 -0.02 -0.13 16 33 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 34 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -61.58 331.04 4.98 -56.60 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: 1.14 Total: 1.35 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 3.74 Total: -10.86 kcal Atomic # 7 Polarization: -65.53 SS G_CDS: -1.49 Total: -67.02 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.28 Total: -24.97 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 17 Polarization: -0.01 SS G_CDS: -0.15 Total: -0.16 kcal Total: -61.58 4.98 -56.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805723220.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.927 kcal (2) G-P(sol) polarization free energy of solvation -61.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds