Wall clock time and date at job start Tue Mar 31 2020 11:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00110 * 2 1 4 4 H 1.48502 * 109.46919 * 270.00091 * 3 2 1 5 5 H 1.48494 * 109.46883 * 30.00189 * 3 2 1 6 6 H 1.48499 * 109.46952 * 149.99804 * 3 2 1 7 7 C 1.37879 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99899 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00313 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47509 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47242 * 180.02562 * 10 9 7 12 12 O 1.45201 * 109.47419 * 180.02562 * 11 10 9 13 13 C 1.34784 * 117.00180 * 179.97438 * 12 11 10 14 14 O 1.21534 * 120.00211 * 359.97438 * 13 12 11 15 15 C 1.47157 * 119.99654 * 179.97438 * 13 12 11 16 16 C 1.40513 * 120.20719 * 269.99782 * 15 13 12 17 17 N 1.38841 * 120.16733 * 359.97438 * 16 15 13 18 18 C 1.38811 * 119.66459 * 180.02562 * 16 15 13 19 19 C 1.38189 * 120.09801 * 0.02562 * 18 16 15 20 20 Cl 1.73604 * 119.78747 * 179.97438 * 19 18 16 21 21 C 1.38671 * 120.42566 * 359.97438 * 19 18 16 22 22 C 1.37879 * 120.33299 * 359.67890 * 21 19 18 23 23 Cl 1.73601 * 120.05230 * 180.32204 * 22 21 19 24 24 H 0.96998 * 120.00039 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47125 * 59.99965 * 9 7 2 26 26 H 1.09004 * 109.47115 * 300.00428 * 9 7 2 27 27 H 1.08996 * 109.47254 * 60.00104 * 10 9 7 28 28 H 1.09007 * 109.46896 * 299.99925 * 10 9 7 29 29 H 1.08998 * 109.47592 * 59.99855 * 11 10 9 30 30 H 1.08999 * 109.47084 * 299.99957 * 11 10 9 31 31 H 0.96997 * 120.00207 * 0.02562 * 17 16 15 32 32 H 0.97002 * 120.00114 * 180.02562 * 17 16 15 33 33 H 1.07999 * 119.95464 * 179.97438 * 18 16 15 34 34 H 1.08004 * 119.82781 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 6 5.5514 -2.6367 -0.0009 12 8 6.0354 -4.0057 -0.0014 13 6 7.3717 -4.1823 -0.0020 14 8 8.1120 -3.2185 -0.0025 15 6 7.9340 -5.5421 -0.0019 16 6 8.2048 -6.1952 1.2124 17 7 7.9436 -5.5604 2.4193 18 6 8.7357 -7.4777 1.1993 19 6 8.9966 -8.1074 -0.0027 20 17 9.6613 -9.7112 -0.0097 21 6 8.7309 -7.4666 -1.2035 22 6 8.1969 -6.1955 -1.2111 23 17 7.8593 -5.4033 -2.7185 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6805 0.8889 26 1 3.8745 -0.6801 -0.8911 27 1 3.6578 -3.1507 -0.8907 28 1 3.6584 -3.1503 0.8893 29 1 5.9148 -2.1228 0.8890 30 1 5.9148 -2.1230 -0.8909 31 1 7.5729 -4.6641 2.4256 32 1 8.1318 -6.0133 3.2562 33 1 8.9460 -7.9838 2.1299 34 1 8.9390 -7.9677 -2.1373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811322264.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:42 Heat of formation + Delta-G solvation = -106.572248 kcal Electronic energy + Delta-G solvation = -20899.115151 eV Core-core repulsion = 17268.351143 eV Total energy + Delta-G solvation = -3630.764008 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.91052 -40.32020 -37.98417 -37.89196 -37.62944 -35.94788 -35.59885 -33.90611 -32.30368 -30.25711 -29.40006 -25.97246 -24.50422 -23.79712 -22.21346 -21.98932 -19.34968 -19.04063 -18.74153 -18.61608 -17.90458 -17.35856 -16.36653 -16.24057 -16.06459 -15.77639 -15.41503 -15.26422 -14.86922 -14.76673 -13.95913 -13.90231 -13.65734 -13.47330 -13.17469 -13.11993 -12.87131 -12.62982 -12.38187 -12.21560 -12.07063 -12.05159 -11.77859 -11.61163 -11.43396 -11.37337 -11.34838 -10.78161 -10.00318 -8.94988 -8.30626 -6.35748 -0.45492 0.08946 0.58338 0.79857 1.05067 1.36987 1.37881 1.49553 1.53235 2.22446 2.35199 2.57322 3.04589 3.43181 3.78770 3.81432 3.92038 3.96890 3.98016 4.12973 4.33951 4.48113 4.68272 4.71640 4.76198 4.93609 4.95105 5.13128 5.19890 5.43959 5.47488 5.61270 6.03234 6.25042 6.45897 6.57958 6.72183 7.28729 8.85979 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.024391 B = 0.002635 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.668938 B =10623.333635 C =10923.757629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.949 3.051 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.243 1.243 7 C -0.534 4.534 8 H 0.035 0.965 9 C -0.008 4.008 10 C -0.092 4.092 11 C 0.071 3.929 12 O -0.348 6.348 13 C 0.520 3.480 14 O -0.515 6.515 15 C -0.211 4.211 16 C 0.286 3.714 17 N -0.844 5.844 18 C -0.178 4.178 19 C 0.046 3.954 20 Cl -0.036 7.036 21 C -0.163 4.163 22 C 0.049 3.951 23 Cl -0.052 7.052 24 H 0.267 0.733 25 H 0.029 0.971 26 H 0.023 0.977 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.403 0.597 32 H 0.425 0.575 33 H 0.178 0.822 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.030 -18.946 2.922 30.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.192 4.192 3 Si 0.772 3.228 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.167 1.167 7 C -0.572 4.572 8 H 0.053 0.947 9 C -0.046 4.046 10 C -0.129 4.129 11 C -0.002 4.002 12 O -0.264 6.264 13 C 0.363 3.637 14 O -0.403 6.403 15 C -0.219 4.219 16 C 0.174 3.826 17 N -0.381 5.381 18 C -0.201 4.201 19 C 0.018 3.982 20 Cl -0.006 7.006 21 C -0.185 4.185 22 C 0.021 3.979 23 Cl -0.023 7.023 24 H 0.076 0.924 25 H 0.047 0.953 26 H 0.041 0.959 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.231 0.769 32 H 0.259 0.741 33 H 0.195 0.805 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 24.096 -18.596 2.818 30.567 hybrid contribution -0.453 1.187 -0.091 1.273 sum 23.643 -17.409 2.727 29.487 Atomic orbital electron populations 1.70059 1.08313 1.28260 1.52391 1.26006 0.95631 1.03530 0.94033 0.85671 0.79637 0.78196 0.79259 1.19262 1.20907 1.16661 1.21394 0.91715 0.93319 1.50734 0.94705 1.19445 0.94278 0.93572 0.97294 1.21318 0.90564 0.98468 1.02587 1.23311 0.95301 0.78685 1.02950 1.86704 1.23302 1.33542 1.82866 1.21088 0.80982 0.89724 0.71866 1.90868 1.61006 1.43023 1.45437 1.18430 1.15444 0.94317 0.93684 1.17223 0.89862 0.90671 0.84816 1.42416 1.70404 1.20198 1.05100 1.20691 1.06752 0.93345 0.99307 1.20612 0.96339 0.87685 0.93609 1.98415 1.83190 1.20166 1.98870 1.20688 1.05339 0.92966 0.99467 1.20445 0.98588 0.93249 0.85643 1.98426 1.93419 1.79881 1.30555 0.92399 0.95280 0.95860 0.92207 0.91578 0.90136 0.91202 0.76858 0.74146 0.80515 0.81746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.45 13.96 21.45 0.30 -59.15 16 2 C 0.00 0.29 5.47 84.66 0.46 0.75 16 3 Si 0.95 43.74 27.47 68.60 1.88 45.63 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 6 H -0.24 -10.27 6.54 99.48 0.65 -9.62 16 7 C -0.53 -30.57 9.66 25.60 0.25 -30.32 16 8 H 0.03 2.19 7.99 -2.91 -0.02 2.17 16 9 C -0.01 -0.39 4.04 29.84 0.12 -0.27 16 10 C -0.09 -3.54 5.53 30.59 0.17 -3.37 16 11 C 0.07 2.32 5.48 71.98 0.39 2.72 16 12 O -0.35 -10.91 10.23 -56.96 -0.58 -11.49 16 13 C 0.52 15.23 5.18 70.16 0.36 15.59 16 14 O -0.51 -17.26 16.90 19.72 0.33 -16.93 16 15 C -0.21 -5.02 5.77 -19.97 -0.12 -5.14 16 16 C 0.29 4.97 6.76 38.72 0.26 5.23 16 17 N -0.84 -11.13 8.99 -50.95 -0.46 -11.59 16 18 C -0.18 -2.28 9.65 22.40 0.22 -2.07 16 19 C 0.05 0.65 6.32 22.36 0.14 0.79 16 20 Cl -0.04 -0.42 28.94 -2.72 -0.08 -0.50 16 21 C -0.16 -2.73 9.58 22.29 0.21 -2.52 16 22 C 0.05 1.08 6.35 22.59 0.14 1.22 16 23 Cl -0.05 -1.26 28.04 -2.72 -0.08 -1.33 16 24 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 25 H 0.03 1.27 7.20 -2.38 -0.02 1.26 16 26 H 0.02 1.03 7.57 -2.38 -0.02 1.01 16 27 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 29 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.40 6.33 7.68 -92.71 -0.71 5.62 16 32 H 0.43 2.63 8.83 -92.71 -0.82 1.81 16 33 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 34 H 0.17 2.16 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -69.71 331.33 3.52 -66.19 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -0.42 Total: 6.55 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: 2.62 Total: -17.38 kcal Atomic # 7 Polarization: -70.58 SS G_CDS: -0.16 Total: -70.74 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.25 Total: -28.42 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.88 Total: 45.63 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -0.15 Total: -1.83 kcal Total: -69.71 3.52 -66.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811322264.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.383 kcal (2) G-P(sol) polarization free energy of solvation -69.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds