Wall clock time and date at job start Tue Mar 31 2020 12:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38420 * 122.53745 * 2 1 4 4 C 1.33400 * 114.91752 * 179.76143 * 3 2 1 5 5 S 1.76195 * 125.20205 * 180.20770 * 4 3 2 6 6 O 1.42104 * 106.40001 * 203.82501 * 5 4 3 7 7 O 1.42106 * 106.40321 * 336.74249 * 5 4 3 8 8 N 1.65603 * 107.22045 * 90.28682 * 5 4 3 9 9 C 1.34772 * 119.99738 * 64.99733 * 8 5 4 10 10 O 1.21280 * 120.00585 * 0.02562 * 9 8 5 11 11 C 1.50703 * 119.99823 * 180.02562 * 9 8 5 12 12 C 1.52998 * 109.47214 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.47214 * 179.97438 * 12 11 9 14 14 H 1.08003 * 119.99784 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99938 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99622 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00042 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47066 * 90.00666 * 17 15 13 19 19 H 1.48498 * 109.47072 * 210.00483 * 17 15 13 20 20 H 1.48499 * 109.47199 * 330.00331 * 17 15 13 21 21 S 1.75884 * 109.59088 * 0.47825 * 4 3 2 22 22 C 1.33392 * 122.53725 * 180.28672 * 2 1 3 23 23 C 1.50692 * 125.20364 * 359.97438 * 22 2 1 24 24 H 1.09002 * 109.47152 * 269.71223 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.71324 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.71304 * 1 2 3 27 27 H 1.07992 * 122.54494 * 359.97438 * 3 2 1 28 28 H 0.96999 * 119.99409 * 244.99928 * 8 5 4 29 29 H 1.09008 * 109.46894 * 300.00154 * 11 9 8 30 30 H 1.08996 * 109.46899 * 59.99673 * 11 9 8 31 31 H 1.09000 * 109.46537 * 299.99545 * 12 11 9 32 32 H 1.09003 * 109.47391 * 59.99644 * 12 11 9 33 33 H 0.97005 * 119.99424 * 179.97438 * 16 15 13 34 34 H 1.09001 * 109.47664 * 89.99824 * 23 22 2 35 35 H 1.09001 * 109.46953 * 209.99984 * 23 22 2 36 36 H 1.09002 * 109.47099 * 329.99597 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1669 0.0000 4 6 3.5737 0.9900 0.0050 5 16 4.7713 2.2824 0.0116 6 8 5.9609 1.7298 -0.5351 7 8 4.1276 3.4288 -0.5277 8 7 5.1041 2.6345 1.5952 9 6 5.6950 1.7124 2.3806 10 8 5.9835 0.6250 1.9277 11 6 5.9973 2.0326 3.8219 12 6 6.6634 0.8247 4.4838 13 6 6.9663 1.1451 5.9249 14 1 6.7097 2.1136 6.3282 15 6 7.5719 0.2022 6.7281 16 7 7.8357 0.4817 7.9859 17 14 8.0163 -1.4726 6.0303 18 1 9.3916 -1.4270 5.4720 19 1 7.9537 -2.4908 7.1094 20 1 7.0571 -1.8312 4.9550 21 16 3.9386 -0.7305 -0.0037 22 6 2.2245 -1.1245 -0.0056 23 6 1.6537 -2.5191 -0.0121 24 1 -0.3633 -0.0052 1.0277 25 1 -0.3633 -0.8874 -0.5183 26 1 -0.3633 0.8926 -0.5094 27 1 1.7965 2.1463 -0.0004 28 1 4.8736 3.5043 1.9573 29 1 6.6692 2.8896 3.8705 30 1 5.0699 2.2679 4.3440 31 1 5.9918 -0.0324 4.4352 32 1 7.5909 0.5897 3.9615 33 1 8.2614 -0.1818 8.5511 34 1 1.5156 -2.8506 -1.0412 35 1 2.3399 -3.1949 0.4983 36 1 0.6926 -2.5207 0.5022 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813081269.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:33 Heat of formation + Delta-G solvation = -93.623752 kcal Electronic energy + Delta-G solvation = -22026.680610 eV Core-core repulsion = 18536.398598 eV Total energy + Delta-G solvation = -3490.282012 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -39.84533 -38.80417 -37.30838 -36.05975 -34.37422 -33.65242 -32.69408 -31.37816 -29.87191 -26.50960 -26.03106 -23.31340 -22.41841 -20.30716 -19.87513 -18.89157 -18.28237 -17.76207 -17.40484 -16.56766 -16.28004 -15.52336 -15.04179 -14.77267 -14.37467 -14.20962 -14.02777 -13.67714 -13.20381 -13.02589 -12.93701 -12.82312 -12.61637 -12.37639 -12.33776 -12.29127 -12.16697 -12.07879 -11.55084 -11.44589 -11.06900 -10.83738 -10.76791 -10.39869 -10.19539 -9.92630 -9.66312 -9.28359 -9.14173 -8.57578 -8.52062 -6.09560 -4.09394 -0.00907 0.37555 1.30316 1.68336 2.15331 2.33703 2.76116 3.33205 3.40224 3.47971 3.48722 4.30101 4.42697 4.44458 4.72831 4.76555 4.87894 5.10235 5.12512 5.14909 5.19765 5.25722 5.32267 5.47607 5.55822 5.61976 5.84339 5.89008 5.95986 6.17203 6.42520 6.73767 7.22268 7.29198 7.63949 7.79314 8.43456 8.92426 9.52697 11.03041 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.014488 B = 0.004306 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.217207 B = 6501.688386 C = 7512.854773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.144 4.144 3 C 0.012 3.988 4 C -0.799 4.799 5 S 2.705 3.295 6 O -0.928 6.928 7 O -0.948 6.948 8 N -1.056 6.056 9 C 0.528 3.472 10 O -0.486 6.486 11 C -0.122 4.122 12 C -0.003 4.003 13 C -0.528 4.528 14 H 0.074 0.926 15 C 0.071 3.929 16 N -0.901 5.901 17 Si 0.876 3.124 18 H -0.275 1.275 19 H -0.288 1.288 20 H -0.261 1.261 21 S 0.271 5.729 22 C -0.156 4.156 23 C -0.091 4.091 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.152 0.848 28 H 0.434 0.566 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.026 0.974 32 H 0.024 0.976 33 H 0.264 0.736 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.532 0.066 -17.258 23.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.157 4.157 3 C -0.025 4.025 4 C -1.002 5.002 5 S 2.794 3.206 6 O -0.918 6.918 7 O -0.938 6.938 8 N -0.823 5.823 9 C 0.317 3.683 10 O -0.357 6.357 11 C -0.164 4.164 12 C -0.041 4.041 13 C -0.565 4.565 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.539 5.539 17 Si 0.703 3.297 18 H -0.201 1.201 19 H -0.214 1.214 20 H -0.185 1.185 21 S 0.541 5.459 22 C -0.277 4.277 23 C -0.149 4.149 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.170 0.830 28 H 0.271 0.729 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.441 -1.341 -18.138 22.615 hybrid contribution -1.571 0.100 0.317 1.606 sum -15.012 -1.241 -17.821 23.334 Atomic orbital electron populations 1.20516 0.89261 1.02886 1.02526 1.18960 0.97856 0.91423 1.07440 1.19788 0.90429 1.00161 0.92095 1.35429 1.15695 1.18773 1.30325 1.01778 0.73455 0.72936 0.72437 1.93650 1.43849 1.79197 1.75090 1.93616 1.77167 1.47480 1.75549 1.55157 1.68622 1.25793 1.32711 1.21735 0.73449 0.82705 0.90458 1.90824 1.48093 1.21898 1.74862 1.21856 1.03479 1.03854 0.87179 1.19463 0.96211 0.92425 0.96021 1.21047 1.40257 1.02170 0.93077 0.90768 1.24957 0.94914 0.98573 0.94639 1.69908 1.42704 1.35303 1.06030 0.86826 0.79773 0.84099 0.79043 1.20093 1.21402 1.18515 1.84682 1.01019 0.93561 1.66625 1.25206 0.98741 0.99886 1.03866 1.20474 1.01539 0.89685 1.03208 0.91049 0.91406 0.91252 0.82999 0.72898 0.88335 0.88406 0.95537 0.95807 0.92619 0.90033 0.90577 0.89931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.67 9.60 36.01 0.35 -0.33 16 2 C -0.14 -1.53 5.80 -106.25 -0.62 -2.14 16 3 C 0.01 0.14 9.64 -41.21 -0.40 -0.26 16 4 C -0.80 -10.95 6.21 29.04 0.18 -10.77 16 5 S 2.71 38.62 5.53 -107.50 -0.59 38.03 16 6 O -0.93 -16.55 16.86 -64.61 -1.09 -17.64 16 7 O -0.95 -13.67 17.79 -57.17 -1.02 -14.68 16 8 N -1.06 -13.41 5.70 31.22 0.18 -13.23 16 9 C 0.53 8.74 7.66 -10.99 -0.08 8.66 16 10 O -0.49 -9.62 13.87 -11.51 -0.16 -9.78 16 11 C -0.12 -2.12 5.64 -27.88 -0.16 -2.28 16 12 C 0.00 -0.07 3.33 -27.88 -0.09 -0.16 16 13 C -0.53 -14.41 9.66 -34.44 -0.33 -14.74 16 14 H 0.07 2.11 7.99 -52.48 -0.42 1.69 16 15 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 16 N -0.90 -27.20 13.96 55.43 0.77 -26.42 16 17 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 21 S 0.27 3.80 22.21 -107.50 -2.39 1.41 16 22 C -0.16 -1.73 6.50 -36.01 -0.23 -1.96 16 23 C -0.09 -0.70 9.74 36.00 0.35 -0.35 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.40 7.25 -51.93 -0.38 0.03 16 26 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 27 H 0.15 1.39 8.05 -52.49 -0.42 0.97 16 28 H 0.43 3.69 8.83 -34.47 -0.30 3.38 16 29 H 0.10 1.55 8.14 -51.92 -0.42 1.13 16 30 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.03 0.63 7.16 -51.93 -0.37 0.26 16 32 H 0.02 0.57 7.53 -51.93 -0.39 0.18 16 33 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.52 7.32 -51.93 -0.38 0.14 16 LS Contribution 334.67 15.07 5.04 5.04 Total: -1.00 -35.88 334.67 -9.43 -45.31 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -4.37 Total: -2.77 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: -1.14 Total: -22.41 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.95 Total: -39.65 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -2.27 Total: -42.11 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Atomic # 16 Polarization: 42.42 SS G_CDS: -2.98 Total: 39.43 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.88 -9.43 -45.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813081269.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.316 kcal (2) G-P(sol) polarization free energy of solvation -35.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds