Wall clock time and date at job start Tue Mar 31 2020 12:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86793 * 120.00665 * 2 1 4 4 H 1.48501 * 109.47581 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46806 * 299.99833 * 3 2 1 6 6 H 1.48500 * 109.47396 * 59.99108 * 3 2 1 7 7 C 1.37884 * 119.99606 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99660 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00168 * 0.02562 * 7 2 1 10 10 S 1.81399 * 109.47322 * 179.97438 * 9 7 2 11 11 O 1.42096 * 110.54354 * 68.37588 * 10 9 7 12 12 O 1.42102 * 110.54203 * 291.62477 * 10 9 7 13 13 N 1.65603 * 104.45054 * 179.97438 * 10 9 7 14 14 C 1.34780 * 119.99527 * 65.00061 * 13 10 9 15 15 O 1.21281 * 120.00434 * 359.97438 * 14 13 10 16 16 C 1.50703 * 119.99575 * 180.02562 * 14 13 10 17 17 C 1.52996 * 109.47094 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47210 * 179.97438 * 17 16 14 19 19 C 1.50706 * 109.47116 * 179.97438 * 18 17 16 20 20 C 1.33391 * 125.19937 * 90.00083 * 19 18 17 21 21 C 1.38423 * 114.92045 * 179.97438 * 20 19 18 22 22 C 1.33390 * 114.91979 * 359.97438 * 21 20 19 23 23 S 1.75878 * 125.20693 * 269.69344 * 19 18 17 24 24 H 0.97002 * 119.99345 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46972 * 59.99521 * 9 7 2 26 26 H 1.09003 * 109.47298 * 299.99902 * 9 7 2 27 27 H 0.96992 * 119.99785 * 244.99994 * 13 10 9 28 28 H 1.08997 * 109.47561 * 59.99923 * 16 14 13 29 29 H 1.09000 * 109.46976 * 299.99617 * 16 14 13 30 30 H 1.09000 * 109.47531 * 59.99538 * 17 16 14 31 31 H 1.09008 * 109.47250 * 300.00113 * 17 16 14 32 32 H 1.09000 * 109.46884 * 60.00289 * 18 17 16 33 33 H 1.09000 * 109.46955 * 299.99604 * 18 17 16 34 34 H 1.07995 * 122.54106 * 359.95411 * 20 19 18 35 35 H 1.08001 * 122.53959 * 180.02562 * 21 20 19 36 36 H 1.07998 * 125.20163 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 16 2.4296 -3.8781 0.0005 11 8 3.1263 -3.9385 1.2375 12 8 3.1263 -3.9384 -1.2365 13 7 1.4791 -5.2342 0.0013 14 6 0.6881 -5.5032 -1.0563 15 8 0.6720 -4.7518 -2.0083 16 6 -0.1773 -6.7370 -1.0554 17 6 -0.9690 -6.8055 -2.3628 18 6 -1.8471 -8.0584 -2.3622 19 6 -2.6275 -8.1256 -3.6497 20 6 -2.2168 -8.7269 -4.7673 21 6 -3.1056 -8.6596 -5.8264 22 6 -4.2383 -8.0040 -5.5687 23 16 -4.2222 -7.4297 -3.9063 24 1 -0.4849 0.8401 -0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6239 -2.5568 0.8903 27 1 1.4918 -5.8348 0.7627 28 1 -0.8683 -6.6956 -0.2135 29 1 0.4523 -7.6222 -0.9656 30 1 -0.2778 -6.8471 -3.2045 31 1 -1.5986 -5.9202 -2.4532 32 1 -2.5385 -8.0171 -1.5205 33 1 -1.2173 -8.9434 -2.2721 34 1 -1.2630 -9.2281 -4.8404 35 1 -2.8980 -9.1049 -6.7882 36 1 -5.0438 -7.8525 -6.2720 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821583772.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:39 Heat of formation + Delta-G solvation = -125.040030 kcal Electronic energy + Delta-G solvation = -21323.801668 eV Core-core repulsion = 17832.157344 eV Total energy + Delta-G solvation = -3491.644324 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.15561 -38.85204 -38.08598 -37.03641 -35.72830 -35.55375 -35.40484 -31.43863 -31.09299 -27.85083 -25.64546 -24.84536 -23.15307 -21.81756 -20.74448 -20.11181 -19.29998 -18.74934 -18.29543 -17.79213 -17.54996 -16.85425 -16.51163 -16.29497 -16.11671 -15.54924 -15.24779 -14.58234 -14.50398 -14.13148 -13.78848 -13.69080 -13.60938 -13.48411 -13.32534 -13.19189 -13.08262 -12.77840 -12.72614 -12.58313 -12.47967 -12.33365 -12.00516 -11.82109 -11.71565 -11.46267 -11.28665 -11.03061 -10.80989 -9.50888 -9.37059 -8.44344 -6.63186 -0.70973 0.12854 0.77700 1.14708 1.16779 1.35966 1.37138 1.51487 1.67801 1.89293 2.28876 2.78195 2.90085 3.22146 3.47473 3.71318 4.05880 4.08696 4.22747 4.29795 4.47623 4.59953 4.65744 4.73099 4.74162 4.76095 4.77425 4.95014 5.11868 5.28067 5.31683 5.40068 5.44268 5.66037 5.67368 5.83482 6.46602 6.59835 7.08571 8.68838 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.017217 B = 0.002900 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.867518 B = 9651.601641 C =10717.464405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.262 1.262 7 C -0.568 4.568 8 H 0.067 0.933 9 C -0.423 4.423 10 S 2.600 3.400 11 O -0.981 6.981 12 O -0.988 6.988 13 N -1.042 6.042 14 C 0.523 3.477 15 O -0.540 6.540 16 C -0.129 4.129 17 C -0.106 4.106 18 C -0.042 4.042 19 C -0.179 4.179 20 C -0.153 4.153 21 C -0.143 4.143 22 C -0.225 4.225 23 S 0.065 5.935 24 H 0.274 0.726 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.449 0.551 28 H 0.140 0.860 29 H 0.145 0.855 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.958 -21.099 -3.868 23.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.790 3.210 4 H -0.185 1.185 5 H -0.194 1.194 6 H -0.187 1.187 7 C -0.607 4.607 8 H 0.085 0.915 9 C -0.558 4.558 10 S 2.700 3.300 11 O -0.972 6.972 12 O -0.979 6.979 13 N -0.809 5.809 14 C 0.312 3.688 15 O -0.414 6.414 16 C -0.170 4.170 17 C -0.145 4.145 18 C -0.081 4.081 19 C -0.296 4.296 20 C -0.183 4.183 21 C -0.173 4.173 22 C -0.360 4.360 23 S 0.328 5.672 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.104 0.896 27 H 0.289 0.711 28 H 0.158 0.842 29 H 0.162 0.838 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.129 0.871 34 H 0.172 0.828 35 H 0.174 0.826 36 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -9.206 -19.707 -3.685 22.062 hybrid contribution 0.568 0.330 -0.758 1.003 sum -8.639 -19.377 -4.442 21.675 Atomic orbital electron populations 1.70044 1.07615 1.28880 1.47887 1.25885 0.96016 1.03300 0.92745 0.85351 0.79120 0.77679 0.78840 1.18544 1.19438 1.18699 1.20766 0.93084 0.90520 1.56300 0.91495 1.27673 1.10810 1.10989 1.06289 1.05345 0.76122 0.75727 0.72812 1.93493 1.71591 1.86444 1.45648 1.93483 1.71802 1.86011 1.46557 1.54921 1.55612 1.42303 1.28031 1.21823 0.78439 0.88911 0.79649 1.90914 1.65003 1.50900 1.34591 1.21961 0.99068 0.94238 1.01759 1.21399 0.98248 0.98056 0.96771 1.20213 0.97199 0.98759 0.91960 1.24793 0.98428 1.05011 1.01377 1.20447 1.02197 1.03347 0.92300 1.20492 0.93798 1.01762 1.01271 1.25883 1.04116 1.06655 0.99322 1.84464 1.16400 1.57009 1.09301 0.91669 0.90534 0.89566 0.71108 0.84192 0.83765 0.92146 0.93086 0.88997 0.87086 0.82824 0.82553 0.80371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.98 13.29 21.45 0.28 -52.70 16 2 C 0.02 1.35 5.46 84.66 0.46 1.81 16 3 Si 0.97 43.63 29.54 68.60 2.03 45.65 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 6 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 7 C -0.57 -32.70 9.13 25.60 0.23 -32.46 16 8 H 0.07 3.77 7.71 -2.91 -0.02 3.75 16 9 C -0.42 -21.62 5.64 71.23 0.40 -21.22 16 10 S 2.60 111.33 5.03 -56.49 -0.28 111.05 16 11 O -0.98 -43.60 18.08 -127.65 -2.31 -45.91 16 12 O -0.99 -49.61 17.04 -120.73 -2.06 -51.67 16 13 N -1.04 -29.95 5.60 -173.53 -0.97 -30.92 16 14 C 0.52 15.40 7.57 87.66 0.66 16.06 16 15 O -0.54 -22.26 14.09 13.32 0.19 -22.07 16 16 C -0.13 -2.02 5.70 29.85 0.17 -1.85 16 17 C -0.11 -2.05 4.49 30.59 0.14 -1.91 16 18 C -0.04 -0.56 5.71 29.85 0.17 -0.39 16 19 C -0.18 -3.21 5.76 24.59 0.14 -3.07 16 20 C -0.15 -2.62 10.05 21.22 0.21 -2.41 16 21 C -0.14 -2.35 10.18 21.22 0.22 -2.14 16 22 C -0.22 -3.81 11.23 66.72 0.75 -3.06 16 23 S 0.07 1.24 23.33 -56.49 -1.32 -0.07 16 24 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 25 H 0.08 4.19 7.19 -2.39 -0.02 4.18 16 26 H 0.09 4.24 8.14 -2.39 -0.02 4.22 16 27 H 0.45 8.03 8.79 -96.76 -0.85 7.18 16 28 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 31 H 0.05 1.26 8.10 -2.38 -0.02 1.24 16 32 H 0.09 0.97 8.14 -2.39 -0.02 0.96 16 33 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 35 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 36 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -82.60 341.30 -0.63 -83.23 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.25 Total: 14.04 kcal Atomic # 6 Polarization: -54.19 SS G_CDS: 3.56 Total: -50.63 kcal Atomic # 7 Polarization: -82.93 SS G_CDS: -0.69 Total: -83.62 kcal Atomic # 8 Polarization: -115.47 SS G_CDS: -4.18 Total: -119.64 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: 112.57 SS G_CDS: -1.60 Total: 110.97 kcal Total: -82.60 -0.63 -83.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821583772.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.811 kcal (2) G-P(sol) polarization free energy of solvation -82.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds