Wall clock time and date at job start Tue Mar 31 2020 12:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47361 * 2 1 4 4 S 1.70629 * 124.52136 * 269.97577 * 3 2 1 5 5 C 1.75831 * 91.56349 * 180.02562 * 4 3 2 6 6 C 1.46580 * 125.45846 * 179.97438 * 5 4 3 7 7 O 1.21703 * 119.99923 * 180.02562 * 6 5 4 8 8 N 1.34779 * 119.99844 * 0.02562 * 6 5 4 9 9 S 1.65596 * 119.99707 * 180.02562 * 8 6 5 10 10 O 1.42104 * 104.27661 * 181.07249 * 9 8 6 11 11 O 1.42103 * 104.27830 * 308.92499 * 9 8 6 12 12 C 1.81398 * 104.45255 * 64.99851 * 9 8 6 13 13 C 1.50704 * 109.47242 * 179.97438 * 12 9 8 14 14 H 1.08004 * 119.99948 * 359.97438 * 13 12 9 15 15 C 1.37873 * 119.99949 * 180.02562 * 13 12 9 16 16 N 1.31513 * 120.00180 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00017 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47084 * 90.00304 * 17 15 13 19 19 H 1.48501 * 109.47177 * 209.99799 * 17 15 13 20 20 H 1.48491 * 109.47324 * 330.00334 * 17 15 13 21 21 C 1.36652 * 109.08297 * 359.76015 * 5 4 3 22 22 C 1.33815 * 124.52795 * 89.99711 * 3 2 1 23 23 C 1.50703 * 122.44505 * 359.95937 * 22 3 2 24 24 H 1.08997 * 109.47078 * 60.00501 * 1 2 3 25 25 H 1.09002 * 109.46720 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46669 * 300.00089 * 1 2 3 27 27 H 1.09003 * 109.47100 * 239.99621 * 2 1 3 28 28 H 1.09005 * 109.47417 * 119.99621 * 2 1 3 29 29 H 0.96996 * 119.99998 * 0.02562 * 8 6 5 30 30 H 1.09001 * 109.47318 * 300.00246 * 12 9 8 31 31 H 1.09000 * 109.46825 * 60.00326 * 12 9 8 32 32 H 0.96994 * 120.00241 * 179.97438 * 16 15 13 33 33 H 1.08000 * 123.35291 * 180.24276 * 21 5 4 34 34 H 1.09002 * 109.47152 * 89.99941 * 23 22 3 35 35 H 1.09001 * 109.46980 * 330.00042 * 23 22 3 36 36 H 1.09004 * 109.47113 * 210.00022 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 16 2.3553 2.3322 -1.4058 5 6 2.8475 3.7230 -0.4493 6 6 3.3030 5.0077 -0.9885 7 8 3.6214 5.9065 -0.2322 8 7 3.3690 5.1935 -2.3218 9 16 3.8842 6.6447 -2.9309 10 8 3.7995 6.4831 -4.3402 11 8 3.0900 7.6101 -2.2553 12 6 5.6166 6.7662 -2.4070 13 6 6.2033 8.0608 -2.9079 14 1 5.5949 8.7422 -3.4842 15 6 7.5169 8.3750 -2.6314 16 7 8.0288 9.5050 -3.0680 17 14 8.5694 7.1962 -1.6352 18 1 9.2494 6.2451 -2.5508 19 1 9.5874 7.9640 -0.8740 20 1 7.7082 6.4425 -0.6890 21 6 2.7328 3.4160 0.8774 22 6 2.2852 2.1359 1.1024 23 6 2.0877 1.5804 2.4894 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.1148 4.4773 -2.9245 30 1 5.6697 6.7399 -1.3186 31 1 6.1802 5.9290 -2.8187 32 1 8.9529 9.7261 -2.8732 33 1 2.9728 4.1091 1.6701 34 1 3.0088 1.1033 2.8242 35 1 1.2824 0.8460 2.4754 36 1 1.8291 2.3902 3.1717 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821582422.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:56 Heat of formation + Delta-G solvation = -93.206911 kcal Electronic energy + Delta-G solvation = -21857.134561 eV Core-core repulsion = 18366.870625 eV Total energy + Delta-G solvation = -3490.263936 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.05070 -38.72768 -36.39477 -35.31777 -34.34564 -34.11283 -33.26012 -30.67734 -29.82409 -27.85083 -25.38815 -23.11086 -22.84878 -21.46173 -19.60386 -18.90224 -18.29846 -17.68874 -16.78214 -16.34783 -15.95166 -15.40427 -15.01732 -14.83584 -14.67742 -14.45812 -14.17766 -13.98419 -13.49113 -12.97974 -12.72675 -12.61364 -12.57329 -12.49577 -12.10891 -12.03927 -11.68388 -11.67084 -11.53321 -11.43244 -11.33344 -11.08379 -10.86826 -10.74482 -10.41749 -10.22361 -9.88916 -9.43936 -8.95697 -8.83065 -8.67663 -6.31762 -4.41327 0.18813 0.81933 1.16120 1.59215 2.00656 2.83342 3.02170 3.16061 3.24918 3.27290 4.19631 4.23282 4.27044 4.45313 4.57313 4.80043 4.83432 4.84954 4.98700 5.03372 5.07025 5.10151 5.31784 5.34485 5.40582 5.50012 5.58264 5.64333 5.76842 6.00806 6.15454 6.17149 6.30293 6.75973 7.15811 7.52914 7.99386 8.58192 9.22829 10.79095 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.020813 B = 0.003758 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.008419 B = 7448.729116 C = 8073.262229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.055 4.055 3 C -0.191 4.191 4 S 0.205 5.795 5 C -0.273 4.273 6 C 0.611 3.389 7 O -0.477 6.477 8 N -1.060 6.060 9 S 2.578 3.422 10 O -0.956 6.956 11 O -0.940 6.940 12 C -0.458 4.458 13 C -0.533 4.533 14 H 0.088 0.912 15 C 0.091 3.909 16 N -0.879 5.879 17 Si 0.880 3.120 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.261 1.261 21 C -0.038 4.038 22 C -0.122 4.122 23 C -0.094 4.094 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.422 0.578 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.272 0.728 33 H 0.158 0.842 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.450 -23.153 8.157 27.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.094 4.094 3 C -0.311 4.311 4 S 0.475 5.525 5 C -0.394 4.394 6 C 0.397 3.603 7 O -0.349 6.349 8 N -0.819 5.819 9 S 2.678 3.322 10 O -0.947 6.947 11 O -0.930 6.930 12 C -0.593 4.593 13 C -0.572 4.572 14 H 0.106 0.894 15 C -0.116 4.116 16 N -0.514 5.514 17 Si 0.706 3.294 18 H -0.196 1.196 19 H -0.204 1.204 20 H -0.185 1.185 21 C -0.072 4.072 22 C -0.135 4.135 23 C -0.152 4.152 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.256 0.744 30 H 0.116 0.884 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.175 0.825 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.746 -22.067 6.609 26.327 hybrid contribution 1.126 -0.864 1.912 2.382 sum -11.620 -22.932 8.522 27.083 Atomic orbital electron populations 1.21801 0.93971 1.02193 1.02741 1.20156 0.96417 0.89251 1.03622 1.24106 1.07585 1.02100 0.97271 1.82939 1.59929 1.02211 1.07421 1.24447 1.17404 0.99267 0.98329 1.16784 0.75936 0.86281 0.81291 1.91037 1.45198 1.41720 1.56989 1.55521 1.74811 1.37214 1.14355 1.06394 0.79776 0.71946 0.74079 1.93549 1.88030 1.84120 1.29020 1.93557 1.67498 1.56852 1.75097 1.28102 1.15836 1.06960 1.08445 1.20020 0.98684 1.00816 1.37704 0.89433 1.24840 0.97155 0.95112 0.94449 1.69855 1.15170 1.22424 1.43950 0.86747 0.80423 0.81343 0.80891 1.19550 1.20430 1.18517 1.20723 0.95457 0.95801 0.95217 1.18674 1.04354 0.93813 0.96666 1.20526 1.02147 1.01139 0.91437 0.92265 0.91817 0.92102 0.90509 0.89627 0.74398 0.88352 0.90010 0.91765 0.82496 0.91098 0.91384 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.89 37.16 0.37 -0.42 16 2 C -0.06 -0.33 5.72 -27.89 -0.16 -0.49 16 3 C -0.19 -1.65 5.53 -35.86 -0.20 -1.85 16 4 S 0.20 1.99 22.10 -107.50 -2.38 -0.39 16 5 C -0.27 -3.61 6.45 -36.79 -0.24 -3.85 16 6 C 0.61 10.36 7.52 -12.90 -0.10 10.27 16 7 O -0.48 -9.79 14.94 -11.95 -0.18 -9.97 16 8 N -1.06 -17.39 5.60 30.24 0.17 -17.22 16 9 S 2.58 55.65 5.03 -107.50 -0.54 55.11 16 10 O -0.96 -21.69 18.08 -57.54 -1.04 -22.73 16 11 O -0.94 -23.40 17.04 -64.79 -1.10 -24.50 16 12 C -0.46 -10.83 4.71 36.01 0.17 -10.66 16 13 C -0.53 -15.29 9.68 -34.44 -0.33 -15.62 16 14 H 0.09 2.68 7.96 -52.48 -0.42 2.26 16 15 C 0.09 2.63 5.47 -17.82 -0.10 2.53 16 16 N -0.88 -26.44 13.96 55.43 0.77 -25.67 16 17 Si 0.88 21.00 27.47 -169.99 -4.67 16.33 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.26 -5.98 6.54 56.52 0.37 -5.61 16 21 C -0.04 -0.45 9.79 -40.43 -0.40 -0.85 16 22 C -0.12 -1.15 5.78 -106.45 -0.62 -1.76 16 23 C -0.09 -0.62 9.56 36.01 0.34 -0.28 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.06 0.33 7.80 -51.93 -0.41 -0.07 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.09 0.42 7.25 -51.93 -0.38 0.04 16 29 H 0.42 5.27 7.90 -34.47 -0.27 5.00 16 30 H 0.10 2.32 6.25 -51.92 -0.32 1.99 16 31 H 0.08 1.71 7.57 -51.92 -0.39 1.32 16 32 H 0.27 7.52 8.31 -40.82 -0.34 7.19 16 33 H 0.16 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.36 6.86 -51.93 -0.36 0.00 16 36 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 LS Contribution 333.72 15.07 5.03 5.03 Total: -1.00 -36.20 333.72 -9.44 -45.64 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -4.25 Total: 1.33 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -1.25 Total: -22.97 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.94 Total: -42.89 kcal Atomic # 8 Polarization: -54.88 SS G_CDS: -2.32 Total: -57.20 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Atomic # 16 Polarization: 57.64 SS G_CDS: -2.92 Total: 54.72 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -36.20 -9.44 -45.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821582422.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.565 kcal (2) G-P(sol) polarization free energy of solvation -36.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds