Wall clock time and date at job start Tue Mar 31 2020 12:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 115.54779 * 2 1 4 4 C 1.50697 * 109.47249 * 65.93766 * 3 2 1 5 5 O 1.21307 * 120.00150 * 5.74420 * 4 3 2 6 6 N 1.34783 * 120.00097 * 185.73972 * 4 3 2 7 7 C 1.40593 * 119.99570 * 180.02562 * 6 4 3 8 8 C 1.40649 * 126.08750 * 359.97410 * 7 6 4 9 9 N 1.30904 * 108.38723 * 180.02562 * 8 7 6 10 10 N 1.40062 * 108.41055 * 0.02562 * 9 8 7 11 11 C 1.37329 * 126.07133 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00067 * 192.88558 * 11 10 9 13 13 C 1.38985 * 119.99584 * 12.89661 * 11 10 9 14 14 N 1.31288 * 120.00279 * 19.03908 * 13 11 10 15 15 Si 1.86805 * 119.99481 * 198.76000 * 13 11 10 16 16 H 1.48500 * 109.47313 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.46599 * 119.99995 * 15 13 11 18 18 H 1.48494 * 109.47355 * 239.99603 * 15 13 11 19 19 C 1.35683 * 126.07952 * 180.33135 * 7 6 4 20 20 C 1.52999 * 117.50041 * 214.33270 * 2 1 3 21 21 C 1.53000 * 117.49877 * 145.67068 * 2 1 3 22 22 Cl 1.80303 * 117.49720 * 215.00093 * 21 2 1 23 23 Cl 1.80290 * 117.49901 * 0.02562 * 21 2 1 24 24 H 1.09001 * 109.47274 * 55.96072 * 1 2 3 25 25 H 1.09001 * 109.47211 * 175.95090 * 1 2 3 26 26 H 1.08996 * 109.47504 * 295.95393 * 1 2 3 27 27 H 1.09003 * 109.47806 * 305.93638 * 3 2 1 28 28 H 1.09005 * 109.47028 * 185.93790 * 3 2 1 29 29 H 0.96991 * 119.99754 * 0.02562 * 6 4 3 30 30 H 1.07997 * 125.80387 * 0.02562 * 8 7 6 31 31 H 0.96999 * 120.00205 * 5.84712 * 14 13 11 32 32 H 1.08007 * 126.24837 * 359.95404 * 19 7 6 33 33 H 1.09002 * 117.50038 * 359.97438 * 20 2 1 34 34 H 1.08995 * 117.50079 * 144.99578 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 6 1.8838 2.0834 1.2973 5 8 1.2941 1.4972 2.1805 6 7 2.2654 3.3637 1.4764 7 6 1.9804 4.0193 2.6870 8 6 1.3073 3.4652 3.7907 9 7 1.2308 4.3763 4.7276 10 7 1.8488 5.5434 4.2611 11 6 1.9737 6.7237 4.9520 12 1 2.2781 7.6221 4.4356 13 6 1.7087 6.7619 6.3158 14 7 1.7076 5.6512 7.0157 15 14 1.3618 8.3947 7.1543 16 1 1.4287 9.4895 6.1532 17 1 0.0073 8.3611 7.7621 18 1 2.3742 8.6317 8.2145 19 6 2.2996 5.3014 2.9958 20 6 2.2365 -1.1207 -0.7654 21 6 2.2364 -1.1207 0.7654 22 17 3.7829 -0.7136 1.5982 23 17 1.2023 -2.3407 1.5976 24 1 -0.3634 0.5752 -0.8516 25 1 -0.3634 -1.0251 -0.0726 26 1 -0.3634 0.4497 0.9240 27 1 1.8024 1.9684 -0.8321 28 1 3.2688 1.2673 -0.1063 29 1 2.7367 3.8325 0.7701 30 1 0.9196 2.4593 3.8544 31 1 1.9742 4.8160 6.6006 32 1 2.8184 6.0017 2.3578 33 1 1.6113 -1.8583 -1.2686 34 1 3.1713 -0.8746 -1.2689 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822878314.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:41 Heat of formation + Delta-G solvation = 53.560743 kcal Electronic energy + Delta-G solvation = -21667.662124 eV Core-core repulsion = 18076.134755 eV Total energy + Delta-G solvation = -3591.527369 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.20729 -39.35582 -37.87746 -36.02660 -35.76346 -34.30731 -33.21488 -30.36353 -29.89626 -28.49320 -27.22069 -24.58179 -22.52196 -21.47715 -20.76390 -19.46867 -19.20908 -18.00691 -16.69578 -16.25741 -15.93320 -15.52657 -14.75013 -14.53665 -14.00331 -13.83109 -13.59534 -13.38862 -13.14499 -13.05572 -12.46046 -12.39508 -12.07204 -11.83666 -11.69519 -11.60199 -11.47483 -11.16259 -11.09106 -10.77534 -10.40993 -10.39308 -10.25368 -10.06332 -9.70684 -9.37328 -9.16223 -9.08543 -8.22326 -6.97619 -6.82353 -4.28103 1.18450 2.13167 2.82165 2.93922 3.15081 3.18960 3.35220 3.56061 3.58287 3.93827 3.97570 4.16906 4.24969 4.49883 4.61262 4.74134 5.01234 5.16120 5.22425 5.27778 5.33930 5.54629 5.65953 5.76893 6.14471 6.21468 6.31412 6.80043 6.91381 7.06975 7.53758 7.85774 8.13562 8.33169 8.56354 8.79522 9.27109 9.43488 10.37202 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.027654 B = 0.003051 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.254064 B = 9174.839102 C = 9402.196210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.064 4.064 3 C -0.110 4.110 4 C 0.502 3.498 5 O -0.520 6.520 6 N -0.627 5.627 7 C -0.055 4.055 8 C -0.011 4.011 9 N -0.336 5.336 10 N -0.141 5.141 11 C -0.399 4.399 12 H 0.110 0.890 13 C 0.023 3.977 14 N -0.803 5.803 15 Si 1.091 2.909 16 H -0.279 1.279 17 H -0.275 1.275 18 H -0.279 1.279 19 C -0.082 4.082 20 C -0.146 4.146 21 C 0.019 3.981 22 Cl -0.091 7.091 23 Cl -0.093 7.093 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.396 0.604 30 H 0.180 0.820 31 H 0.310 0.690 32 H 0.147 0.853 33 H 0.120 0.880 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.246 -9.986 -17.767 20.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.065 4.065 3 C -0.150 4.150 4 C 0.287 3.713 5 O -0.396 6.396 6 N -0.270 5.270 7 C -0.160 4.160 8 C -0.184 4.184 9 N -0.170 5.170 10 N 0.093 4.907 11 C -0.532 4.532 12 H 0.128 0.872 13 C -0.197 4.197 14 N -0.431 5.431 15 Si 0.914 3.086 16 H -0.204 1.204 17 H -0.201 1.201 18 H -0.205 1.205 19 C -0.233 4.233 20 C -0.183 4.183 21 C -0.032 4.032 22 Cl -0.064 7.064 23 Cl -0.066 7.066 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.106 0.894 27 H 0.122 0.878 28 H 0.116 0.884 29 H 0.229 0.771 30 H 0.197 0.803 31 H 0.126 0.874 32 H 0.164 0.836 33 H 0.139 0.861 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.038 -9.611 -14.341 17.295 hybrid contribution 1.265 -0.738 -2.679 3.053 sum 2.303 -10.349 -17.020 20.052 Atomic orbital electron populations 1.21503 0.89666 1.02873 1.04065 1.21895 0.96806 0.89773 0.98065 1.21293 1.02283 0.93784 0.97687 1.20065 0.80669 0.81564 0.88984 1.90614 1.40672 1.65054 1.43288 1.42489 1.56868 1.12009 1.15654 1.17175 1.16302 0.93031 0.89478 1.23833 1.03905 1.00012 0.90692 1.77474 1.23042 0.92894 1.23551 1.44623 1.29378 1.08701 1.08011 1.20904 1.52696 0.85030 0.94555 0.87206 1.26755 0.94299 1.05785 0.92889 1.70281 1.29717 1.02347 1.40735 0.83221 0.77886 0.71807 0.75686 1.20438 1.20084 1.20458 1.21282 1.13346 0.96606 0.92089 1.24211 1.03706 1.00689 0.89736 1.26741 0.87809 0.98080 0.90614 1.98754 1.32717 1.93472 1.81429 1.98733 1.68275 1.58079 1.81519 0.91412 0.91709 0.89420 0.87785 0.88362 0.77086 0.80342 0.87431 0.83596 0.86142 0.86323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 8.90 37.16 0.33 -0.97 16 2 C -0.06 -0.66 1.59 -154.51 -0.25 -0.90 16 3 C -0.11 -1.14 5.02 -27.89 -0.14 -1.28 16 4 C 0.50 7.90 7.45 -10.98 -0.08 7.82 16 5 O -0.52 -10.10 11.75 5.53 0.07 -10.03 16 6 N -0.63 -10.47 5.47 -10.00 -0.05 -10.53 16 7 C -0.05 -1.23 6.90 -83.84 -0.58 -1.80 16 8 C -0.01 -0.29 10.85 -17.04 -0.18 -0.47 16 9 N -0.34 -9.62 9.71 30.80 0.30 -9.32 16 10 N -0.14 -3.87 3.62 -11.41 -0.04 -3.91 16 11 C -0.40 -10.78 10.13 -14.81 -0.15 -10.93 16 12 H 0.11 2.70 7.90 -52.49 -0.41 2.29 16 13 C 0.02 0.61 5.39 -17.51 -0.09 0.51 16 14 N -0.80 -23.53 13.27 55.49 0.74 -22.79 16 15 Si 1.09 22.35 29.96 -169.99 -5.09 17.25 16 16 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 17 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 18 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 19 C -0.08 -1.92 11.49 -16.39 -0.19 -2.11 16 20 C -0.15 -1.13 9.60 -26.69 -0.26 -1.39 16 21 C 0.02 0.22 3.47 -26.69 -0.09 0.13 16 22 Cl -0.09 -1.22 27.66 -51.86 -1.43 -2.66 16 23 Cl -0.09 -1.18 27.77 -51.86 -1.44 -2.62 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.62 7.20 -51.93 -0.37 0.24 16 26 H 0.09 1.20 6.80 -51.93 -0.35 0.84 16 27 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.10 0.89 7.28 -51.93 -0.38 0.52 16 29 H 0.40 5.01 8.82 -40.82 -0.36 4.65 16 30 H 0.18 4.54 5.92 -52.49 -0.31 4.23 16 31 H 0.31 9.53 6.31 -40.82 -0.26 9.28 16 32 H 0.15 2.89 8.06 -52.48 -0.42 2.46 16 33 H 0.12 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 322.18 15.07 4.86 4.86 Total: -1.00 -33.54 322.18 -7.15 -40.69 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -3.36 Total: 10.45 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -1.68 Total: -11.39 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 0.94 Total: -46.55 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.07 Total: -10.03 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.09 Total: 17.25 kcal Atomic # 17 Polarization: -2.40 SS G_CDS: -2.87 Total: -5.27 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.54 -7.15 -40.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822878314.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.251 kcal (2) G-P(sol) polarization free energy of solvation -33.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds