Wall clock time and date at job start Tue Mar 31 2020 11:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47340 * 2 1 4 4 C 1.50702 * 109.47173 * 239.99967 * 2 1 3 5 5 H 1.08001 * 119.99877 * 274.99563 * 4 2 1 6 6 C 1.37880 * 119.99900 * 95.00467 * 4 2 1 7 7 N 1.31513 * 119.99513 * 184.91438 * 6 4 2 8 8 Si 1.86800 * 120.00053 * 4.91471 * 6 4 2 9 9 H 1.48495 * 109.47074 * 84.83319 * 8 6 4 10 10 H 1.48501 * 109.46784 * 204.83274 * 8 6 4 11 11 H 1.48501 * 109.46973 * 324.83125 * 8 6 4 12 12 N 1.46503 * 109.47179 * 119.99682 * 2 1 3 13 13 C 1.34770 * 120.00138 * 275.00312 * 12 2 1 14 14 O 1.21279 * 120.00126 * 359.97438 * 13 12 2 15 15 C 1.50707 * 119.99851 * 179.97438 * 13 12 2 16 16 H 1.08996 * 109.47195 * 54.99956 * 15 13 12 17 17 O 1.42896 * 109.46814 * 175.00150 * 15 13 12 18 18 C 1.50698 * 109.47080 * 294.99934 * 15 13 12 19 19 C 1.38263 * 119.98362 * 99.99892 * 18 15 13 20 20 C 1.38196 * 120.04363 * 179.97438 * 19 18 15 21 21 C 1.38350 * 119.99938 * 0.02562 * 20 19 18 22 22 Cl 1.73602 * 120.02192 * 180.02562 * 21 20 19 23 23 C 1.38447 * 119.95826 * 359.97438 * 21 20 19 24 24 Cl 1.73599 * 120.01574 * 180.02562 * 23 21 20 25 25 C 1.38210 * 119.98267 * 279.98288 * 18 15 13 26 26 H 1.08998 * 109.47372 * 295.03748 * 1 2 3 27 27 H 1.08997 * 109.46953 * 55.03869 * 1 2 3 28 28 H 1.08999 * 109.46680 * 175.03420 * 1 2 3 29 29 H 0.97006 * 119.99485 * 180.02562 * 7 6 4 30 30 H 0.97006 * 119.99707 * 94.99958 * 12 2 1 31 31 H 0.96704 * 114.00510 * 59.99940 * 17 15 13 32 32 H 1.08007 * 119.97568 * 0.25800 * 19 18 15 33 33 H 1.08000 * 120.00298 * 179.97438 * 20 19 18 34 34 H 1.08005 * 119.99540 * 0.04010 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1356 -1.7855 -1.2290 6 6 2.3604 0.0121 -2.3580 7 7 2.7061 -0.6132 -3.4621 8 14 2.3137 1.8791 -2.3174 9 1 3.5992 2.3948 -1.7821 10 1 2.1060 2.3991 -3.6928 11 1 1.1987 2.3275 -1.4450 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8590 1.1586 2.4115 15 6 2.6489 -0.7288 3.5878 16 1 3.6089 -1.1971 3.3709 17 8 2.8077 0.2134 4.6503 18 6 1.6558 -1.7855 3.9977 19 6 1.8781 -3.1090 3.6650 20 6 0.9685 -4.0791 4.0408 21 6 -0.1658 -3.7262 4.7499 22 17 -1.3086 -4.9445 5.2229 23 6 -0.3885 -2.4010 5.0831 24 17 -1.8110 -1.9567 5.9734 25 6 0.5233 -1.4313 4.7064 26 1 -0.3634 0.4349 0.9311 27 1 -0.3633 0.5889 -0.8422 28 1 -0.3633 -1.0238 -0.0890 29 1 2.9372 -0.1048 -4.2553 30 1 2.2491 -1.6318 1.1527 31 1 1.9913 0.6694 4.8970 32 1 2.7657 -3.3853 3.1151 33 1 1.1426 -5.1126 3.7802 34 1 0.3500 -0.3972 4.9656 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822868291.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:19 Heat of formation + Delta-G solvation = -103.892822 kcal Electronic energy + Delta-G solvation = -21825.309467 eV Core-core repulsion = 18194.661648 eV Total energy + Delta-G solvation = -3630.647819 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.53791 -40.12005 -38.04456 -37.59999 -37.30209 -36.48999 -34.44555 -32.86714 -32.04710 -31.37058 -27.93134 -27.31758 -24.12569 -23.65693 -22.52290 -21.33453 -19.71386 -19.05740 -18.21768 -17.71134 -17.38002 -16.98458 -16.40935 -15.90634 -15.70788 -15.25807 -15.06414 -15.01042 -14.74128 -14.55294 -14.22645 -13.74237 -13.33934 -13.18005 -13.00219 -12.95372 -12.84990 -12.80919 -12.61452 -12.43856 -12.20821 -11.99419 -11.88710 -11.80761 -11.24313 -10.86208 -10.67677 -10.05045 -9.87266 -9.70644 -8.38544 -6.44348 -0.24634 -0.00981 0.74887 1.11525 1.29186 1.34874 1.43861 1.59542 2.17679 2.27027 2.41605 3.02991 3.30268 3.36797 3.52348 3.85617 3.93241 4.04396 4.13262 4.38723 4.45127 4.63839 4.70564 4.76188 4.81651 4.95079 5.07145 5.18592 5.35162 5.43717 5.46586 5.69354 6.09796 6.39968 6.60969 6.83042 7.20505 7.35916 8.76061 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.017725 B = 0.003760 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.314286 B = 7444.091015 C = 7905.122758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.233 3.767 3 H 0.030 0.970 4 C -0.524 4.524 5 H 0.062 0.938 6 C 0.036 3.964 7 N -0.927 5.927 8 Si 0.922 3.078 9 H -0.274 1.274 10 H -0.279 1.279 11 H -0.258 1.258 12 N -0.692 5.692 13 C 0.475 3.525 14 O -0.586 6.586 15 C 0.147 3.853 16 H 0.163 0.837 17 O -0.538 6.538 18 C -0.103 4.103 19 C -0.081 4.081 20 C -0.090 4.090 21 C -0.037 4.037 22 Cl -0.049 7.049 23 C -0.040 4.040 24 Cl -0.052 7.052 25 C -0.094 4.094 26 H 0.035 0.965 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.270 0.730 30 H 0.408 0.592 31 H 0.389 0.611 32 H 0.176 0.824 33 H 0.172 0.828 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.057 -8.189 19.052 21.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.129 3.871 3 H 0.048 0.952 4 C -0.562 4.562 5 H 0.080 0.920 6 C -0.164 4.164 7 N -0.566 5.566 8 Si 0.747 3.253 9 H -0.200 1.200 10 H -0.205 1.205 11 H -0.183 1.183 12 N -0.342 5.342 13 C 0.261 3.739 14 O -0.467 6.467 15 C 0.084 3.916 16 H 0.180 0.820 17 O -0.344 6.344 18 C -0.105 4.105 19 C -0.099 4.099 20 C -0.109 4.109 21 C -0.065 4.065 22 Cl -0.020 7.020 23 C -0.067 4.067 24 Cl -0.023 7.023 25 C -0.112 4.112 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.243 0.757 31 H 0.239 0.761 32 H 0.193 0.807 33 H 0.189 0.811 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.838 -7.601 18.984 20.806 hybrid contribution -0.831 0.700 -0.378 1.150 sum -4.669 -6.902 18.606 20.386 Atomic orbital electron populations 1.22095 0.97234 1.01191 0.99328 1.18898 0.91828 0.93186 0.83166 0.95221 1.21160 1.44199 0.94946 0.95880 0.92010 1.25546 0.93838 1.01968 0.95085 1.69967 1.46549 1.37615 1.02438 0.86132 0.79630 0.81942 0.77587 1.19955 1.20475 1.18262 1.46352 1.64233 1.14440 1.09129 1.21930 0.78035 0.87618 0.86293 1.90663 1.52710 1.17683 1.85690 1.20771 0.99863 0.86918 0.84018 0.82041 1.86595 1.39289 1.57098 1.51405 1.20270 0.95453 0.95621 0.99128 1.21472 1.00481 0.90287 0.97626 1.21369 0.91068 1.02396 0.96047 1.21040 0.94591 0.88488 1.02340 1.98394 1.59379 1.53646 1.90589 1.20745 0.91853 0.92917 1.01194 1.98390 1.37610 1.92886 1.73420 1.20854 0.92652 0.99648 0.98093 0.94584 0.93556 0.92420 0.92049 0.75667 0.76084 0.80675 0.81065 0.83847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.76 9.47 71.98 0.68 -5.08 16 2 C 0.23 10.38 2.22 44.25 0.10 10.48 16 3 H 0.03 1.47 4.73 -2.38 -0.01 1.46 16 4 C -0.52 -26.79 9.05 25.60 0.23 -26.56 16 5 H 0.06 3.33 8.06 -2.91 -0.02 3.30 16 6 C 0.04 1.98 5.47 84.66 0.46 2.44 16 7 N -0.93 -53.46 13.96 21.45 0.30 -53.16 16 8 Si 0.92 43.36 26.99 68.60 1.85 45.21 16 9 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.26 -11.93 6.82 99.48 0.68 -11.25 16 12 N -0.69 -24.44 5.02 -446.08 -2.24 -26.68 16 13 C 0.48 15.87 7.11 87.66 0.62 16.49 16 14 O -0.59 -24.49 15.99 15.96 0.26 -24.23 16 15 C 0.15 3.38 3.62 29.10 0.11 3.49 16 16 H 0.16 2.86 8.00 -2.39 -0.02 2.84 16 17 O -0.54 -13.18 12.84 -129.99 -1.67 -14.85 16 18 C -0.10 -2.03 4.92 -19.87 -0.10 -2.13 16 19 C -0.08 -1.23 9.67 22.27 0.22 -1.01 16 20 C -0.09 -1.39 9.83 22.29 0.22 -1.17 16 21 C -0.04 -0.71 6.32 22.35 0.14 -0.57 16 22 Cl -0.05 -0.91 27.96 -2.72 -0.08 -0.99 16 23 C -0.04 -0.83 6.32 22.34 0.14 -0.69 16 24 Cl -0.05 -1.09 27.96 -2.72 -0.08 -1.17 16 25 C -0.09 -1.95 9.10 22.29 0.20 -1.75 16 26 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 28 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.27 14.71 8.31 -92.70 -0.77 13.94 16 30 H 0.41 12.05 8.59 -92.70 -0.80 11.25 16 31 H 0.39 8.21 7.25 -74.05 -0.54 7.67 16 32 H 0.18 1.61 8.04 -2.91 -0.02 1.59 16 33 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 34 H 0.14 2.82 6.78 -2.91 -0.02 2.80 16 Total: -1.00 -66.44 327.10 1.18 -65.26 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -0.19 Total: 16.67 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: 3.02 Total: -6.06 kcal Atomic # 7 Polarization: -77.90 SS G_CDS: -1.94 Total: -79.85 kcal Atomic # 8 Polarization: -37.67 SS G_CDS: -1.41 Total: -39.08 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.85 Total: 45.21 kcal Atomic # 17 Polarization: -2.00 SS G_CDS: -0.15 Total: -2.16 kcal Total: -66.44 1.18 -65.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822868291.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.630 kcal (2) G-P(sol) polarization free energy of solvation -66.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds