Wall clock time and date at job start Tue Mar 31 2020 12:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47361 * 2 1 4 4 S 1.70629 * 124.52136 * 269.97577 * 3 2 1 5 5 C 1.75831 * 91.56349 * 180.02562 * 4 3 2 6 6 C 1.46580 * 125.45846 * 179.97438 * 5 4 3 7 7 O 1.21703 * 119.99923 * 180.02562 * 6 5 4 8 8 N 1.34779 * 119.99844 * 0.02562 * 6 5 4 9 9 S 1.65596 * 119.99707 * 180.02562 * 8 6 5 10 10 O 1.42104 * 104.27661 * 181.07249 * 9 8 6 11 11 O 1.42103 * 104.27830 * 308.92499 * 9 8 6 12 12 C 1.81398 * 104.45255 * 64.99851 * 9 8 6 13 13 C 1.50704 * 109.47242 * 179.97438 * 12 9 8 14 14 H 1.08004 * 119.99948 * 359.97438 * 13 12 9 15 15 C 1.37873 * 119.99949 * 180.02562 * 13 12 9 16 16 N 1.31513 * 120.00180 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00017 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47084 * 90.00304 * 17 15 13 19 19 H 1.48501 * 109.47177 * 209.99799 * 17 15 13 20 20 H 1.48491 * 109.47324 * 330.00334 * 17 15 13 21 21 C 1.36652 * 109.08297 * 359.76015 * 5 4 3 22 22 C 1.33815 * 124.52795 * 89.99711 * 3 2 1 23 23 C 1.50703 * 122.44505 * 359.95937 * 22 3 2 24 24 H 1.08997 * 109.47078 * 60.00501 * 1 2 3 25 25 H 1.09002 * 109.46720 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46669 * 300.00089 * 1 2 3 27 27 H 1.09003 * 109.47100 * 239.99621 * 2 1 3 28 28 H 1.09005 * 109.47417 * 119.99621 * 2 1 3 29 29 H 0.96996 * 119.99998 * 0.02562 * 8 6 5 30 30 H 1.09001 * 109.47318 * 300.00246 * 12 9 8 31 31 H 1.09000 * 109.46825 * 60.00326 * 12 9 8 32 32 H 0.96994 * 120.00241 * 179.97438 * 16 15 13 33 33 H 1.08000 * 123.35291 * 180.24276 * 21 5 4 34 34 H 1.09002 * 109.47152 * 89.99941 * 23 22 3 35 35 H 1.09001 * 109.46980 * 330.00042 * 23 22 3 36 36 H 1.09004 * 109.47113 * 210.00022 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 16 2.3553 2.3322 -1.4058 5 6 2.8475 3.7230 -0.4493 6 6 3.3030 5.0077 -0.9885 7 8 3.6214 5.9065 -0.2322 8 7 3.3690 5.1935 -2.3218 9 16 3.8842 6.6447 -2.9309 10 8 3.7995 6.4831 -4.3402 11 8 3.0900 7.6101 -2.2553 12 6 5.6166 6.7662 -2.4070 13 6 6.2033 8.0608 -2.9079 14 1 5.5949 8.7422 -3.4842 15 6 7.5169 8.3750 -2.6314 16 7 8.0288 9.5050 -3.0680 17 14 8.5694 7.1962 -1.6352 18 1 9.2494 6.2451 -2.5508 19 1 9.5874 7.9640 -0.8740 20 1 7.7082 6.4425 -0.6890 21 6 2.7328 3.4160 0.8774 22 6 2.2852 2.1359 1.1024 23 6 2.0877 1.5804 2.4894 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.1148 4.4773 -2.9245 30 1 5.6697 6.7399 -1.3186 31 1 6.1802 5.9290 -2.8187 32 1 8.9529 9.7261 -2.8732 33 1 2.9728 4.1091 1.6701 34 1 3.0088 1.1033 2.8242 35 1 1.2824 0.8460 2.4754 36 1 1.8291 2.3902 3.1717 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821582422.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:55 Heat of formation + Delta-G solvation = -120.122625 kcal Electronic energy + Delta-G solvation = -21858.301714 eV Core-core repulsion = 18366.870625 eV Total energy + Delta-G solvation = -3491.431089 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.33341 -39.55861 -38.23832 -37.18380 -35.78577 -35.38835 -34.74212 -31.89709 -31.35194 -28.48166 -26.34383 -25.16708 -23.49260 -22.56409 -21.05349 -20.05952 -19.59791 -19.22925 -18.48214 -17.71844 -17.40704 -16.69066 -16.42584 -16.37985 -16.10435 -15.41157 -15.18150 -14.77096 -14.71786 -14.42257 -14.15074 -13.85408 -13.67647 -13.45200 -13.33140 -13.23275 -13.14206 -13.03636 -12.72866 -12.68127 -12.41633 -12.24797 -12.18281 -12.10332 -11.91840 -11.67645 -11.66862 -11.34738 -10.97284 -9.77865 -9.41339 -8.49636 -6.66913 -0.95315 -0.71794 0.33810 0.80250 1.04666 1.28769 1.32902 1.43209 1.45874 1.78093 2.23668 2.60587 2.80686 3.03623 3.30308 3.66761 3.76925 4.05073 4.14087 4.30947 4.39622 4.40893 4.43920 4.50148 4.76741 4.83478 4.88221 5.01469 5.06617 5.10507 5.13565 5.29285 5.38976 5.49183 5.54766 5.76548 6.23692 6.36237 7.01722 8.65464 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.020813 B = 0.003758 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.008419 B = 7448.729116 C = 8073.262229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.058 4.058 3 C -0.173 4.173 4 S 0.239 5.761 5 C -0.316 4.316 6 C 0.611 3.389 7 O -0.522 6.522 8 N -1.043 6.043 9 S 2.609 3.391 10 O -0.970 6.970 11 O -0.978 6.978 12 C -0.469 4.469 13 C -0.557 4.557 14 H 0.046 0.954 15 C 0.031 3.969 16 N -0.927 5.927 17 Si 0.947 3.053 18 H -0.247 1.247 19 H -0.272 1.272 20 H -0.246 1.246 21 C -0.032 4.032 22 C -0.135 4.135 23 C -0.092 4.092 24 H 0.051 0.949 25 H 0.080 0.920 26 H 0.058 0.942 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.441 0.559 30 H 0.102 0.898 31 H 0.115 0.885 32 H 0.279 0.721 33 H 0.152 0.848 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.780 -27.520 9.403 31.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.097 4.097 3 C -0.293 4.293 4 S 0.509 5.491 5 C -0.438 4.438 6 C 0.400 3.600 7 O -0.398 6.398 8 N -0.807 5.807 9 S 2.708 3.292 10 O -0.960 6.960 11 O -0.968 6.968 12 C -0.604 4.604 13 C -0.596 4.596 14 H 0.065 0.935 15 C -0.172 4.172 16 N -0.564 5.564 17 Si 0.767 3.233 18 H -0.170 1.170 19 H -0.197 1.197 20 H -0.169 1.169 21 C -0.067 4.067 22 C -0.147 4.147 23 C -0.151 4.151 24 H 0.070 0.930 25 H 0.099 0.901 26 H 0.077 0.923 27 H 0.107 0.893 28 H 0.122 0.878 29 H 0.279 0.721 30 H 0.120 0.880 31 H 0.133 0.867 32 H 0.088 0.912 33 H 0.170 0.830 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.088 -26.452 7.811 30.530 hybrid contribution 1.087 0.391 1.514 1.905 sum -12.001 -26.061 9.325 30.169 Atomic orbital electron populations 1.21813 0.93291 1.03257 1.02335 1.20354 0.96830 0.87316 1.05163 1.24624 1.05064 1.03130 0.96516 1.82783 1.58963 1.00220 1.07090 1.24152 1.20919 0.99096 0.99623 1.17295 0.74874 0.87226 0.80609 1.91006 1.47528 1.43559 1.57700 1.54931 1.74470 1.36357 1.14970 1.05152 0.78523 0.72259 0.73265 1.93521 1.87894 1.84762 1.29866 1.93506 1.68071 1.59395 1.75849 1.28132 1.18026 1.05568 1.08693 1.20261 0.99048 1.02479 1.37789 0.93548 1.25928 0.98626 0.97093 0.95530 1.69988 1.16065 1.24696 1.45615 0.85708 0.78578 0.79295 0.79720 1.17049 1.19728 1.16896 1.20940 0.94364 0.96802 0.94633 1.18872 1.04575 0.92891 0.98366 1.20596 1.03274 1.01567 0.89660 0.92954 0.90087 0.92298 0.89263 0.87837 0.72099 0.87973 0.86687 0.91194 0.83019 0.90156 0.89641 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 71.98 0.71 -0.31 16 2 C -0.06 -0.44 5.72 29.85 0.17 -0.27 16 3 C -0.17 -2.42 5.53 24.68 0.14 -2.29 16 4 S 0.24 4.04 22.10 -56.49 -1.25 2.79 16 5 C -0.32 -8.03 6.45 24.08 0.16 -7.88 16 6 C 0.61 20.60 7.52 86.42 0.65 21.25 16 7 O -0.52 -21.86 14.94 12.02 0.18 -21.68 16 8 N -1.04 -33.70 5.60 -176.45 -0.99 -34.69 16 9 S 2.61 114.33 5.03 -56.49 -0.28 114.04 16 10 O -0.97 -44.28 18.08 -127.65 -2.31 -46.59 16 11 O -0.98 -50.38 17.04 -120.72 -2.06 -52.44 16 12 C -0.47 -22.28 4.71 71.24 0.34 -21.95 16 13 C -0.56 -32.97 9.68 25.60 0.25 -32.73 16 14 H 0.05 3.02 7.96 -2.91 -0.02 3.00 16 15 C 0.03 1.79 5.47 84.65 0.46 2.25 16 16 N -0.93 -57.47 13.96 21.45 0.30 -57.17 16 17 Si 0.95 42.67 27.47 68.60 1.88 44.55 16 18 H -0.25 -10.15 7.11 99.48 0.71 -9.45 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.25 -10.38 6.54 99.48 0.65 -9.73 16 21 C -0.03 -0.72 9.79 21.72 0.21 -0.51 16 22 C -0.14 -2.18 5.78 -21.05 -0.12 -2.30 16 23 C -0.09 -0.93 9.56 71.24 0.68 -0.25 16 24 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 26 H 0.06 0.44 7.80 -2.39 -0.02 0.42 16 27 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.10 0.51 7.25 -2.38 -0.02 0.49 16 29 H 0.44 10.45 7.90 -96.75 -0.76 9.68 16 30 H 0.10 4.80 6.25 -2.39 -0.01 4.79 16 31 H 0.12 4.64 7.57 -2.39 -0.02 4.62 16 32 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 33 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 34 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.08 0.57 6.86 -2.39 -0.02 0.55 16 36 H 0.07 0.72 8.13 -2.38 -0.02 0.70 16 Total: -1.00 -81.44 333.72 -0.58 -82.02 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.30 Total: 14.15 kcal Atomic # 6 Polarization: -48.61 SS G_CDS: 3.64 Total: -44.97 kcal Atomic # 7 Polarization: -91.17 SS G_CDS: -0.69 Total: -91.86 kcal Atomic # 8 Polarization: -116.53 SS G_CDS: -4.18 Total: -120.71 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.88 Total: 44.55 kcal Atomic # 16 Polarization: 118.36 SS G_CDS: -1.53 Total: 116.83 kcal Total: -81.44 -0.58 -82.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821582422.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.108 kcal (2) G-P(sol) polarization free energy of solvation -81.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds