Wall clock time and date at job start Tue Mar 31 2020 12:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86793 * 120.00665 * 2 1 4 4 H 1.48501 * 109.47581 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46806 * 299.99833 * 3 2 1 6 6 H 1.48500 * 109.47396 * 59.99108 * 3 2 1 7 7 C 1.37884 * 119.99606 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99660 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00168 * 0.02562 * 7 2 1 10 10 S 1.81399 * 109.47322 * 179.97438 * 9 7 2 11 11 O 1.42096 * 110.54354 * 68.37588 * 10 9 7 12 12 O 1.42102 * 110.54203 * 291.62477 * 10 9 7 13 13 N 1.65603 * 104.45054 * 179.97438 * 10 9 7 14 14 C 1.34780 * 119.99527 * 65.00061 * 13 10 9 15 15 O 1.21281 * 120.00434 * 359.97438 * 14 13 10 16 16 C 1.50703 * 119.99575 * 180.02562 * 14 13 10 17 17 C 1.52996 * 109.47094 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47210 * 179.97438 * 17 16 14 19 19 C 1.50706 * 109.47116 * 179.97438 * 18 17 16 20 20 C 1.33391 * 125.19937 * 90.00083 * 19 18 17 21 21 C 1.38423 * 114.92045 * 179.97438 * 20 19 18 22 22 C 1.33390 * 114.91979 * 359.97438 * 21 20 19 23 23 S 1.75878 * 125.20693 * 269.69344 * 19 18 17 24 24 H 0.97002 * 119.99345 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46972 * 59.99521 * 9 7 2 26 26 H 1.09003 * 109.47298 * 299.99902 * 9 7 2 27 27 H 0.96992 * 119.99785 * 244.99994 * 13 10 9 28 28 H 1.08997 * 109.47561 * 59.99923 * 16 14 13 29 29 H 1.09000 * 109.46976 * 299.99617 * 16 14 13 30 30 H 1.09000 * 109.47531 * 59.99538 * 17 16 14 31 31 H 1.09008 * 109.47250 * 300.00113 * 17 16 14 32 32 H 1.09000 * 109.46884 * 60.00289 * 18 17 16 33 33 H 1.09000 * 109.46955 * 299.99604 * 18 17 16 34 34 H 1.07995 * 122.54106 * 359.95411 * 20 19 18 35 35 H 1.08001 * 122.53959 * 180.02562 * 21 20 19 36 36 H 1.07998 * 125.20163 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 16 2.4296 -3.8781 0.0005 11 8 3.1263 -3.9385 1.2375 12 8 3.1263 -3.9384 -1.2365 13 7 1.4791 -5.2342 0.0013 14 6 0.6881 -5.5032 -1.0563 15 8 0.6720 -4.7518 -2.0083 16 6 -0.1773 -6.7370 -1.0554 17 6 -0.9690 -6.8055 -2.3628 18 6 -1.8471 -8.0584 -2.3622 19 6 -2.6275 -8.1256 -3.6497 20 6 -2.2168 -8.7269 -4.7673 21 6 -3.1056 -8.6596 -5.8264 22 6 -4.2383 -8.0040 -5.5687 23 16 -4.2222 -7.4297 -3.9063 24 1 -0.4849 0.8401 -0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6239 -2.5568 0.8903 27 1 1.4918 -5.8348 0.7627 28 1 -0.8683 -6.6956 -0.2135 29 1 0.4523 -7.6222 -0.9656 30 1 -0.2778 -6.8471 -3.2045 31 1 -1.5986 -5.9202 -2.4532 32 1 -2.5385 -8.0171 -1.5205 33 1 -1.2173 -8.9434 -2.2721 34 1 -1.2630 -9.2281 -4.8404 35 1 -2.8980 -9.1049 -6.7882 36 1 -5.0438 -7.8525 -6.2720 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821583772.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:40 Heat of formation + Delta-G solvation = -98.303182 kcal Electronic energy + Delta-G solvation = -21322.642271 eV Core-core repulsion = 17832.157344 eV Total energy + Delta-G solvation = -3490.484927 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.85406 -38.17228 -36.25113 -35.17773 -34.92978 -34.09753 -33.35152 -30.66050 -29.05476 -27.07817 -24.06667 -23.52268 -22.27038 -20.77875 -19.44385 -19.16548 -17.80071 -17.26477 -16.88711 -16.47024 -16.06854 -15.68355 -15.36133 -14.71371 -14.37152 -14.29819 -14.11177 -13.80197 -13.07989 -12.88315 -12.67165 -12.56288 -12.22890 -12.11624 -11.84677 -11.77460 -11.55785 -11.45318 -11.29315 -11.19357 -11.00027 -10.93264 -10.76582 -10.65019 -10.47076 -9.97773 -9.76652 -9.16590 -8.81815 -8.71484 -8.64358 -6.33308 -4.44189 0.81410 1.04904 1.46037 1.83258 2.41031 2.56347 3.19637 3.20986 3.28324 3.34771 4.21300 4.34234 4.45112 4.61292 4.76745 4.87316 4.96490 4.98530 5.11774 5.13882 5.22944 5.30758 5.38554 5.39682 5.47842 5.55715 5.84738 6.01181 6.11303 6.19038 6.31528 6.58394 6.76325 7.01410 7.42374 7.73107 7.80143 8.57166 9.23177 10.78575 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.017217 B = 0.002900 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.867518 B = 9651.601641 C =10717.464405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.534 4.534 8 H 0.071 0.929 9 C -0.404 4.404 10 S 2.554 3.446 11 O -0.971 6.971 12 O -0.954 6.954 13 N -1.062 6.062 14 C 0.530 3.470 15 O -0.486 6.486 16 C -0.142 4.142 17 C -0.107 4.107 18 C -0.050 4.050 19 C -0.167 4.167 20 C -0.144 4.144 21 C -0.133 4.133 22 C -0.220 4.220 23 S 0.098 5.902 24 H 0.268 0.732 25 H 0.098 0.902 26 H 0.085 0.915 27 H 0.424 0.576 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.113 -19.359 -4.543 21.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.130 4.130 3 Si 0.733 3.267 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.574 4.574 8 H 0.089 0.911 9 C -0.541 4.541 10 S 2.656 3.344 11 O -0.961 6.961 12 O -0.944 6.944 13 N -0.822 5.822 14 C 0.315 3.685 15 O -0.357 6.357 16 C -0.184 4.184 17 C -0.145 4.145 18 C -0.089 4.089 19 C -0.285 4.285 20 C -0.174 4.174 21 C -0.164 4.164 22 C -0.355 4.355 23 S 0.362 5.638 24 H 0.078 0.922 25 H 0.116 0.884 26 H 0.103 0.897 27 H 0.258 0.742 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -9.354 -17.961 -4.399 20.723 hybrid contribution 0.668 -0.103 -0.504 0.843 sum -8.686 -18.064 -4.903 20.635 Atomic orbital electron populations 1.69965 1.06268 1.27637 1.47402 1.24927 0.95043 0.99610 0.93405 0.86276 0.80353 0.81999 0.78063 1.18970 1.20265 1.20328 1.20330 0.92774 0.88483 1.55783 0.91095 1.27604 1.09900 1.09283 1.07340 1.07081 0.77261 0.76009 0.74010 1.93516 1.71264 1.86019 1.45343 1.93528 1.70859 1.85263 1.44750 1.55500 1.56301 1.43799 1.26598 1.20587 0.78973 0.87839 0.81065 1.90922 1.63504 1.48750 1.32540 1.21803 0.99163 0.96349 1.01054 1.21452 0.98545 0.97772 0.96765 1.20200 0.97205 0.99278 0.92214 1.24516 0.98619 1.04934 1.00387 1.20135 1.01533 1.03426 0.92295 1.20172 0.93933 1.01858 1.00419 1.25604 1.03372 1.06871 0.99692 1.84389 1.15306 1.56191 1.07944 0.92209 0.88388 0.89748 0.74188 0.87889 0.88096 0.90321 0.90317 0.90481 0.89743 0.84316 0.84449 0.82080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.12 13.29 55.43 0.74 -24.39 16 2 C 0.08 2.15 5.46 -17.82 -0.10 2.05 16 3 Si 0.91 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.53 -15.02 9.13 -34.44 -0.31 -15.33 16 8 H 0.07 1.95 7.71 -52.49 -0.40 1.55 16 9 C -0.40 -10.03 5.64 36.00 0.20 -9.83 16 10 S 2.55 54.76 5.03 -107.50 -0.54 54.22 16 11 O -0.97 -22.00 18.08 -57.54 -1.04 -23.04 16 12 O -0.95 -23.69 17.04 -64.78 -1.10 -24.80 16 13 N -1.06 -16.17 5.60 31.22 0.17 -15.99 16 14 C 0.53 8.14 7.57 -10.98 -0.08 8.06 16 15 O -0.49 -9.83 14.09 -11.55 -0.16 -9.99 16 16 C -0.14 -1.35 5.70 -27.88 -0.16 -1.51 16 17 C -0.11 -1.11 4.49 -26.73 -0.12 -1.23 16 18 C -0.05 -0.40 5.71 -27.88 -0.16 -0.56 16 19 C -0.17 -1.61 5.76 -36.00 -0.21 -1.81 16 20 C -0.14 -1.34 10.05 -41.21 -0.41 -1.75 16 21 C -0.13 -1.18 10.18 -41.21 -0.42 -1.60 16 22 C -0.22 -1.95 11.23 29.04 0.33 -1.62 16 23 S 0.10 0.95 23.33 -107.50 -2.51 -1.56 16 24 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.10 2.55 7.19 -51.92 -0.37 2.18 16 26 H 0.08 2.01 8.14 -51.92 -0.42 1.59 16 27 H 0.42 4.47 8.79 -34.47 -0.30 4.17 16 28 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 31 H 0.08 0.96 8.10 -51.92 -0.42 0.54 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 35 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 341.30 15.07 5.14 5.14 Total: -1.00 -36.77 341.30 -10.21 -46.98 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -4.44 Total: 2.34 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: -1.44 Total: -25.14 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.91 Total: -40.38 kcal Atomic # 8 Polarization: -55.52 SS G_CDS: -2.31 Total: -57.83 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 55.71 SS G_CDS: -3.05 Total: 52.66 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -36.77 -10.21 -46.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821583772.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.326 kcal (2) G-P(sol) polarization free energy of solvation -36.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds