Wall clock time and date at job start Tue Mar 31 2020 11:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00110 * 2 1 4 4 H 1.48502 * 109.46919 * 270.00091 * 3 2 1 5 5 H 1.48494 * 109.46883 * 30.00189 * 3 2 1 6 6 H 1.48499 * 109.46952 * 149.99804 * 3 2 1 7 7 C 1.37879 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99899 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00313 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47509 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47242 * 180.02562 * 10 9 7 12 12 O 1.45201 * 109.47419 * 180.02562 * 11 10 9 13 13 C 1.34784 * 117.00180 * 179.97438 * 12 11 10 14 14 O 1.21534 * 120.00211 * 359.97438 * 13 12 11 15 15 C 1.47157 * 119.99654 * 179.97438 * 13 12 11 16 16 C 1.40513 * 120.20719 * 269.99782 * 15 13 12 17 17 N 1.38841 * 120.16733 * 359.97438 * 16 15 13 18 18 C 1.38811 * 119.66459 * 180.02562 * 16 15 13 19 19 C 1.38189 * 120.09801 * 0.02562 * 18 16 15 20 20 Cl 1.73604 * 119.78747 * 179.97438 * 19 18 16 21 21 C 1.38671 * 120.42566 * 359.97438 * 19 18 16 22 22 C 1.37879 * 120.33299 * 359.67890 * 21 19 18 23 23 Cl 1.73601 * 120.05230 * 180.32204 * 22 21 19 24 24 H 0.96998 * 120.00039 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47125 * 59.99965 * 9 7 2 26 26 H 1.09004 * 109.47115 * 300.00428 * 9 7 2 27 27 H 1.08996 * 109.47254 * 60.00104 * 10 9 7 28 28 H 1.09007 * 109.46896 * 299.99925 * 10 9 7 29 29 H 1.08998 * 109.47592 * 59.99855 * 11 10 9 30 30 H 1.08999 * 109.47084 * 299.99957 * 11 10 9 31 31 H 0.96997 * 120.00207 * 0.02562 * 17 16 15 32 32 H 0.97002 * 120.00114 * 180.02562 * 17 16 15 33 33 H 1.07999 * 119.95464 * 179.97438 * 18 16 15 34 34 H 1.08004 * 119.82781 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 6 5.5514 -2.6367 -0.0009 12 8 6.0354 -4.0057 -0.0014 13 6 7.3717 -4.1823 -0.0020 14 8 8.1120 -3.2185 -0.0025 15 6 7.9340 -5.5421 -0.0019 16 6 8.2048 -6.1952 1.2124 17 7 7.9436 -5.5604 2.4193 18 6 8.7357 -7.4777 1.1993 19 6 8.9966 -8.1074 -0.0027 20 17 9.6613 -9.7112 -0.0097 21 6 8.7309 -7.4666 -1.2035 22 6 8.1969 -6.1955 -1.2111 23 17 7.8593 -5.4033 -2.7185 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6805 0.8889 26 1 3.8745 -0.6801 -0.8911 27 1 3.6578 -3.1507 -0.8907 28 1 3.6584 -3.1503 0.8893 29 1 5.9148 -2.1228 0.8890 30 1 5.9148 -2.1230 -0.8909 31 1 7.5729 -4.6641 2.4256 32 1 8.1318 -6.0133 3.2562 33 1 8.9460 -7.9838 2.1299 34 1 8.9390 -7.9677 -2.1373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811322264.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:43 Heat of formation + Delta-G solvation = -87.572823 kcal Electronic energy + Delta-G solvation = -20898.291274 eV Core-core repulsion = 17268.351143 eV Total energy + Delta-G solvation = -3629.940131 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.87797 -39.40151 -37.19748 -37.01870 -36.51909 -34.91201 -34.11638 -31.98863 -31.39596 -29.51526 -27.67247 -24.83199 -23.16660 -22.86077 -21.10389 -20.29718 -18.40893 -17.98246 -17.71902 -17.12656 -16.53202 -16.18187 -15.52557 -15.28809 -14.99260 -14.53401 -14.26072 -14.03923 -13.67697 -12.83473 -12.80482 -12.69639 -12.56574 -12.48218 -12.26490 -11.97127 -11.59458 -11.34665 -11.10339 -11.02142 -10.79076 -10.63360 -10.50848 -10.06095 -9.86177 -9.76624 -9.28310 -9.23731 -8.59266 -8.26730 -6.09361 -4.08596 0.31769 0.80265 1.32770 1.80389 1.93330 2.60390 2.99550 3.21328 3.27828 3.35499 3.38167 4.40499 4.43509 4.54418 4.54821 4.62634 4.80416 5.23596 5.25900 5.37279 5.39906 5.47460 5.59476 5.77792 5.80439 6.21555 6.33920 6.54785 6.71167 6.73756 7.08302 7.17119 7.28441 7.62851 7.72425 8.47159 8.94943 9.51967 11.03797 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.024391 B = 0.002635 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.668938 B =10623.333635 C =10923.757629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.074 0.926 9 C -0.010 4.010 10 C -0.101 4.101 11 C 0.063 3.937 12 O -0.343 6.343 13 C 0.512 3.488 14 O -0.490 6.490 15 C -0.179 4.179 16 C 0.286 3.714 17 N -0.853 5.853 18 C -0.190 4.190 19 C 0.044 3.956 20 Cl -0.051 7.051 21 C -0.165 4.165 22 C 0.061 3.939 23 Cl -0.036 7.036 24 H 0.264 0.736 25 H 0.019 0.981 26 H 0.015 0.985 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.407 0.593 32 H 0.410 0.590 33 H 0.147 0.853 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.624 -18.316 2.002 28.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.092 0.908 9 C -0.047 4.047 10 C -0.139 4.139 11 C -0.010 4.010 12 O -0.259 6.259 13 C 0.354 3.646 14 O -0.377 6.377 15 C -0.187 4.187 16 C 0.175 3.825 17 N -0.389 5.389 18 C -0.214 4.214 19 C 0.016 3.984 20 Cl -0.022 7.022 21 C -0.187 4.187 22 C 0.033 3.967 23 Cl -0.006 7.006 24 H 0.074 0.926 25 H 0.037 0.963 26 H 0.033 0.967 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.236 0.764 32 H 0.240 0.760 33 H 0.165 0.835 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 21.670 -17.930 1.871 28.188 hybrid contribution 0.308 1.180 0.154 1.229 sum 21.978 -16.751 2.026 27.707 Atomic orbital electron populations 1.69905 1.06283 1.26998 1.50770 1.25015 0.94756 0.99168 0.94454 0.86788 0.80346 0.83598 0.78637 1.20176 1.21274 1.18994 1.21044 0.88997 0.94680 1.51272 0.90777 1.19520 0.97579 0.90968 0.96681 1.21568 0.88468 1.00861 1.02970 1.23603 0.97314 0.77827 1.02282 1.86715 1.22148 1.34402 1.82616 1.20683 0.81898 0.88824 0.73193 1.90892 1.60788 1.41850 1.44200 1.18411 1.13082 0.95010 0.92161 1.17110 0.90080 0.90175 0.85118 1.42387 1.71218 1.20428 1.04900 1.20385 1.08498 0.94281 0.98190 1.20501 0.97013 0.87134 0.93731 1.98402 1.83535 1.21348 1.98901 1.20525 1.06057 0.93801 0.98300 1.20350 0.97383 0.92473 0.86499 1.98438 1.93184 1.79419 1.29597 0.92620 0.96308 0.96672 0.91374 0.91488 0.91390 0.91238 0.76360 0.76004 0.83524 0.83216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.57 13.96 55.43 0.77 -26.79 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 7 C -0.52 -14.69 9.66 -34.44 -0.33 -15.03 16 8 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 9 C -0.01 -0.23 4.04 -27.89 -0.11 -0.35 16 10 C -0.10 -1.97 5.53 -26.73 -0.15 -2.12 16 11 C 0.06 1.06 5.48 37.16 0.20 1.26 16 12 O -0.34 -5.48 10.23 -40.72 -0.42 -5.89 16 13 C 0.51 7.66 5.18 34.35 0.18 7.84 16 14 O -0.49 -8.35 16.90 -19.29 -0.33 -8.68 16 15 C -0.18 -2.22 5.77 -104.79 -0.60 -2.83 16 16 C 0.29 2.77 6.76 -83.62 -0.57 2.20 16 17 N -0.85 -6.51 8.99 32.55 0.29 -6.22 16 18 C -0.19 -1.50 9.65 -39.39 -0.38 -1.88 16 19 C 0.04 0.37 6.32 -39.44 -0.25 0.12 16 20 Cl -0.05 -0.37 28.94 -51.86 -1.50 -1.87 16 21 C -0.17 -1.52 9.58 -39.55 -0.38 -1.90 16 22 C 0.06 0.70 6.35 -39.08 -0.25 0.45 16 23 Cl -0.04 -0.43 28.04 -51.86 -1.45 -1.89 16 24 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 26 H 0.01 0.35 7.57 -51.93 -0.39 -0.05 16 27 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.41 3.51 7.68 -40.82 -0.31 3.20 16 32 H 0.41 1.82 8.83 -40.82 -0.36 1.46 16 33 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.15 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 331.33 15.07 4.99 4.99 Total: -1.00 -31.96 331.33 -8.61 -40.57 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -3.56 Total: -0.67 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -2.74 Total: -10.36 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 1.07 Total: -33.01 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.74 Total: -14.57 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -2.95 Total: -3.76 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.96 -8.61 -40.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811322264.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.005 kcal (2) G-P(sol) polarization free energy of solvation -31.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds