Wall clock time and date at job start Tue Mar 31 2020 11:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47340 * 2 1 4 4 C 1.50702 * 109.47173 * 239.99967 * 2 1 3 5 5 H 1.08001 * 119.99877 * 274.99563 * 4 2 1 6 6 C 1.37880 * 119.99900 * 95.00467 * 4 2 1 7 7 N 1.31513 * 119.99513 * 184.91438 * 6 4 2 8 8 Si 1.86800 * 120.00053 * 4.91471 * 6 4 2 9 9 H 1.48495 * 109.47074 * 84.83319 * 8 6 4 10 10 H 1.48501 * 109.46784 * 204.83274 * 8 6 4 11 11 H 1.48501 * 109.46973 * 324.83125 * 8 6 4 12 12 N 1.46503 * 109.47179 * 119.99682 * 2 1 3 13 13 C 1.34770 * 120.00138 * 275.00312 * 12 2 1 14 14 O 1.21279 * 120.00126 * 359.97438 * 13 12 2 15 15 C 1.50707 * 119.99851 * 179.97438 * 13 12 2 16 16 H 1.08996 * 109.47195 * 54.99956 * 15 13 12 17 17 O 1.42896 * 109.46814 * 175.00150 * 15 13 12 18 18 C 1.50698 * 109.47080 * 294.99934 * 15 13 12 19 19 C 1.38263 * 119.98362 * 99.99892 * 18 15 13 20 20 C 1.38196 * 120.04363 * 179.97438 * 19 18 15 21 21 C 1.38350 * 119.99938 * 0.02562 * 20 19 18 22 22 Cl 1.73602 * 120.02192 * 180.02562 * 21 20 19 23 23 C 1.38447 * 119.95826 * 359.97438 * 21 20 19 24 24 Cl 1.73599 * 120.01574 * 180.02562 * 23 21 20 25 25 C 1.38210 * 119.98267 * 279.98288 * 18 15 13 26 26 H 1.08998 * 109.47372 * 295.03748 * 1 2 3 27 27 H 1.08997 * 109.46953 * 55.03869 * 1 2 3 28 28 H 1.08999 * 109.46680 * 175.03420 * 1 2 3 29 29 H 0.97006 * 119.99485 * 180.02562 * 7 6 4 30 30 H 0.97006 * 119.99707 * 94.99958 * 12 2 1 31 31 H 0.96704 * 114.00510 * 59.99940 * 17 15 13 32 32 H 1.08007 * 119.97568 * 0.25800 * 19 18 15 33 33 H 1.08000 * 120.00298 * 179.97438 * 20 19 18 34 34 H 1.08005 * 119.99540 * 0.04010 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1356 -1.7855 -1.2290 6 6 2.3604 0.0121 -2.3580 7 7 2.7061 -0.6132 -3.4621 8 14 2.3137 1.8791 -2.3174 9 1 3.5992 2.3948 -1.7821 10 1 2.1060 2.3991 -3.6928 11 1 1.1987 2.3275 -1.4450 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8590 1.1586 2.4115 15 6 2.6489 -0.7288 3.5878 16 1 3.6089 -1.1971 3.3709 17 8 2.8077 0.2134 4.6503 18 6 1.6558 -1.7855 3.9977 19 6 1.8781 -3.1090 3.6650 20 6 0.9685 -4.0791 4.0408 21 6 -0.1658 -3.7262 4.7499 22 17 -1.3086 -4.9445 5.2229 23 6 -0.3885 -2.4010 5.0831 24 17 -1.8110 -1.9567 5.9734 25 6 0.5233 -1.4313 4.7064 26 1 -0.3634 0.4349 0.9311 27 1 -0.3633 0.5889 -0.8422 28 1 -0.3633 -1.0238 -0.0890 29 1 2.9372 -0.1048 -4.2553 30 1 2.2491 -1.6318 1.1527 31 1 1.9913 0.6694 4.8970 32 1 2.7657 -3.3853 3.1151 33 1 1.1426 -5.1126 3.7802 34 1 0.3500 -0.3972 4.9656 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822868291.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:19 Heat of formation + Delta-G solvation = -83.212796 kcal Electronic energy + Delta-G solvation = -21824.412714 eV Core-core repulsion = 18194.661648 eV Total energy + Delta-G solvation = -3629.751066 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.47241 -38.97350 -37.04268 -36.78883 -36.27885 -34.87844 -32.60699 -31.71688 -31.26670 -29.86189 -26.84316 -25.37245 -23.33002 -22.57566 -21.10556 -19.77308 -18.31673 -18.00220 -16.68934 -16.61300 -16.33895 -15.60246 -15.27089 -14.55703 -14.47127 -14.27422 -14.06908 -13.69198 -13.45836 -12.85641 -12.58445 -12.47837 -12.22276 -12.14321 -12.02398 -11.62876 -11.56636 -11.36260 -11.18736 -11.17383 -10.91830 -10.84391 -10.64840 -9.94337 -9.46333 -9.29233 -9.23042 -8.81472 -8.73191 -8.25289 -6.30195 -4.34623 0.57216 0.76575 1.55484 1.91485 2.90619 3.09989 3.21916 3.29866 3.36437 3.69772 4.25058 4.26551 4.27453 4.34717 4.71762 4.79184 4.91381 5.02248 5.17454 5.28116 5.40562 5.55919 5.68603 5.98652 6.20437 6.25124 6.42864 6.59461 6.82942 7.07519 7.25105 7.35446 7.43175 8.00182 8.42267 8.66902 8.75827 9.31250 10.81288 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.017725 B = 0.003760 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.314286 B = 7444.091015 C = 7905.122758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.230 3.770 3 H 0.051 0.949 4 C -0.532 4.532 5 H 0.079 0.921 6 C 0.083 3.917 7 N -0.886 5.886 8 Si 0.874 3.126 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.261 1.261 12 N -0.693 5.693 13 C 0.476 3.524 14 O -0.546 6.546 15 C 0.131 3.869 16 H 0.136 0.864 17 O -0.530 6.530 18 C -0.094 4.094 19 C -0.088 4.088 20 C -0.093 4.093 21 C -0.030 4.030 22 Cl -0.050 7.050 23 C -0.026 4.026 24 Cl -0.048 7.048 25 C -0.085 4.085 26 H 0.028 0.972 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.269 0.731 30 H 0.393 0.607 31 H 0.381 0.619 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.320 -7.439 17.932 19.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.128 3.872 3 H 0.069 0.931 4 C -0.570 4.570 5 H 0.097 0.903 6 C -0.122 4.122 7 N -0.522 5.522 8 Si 0.700 3.300 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.185 1.185 12 N -0.342 5.342 13 C 0.260 3.740 14 O -0.425 6.425 15 C 0.067 3.933 16 H 0.153 0.847 17 O -0.335 6.335 18 C -0.095 4.095 19 C -0.106 4.106 20 C -0.111 4.111 21 C -0.057 4.057 22 Cl -0.021 7.021 23 C -0.053 4.053 24 Cl -0.019 7.019 25 C -0.104 4.104 26 H 0.047 0.953 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.227 0.773 31 H 0.231 0.769 32 H 0.164 0.836 33 H 0.165 0.835 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.098 -6.830 17.833 19.531 hybrid contribution -0.724 0.541 -0.111 0.911 sum -4.822 -6.289 17.722 19.413 Atomic orbital electron populations 1.22205 0.98424 1.00646 0.99251 1.19184 0.90997 0.94384 0.82656 0.93099 1.20973 1.45519 0.95606 0.94895 0.90271 1.24934 0.93510 0.98638 0.95137 1.69877 1.44403 1.36258 1.01700 0.86904 0.79825 0.85800 0.77461 1.19776 1.21097 1.18527 1.46683 1.63943 1.13802 1.09801 1.21096 0.79377 0.88046 0.85509 1.90683 1.51190 1.15682 1.84926 1.20839 0.98533 0.87219 0.86674 0.84668 1.86611 1.38454 1.56729 1.51705 1.20391 0.95736 0.95310 0.98081 1.21130 0.99739 0.91222 0.98548 1.21049 0.91925 1.01134 0.97024 1.20814 0.94055 0.88629 1.02233 1.98392 1.59298 1.53866 1.90580 1.20652 0.91687 0.92477 1.00518 1.98395 1.37419 1.92817 1.73291 1.20752 0.92424 0.99376 0.97871 0.95339 0.92806 0.93375 0.92149 0.77328 0.76940 0.83556 0.83504 0.84037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.47 37.16 0.35 -2.76 16 2 C 0.23 5.24 2.22 -69.08 -0.15 5.08 16 3 H 0.05 1.28 4.73 -51.93 -0.25 1.03 16 4 C -0.53 -13.73 9.05 -34.44 -0.31 -14.04 16 5 H 0.08 2.14 8.06 -52.49 -0.42 1.72 16 6 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 7 N -0.89 -25.41 13.96 55.43 0.77 -24.63 16 8 Si 0.87 21.08 26.99 -169.99 -4.59 16.49 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.26 -6.22 6.82 56.52 0.39 -5.83 16 12 N -0.69 -12.86 5.02 -54.93 -0.28 -13.13 16 13 C 0.48 8.37 7.11 -10.98 -0.08 8.29 16 14 O -0.55 -11.66 15.99 -14.30 -0.23 -11.89 16 15 C 0.13 1.67 3.62 -29.03 -0.11 1.56 16 16 H 0.14 1.45 8.00 -51.93 -0.42 1.04 16 17 O -0.53 -7.02 12.84 -55.09 -0.71 -7.73 16 18 C -0.09 -1.05 4.92 -104.62 -0.51 -1.56 16 19 C -0.09 -0.82 9.67 -39.59 -0.38 -1.21 16 20 C -0.09 -0.86 9.83 -39.56 -0.39 -1.25 16 21 C -0.03 -0.32 6.32 -39.46 -0.25 -0.57 16 22 Cl -0.05 -0.51 27.96 -51.86 -1.45 -1.96 16 23 C -0.03 -0.29 6.32 -39.47 -0.25 -0.54 16 24 Cl -0.05 -0.53 27.96 -51.86 -1.45 -1.98 16 25 C -0.09 -0.96 9.10 -39.55 -0.36 -1.32 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.39 6.27 8.59 -40.82 -0.35 5.92 16 31 H 0.38 4.27 7.25 45.56 0.33 4.60 16 32 H 0.15 1.01 8.04 -52.48 -0.42 0.59 16 33 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.14 1.46 6.78 -52.48 -0.36 1.11 16 LS Contribution 327.10 15.07 4.93 4.93 Total: -1.00 -31.22 327.10 -8.26 -39.48 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -2.72 Total: 6.58 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -2.54 Total: -6.16 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.50 Total: -37.77 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.94 Total: -19.62 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.59 Total: 16.49 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -2.90 Total: -3.94 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.22 -8.26 -39.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822868291.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.732 kcal (2) G-P(sol) polarization free energy of solvation -31.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds