Wall clock time and date at job start Tue Mar 31 2020 11:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48493 * 109.47394 * 239.99732 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.34777 * 120.00376 * 275.00479 * 12 2 1 14 14 O 1.21279 * 119.99824 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00179 * 179.97438 * 13 12 2 16 16 H 1.09003 * 109.47494 * 305.00021 * 15 13 12 17 17 O 1.42899 * 109.47573 * 184.99601 * 15 13 12 18 18 C 1.50703 * 109.47240 * 64.99460 * 15 13 12 19 19 C 1.38271 * 119.97532 * 84.72662 * 18 15 13 20 20 C 1.38210 * 120.03296 * 179.72306 * 19 18 15 21 21 C 1.38347 * 120.00290 * 0.55519 * 20 19 18 22 22 Cl 1.73593 * 120.02122 * 179.74682 * 21 20 19 23 23 C 1.38445 * 119.95618 * 359.72103 * 21 20 19 24 24 Cl 1.73608 * 120.01636 * 180.02562 * 23 21 20 25 25 C 1.38206 * 119.98624 * 265.00242 * 18 15 13 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 30 30 H 0.97006 * 119.99921 * 94.99902 * 12 2 1 31 31 H 0.96701 * 114.00071 * 300.00481 * 17 15 13 32 32 H 1.07995 * 119.98618 * 359.97438 * 19 18 15 33 33 H 1.08004 * 119.99858 * 180.24935 * 20 19 18 34 34 H 1.08000 * 119.99743 * 0.02562 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8589 1.1587 2.4115 15 6 2.6488 -0.7286 3.5878 16 1 2.0274 -1.6030 3.7814 17 8 2.5871 0.1569 4.7076 18 6 4.0749 -1.1644 3.3699 19 6 5.1115 -0.2818 3.6116 20 6 6.4201 -0.6820 3.4177 21 6 6.6929 -1.9625 2.9705 22 17 8.3361 -2.4635 2.7204 23 6 5.6546 -2.8442 2.7230 24 17 5.9952 -4.4516 2.1624 25 6 4.3456 -2.4439 2.9231 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 0.7089 1.1612 -3.4844 30 1 2.2490 -1.6317 1.1527 31 1 3.1178 0.9587 4.6047 32 1 4.8988 0.7194 3.9561 33 1 7.2296 0.0065 3.6106 34 1 3.5352 -3.1311 2.7299 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822868293.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:22 Heat of formation + Delta-G solvation = -102.240242 kcal Electronic energy + Delta-G solvation = -21808.036521 eV Core-core repulsion = 18177.460362 eV Total energy + Delta-G solvation = -3630.576158 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.51604 -40.08931 -38.05018 -37.58424 -37.24673 -36.49066 -34.43851 -32.82395 -31.88412 -30.86336 -27.90340 -27.31269 -24.13734 -23.75878 -22.61842 -21.27821 -19.57026 -18.99170 -17.86633 -17.62144 -17.34522 -16.99538 -16.41879 -15.99368 -15.87428 -15.17388 -15.02000 -14.89573 -14.63862 -14.38286 -13.91498 -13.64746 -13.19837 -13.00144 -12.93479 -12.89962 -12.80987 -12.73451 -12.57465 -12.28488 -12.22810 -12.13561 -11.96050 -11.79883 -11.10092 -10.72436 -10.58194 -10.03852 -9.82458 -9.68326 -8.18167 -6.34819 -0.24974 -0.01064 0.75652 1.11403 1.42760 1.45064 1.55836 1.63780 2.18636 2.35353 2.55265 3.12771 3.31508 3.35786 3.53055 3.88184 3.93785 4.00045 4.10855 4.37241 4.65201 4.74725 4.75722 4.90747 4.92400 5.09285 5.16154 5.41581 5.43629 5.58286 5.66755 5.87275 6.09508 6.43133 6.72454 6.87681 7.30018 7.45566 8.88070 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.011298 B = 0.004738 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.792658 B = 5908.133782 C = 7497.379931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.271 3.729 3 H 0.001 0.999 4 C -0.542 4.542 5 H 0.072 0.928 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.965 3.035 9 H -0.261 1.261 10 H -0.279 1.279 11 H -0.285 1.285 12 N -0.695 5.695 13 C 0.475 3.525 14 O -0.586 6.586 15 C 0.150 3.850 16 H 0.159 0.841 17 O -0.535 6.535 18 C -0.103 4.103 19 C -0.093 4.093 20 C -0.092 4.092 21 C -0.038 4.038 22 Cl -0.049 7.049 23 C -0.038 4.038 24 Cl -0.047 7.047 25 C -0.086 4.086 26 H 0.042 0.958 27 H 0.066 0.934 28 H 0.013 0.987 29 H 0.265 0.735 30 H 0.404 0.596 31 H 0.390 0.610 32 H 0.155 0.845 33 H 0.167 0.833 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.512 -8.779 13.275 19.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.167 3.833 3 H 0.019 0.981 4 C -0.580 4.580 5 H 0.090 0.910 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.790 3.210 9 H -0.185 1.185 10 H -0.204 1.204 11 H -0.211 1.211 12 N -0.344 5.344 13 C 0.261 3.739 14 O -0.468 6.468 15 C 0.087 3.913 16 H 0.176 0.824 17 O -0.342 6.342 18 C -0.104 4.104 19 C -0.111 4.111 20 C -0.111 4.111 21 C -0.065 4.065 22 Cl -0.020 7.020 23 C -0.065 4.065 24 Cl -0.018 7.018 25 C -0.105 4.105 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.032 0.968 29 H 0.074 0.926 30 H 0.239 0.761 31 H 0.242 0.758 32 H 0.172 0.828 33 H 0.185 0.815 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 11.016 -8.482 13.329 19.260 hybrid contribution 0.696 -0.184 -1.430 1.601 sum 11.712 -8.666 11.899 18.811 Atomic orbital electron populations 1.21916 0.98223 0.99634 0.99673 1.18360 0.91129 0.91972 0.81804 0.98130 1.21524 1.32340 1.13426 0.90696 0.90984 1.25712 0.94892 0.95533 1.02106 1.70042 1.36993 1.23902 1.24496 0.85405 0.78155 0.78638 0.78840 1.18455 1.20422 1.21084 1.46274 1.64291 1.14259 1.09596 1.21888 0.78218 0.87666 0.86121 1.90671 1.52872 1.17875 1.85355 1.20681 0.92880 0.93820 0.83902 0.82365 1.86588 1.74068 1.35817 1.37701 1.20276 0.95432 0.94352 1.00377 1.21247 0.91439 1.00517 0.97876 1.21243 0.98143 0.93645 0.98042 1.21005 0.85977 0.95288 1.04273 1.98389 1.17243 1.91246 1.95076 1.20804 0.93860 0.88088 1.03777 1.98396 1.95422 1.20485 1.87516 1.21040 0.95214 0.96217 0.98006 0.93900 0.91510 0.96790 0.92577 0.76079 0.75849 0.82761 0.81545 0.81687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.65 9.26 71.98 0.67 -5.98 16 2 C 0.27 13.45 2.56 44.24 0.11 13.56 16 3 H 0.00 0.05 7.58 -2.39 -0.02 0.03 16 4 C -0.54 -27.72 8.73 25.60 0.22 -27.49 16 5 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 6 C 0.02 0.94 5.30 84.66 0.45 1.39 16 7 N -0.92 -51.49 11.32 21.45 0.24 -51.25 16 8 Si 0.96 41.40 29.54 68.60 2.03 43.42 16 9 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 10 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 12 N -0.69 -26.58 5.02 -446.11 -2.24 -28.82 16 13 C 0.48 17.09 7.12 87.66 0.62 17.71 16 14 O -0.59 -26.49 15.99 15.96 0.26 -26.23 16 15 C 0.15 3.68 3.62 29.10 0.11 3.78 16 16 H 0.16 3.04 8.05 -2.39 -0.02 3.02 16 17 O -0.54 -13.26 12.79 -129.99 -1.66 -14.92 16 18 C -0.10 -2.24 4.95 -19.86 -0.10 -2.34 16 19 C -0.09 -1.84 9.33 22.27 0.21 -1.63 16 20 C -0.09 -1.73 9.83 22.29 0.22 -1.51 16 21 C -0.04 -0.80 6.32 22.35 0.14 -0.66 16 22 Cl -0.05 -0.98 27.96 -2.72 -0.08 -1.06 16 23 C -0.04 -0.83 6.32 22.34 0.14 -0.68 16 24 Cl -0.05 -1.01 27.96 -2.72 -0.08 -1.09 16 25 C -0.09 -1.76 9.30 22.29 0.21 -1.55 16 26 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.07 3.62 6.07 -2.39 -0.01 3.60 16 28 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 30 H 0.40 12.87 8.37 -92.70 -0.78 12.10 16 31 H 0.39 8.11 7.14 -74.06 -0.53 7.59 16 32 H 0.15 2.49 6.62 -2.91 -0.02 2.47 16 33 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 34 H 0.17 2.65 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -66.19 326.82 1.33 -64.85 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -0.13 Total: 20.50 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 3.00 Total: -5.41 kcal Atomic # 7 Polarization: -78.07 SS G_CDS: -2.00 Total: -80.07 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -1.41 Total: -41.15 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 17 Polarization: -1.99 SS G_CDS: -0.15 Total: -2.15 kcal Total: -66.19 1.33 -64.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822868293.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.389 kcal (2) G-P(sol) polarization free energy of solvation -66.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds