Wall clock time and date at job start Tue Mar 31 2020 12:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 115.54779 * 2 1 4 4 C 1.50697 * 109.47249 * 65.93766 * 3 2 1 5 5 O 1.21307 * 120.00150 * 5.74420 * 4 3 2 6 6 N 1.34783 * 120.00097 * 185.73972 * 4 3 2 7 7 C 1.40593 * 119.99570 * 180.02562 * 6 4 3 8 8 C 1.40649 * 126.08750 * 359.97410 * 7 6 4 9 9 N 1.30904 * 108.38723 * 180.02562 * 8 7 6 10 10 N 1.40062 * 108.41055 * 0.02562 * 9 8 7 11 11 C 1.37329 * 126.07133 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00067 * 192.88558 * 11 10 9 13 13 C 1.38985 * 119.99584 * 12.89661 * 11 10 9 14 14 N 1.31288 * 120.00279 * 19.03908 * 13 11 10 15 15 Si 1.86805 * 119.99481 * 198.76000 * 13 11 10 16 16 H 1.48500 * 109.47313 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.46599 * 119.99995 * 15 13 11 18 18 H 1.48494 * 109.47355 * 239.99603 * 15 13 11 19 19 C 1.35683 * 126.07952 * 180.33135 * 7 6 4 20 20 C 1.52999 * 117.50041 * 214.33270 * 2 1 3 21 21 C 1.53000 * 117.49877 * 145.67068 * 2 1 3 22 22 Cl 1.80303 * 117.49720 * 215.00093 * 21 2 1 23 23 Cl 1.80290 * 117.49901 * 0.02562 * 21 2 1 24 24 H 1.09001 * 109.47274 * 55.96072 * 1 2 3 25 25 H 1.09001 * 109.47211 * 175.95090 * 1 2 3 26 26 H 1.08996 * 109.47504 * 295.95393 * 1 2 3 27 27 H 1.09003 * 109.47806 * 305.93638 * 3 2 1 28 28 H 1.09005 * 109.47028 * 185.93790 * 3 2 1 29 29 H 0.96991 * 119.99754 * 0.02562 * 6 4 3 30 30 H 1.07997 * 125.80387 * 0.02562 * 8 7 6 31 31 H 0.96999 * 120.00205 * 5.84712 * 14 13 11 32 32 H 1.08007 * 126.24837 * 359.95404 * 19 7 6 33 33 H 1.09002 * 117.50038 * 359.97438 * 20 2 1 34 34 H 1.08995 * 117.50079 * 144.99578 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 6 1.8838 2.0834 1.2973 5 8 1.2941 1.4972 2.1805 6 7 2.2654 3.3637 1.4764 7 6 1.9804 4.0193 2.6870 8 6 1.3073 3.4652 3.7907 9 7 1.2308 4.3763 4.7276 10 7 1.8488 5.5434 4.2611 11 6 1.9737 6.7237 4.9520 12 1 2.2781 7.6221 4.4356 13 6 1.7087 6.7619 6.3158 14 7 1.7076 5.6512 7.0157 15 14 1.3618 8.3947 7.1543 16 1 1.4287 9.4895 6.1532 17 1 0.0073 8.3611 7.7621 18 1 2.3742 8.6317 8.2145 19 6 2.2996 5.3014 2.9958 20 6 2.2365 -1.1207 -0.7654 21 6 2.2364 -1.1207 0.7654 22 17 3.7829 -0.7136 1.5982 23 17 1.2023 -2.3407 1.5976 24 1 -0.3634 0.5752 -0.8516 25 1 -0.3634 -1.0251 -0.0726 26 1 -0.3634 0.4497 0.9240 27 1 1.8024 1.9684 -0.8321 28 1 3.2688 1.2673 -0.1063 29 1 2.7367 3.8325 0.7701 30 1 0.9196 2.4593 3.8544 31 1 1.9742 4.8160 6.6006 32 1 2.8184 6.0017 2.3578 33 1 1.6113 -1.8583 -1.2686 34 1 3.1713 -0.8746 -1.2689 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822878314.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:40 Heat of formation + Delta-G solvation = 31.687004 kcal Electronic energy + Delta-G solvation = -21668.610641 eV Core-core repulsion = 18076.134755 eV Total energy + Delta-G solvation = -3592.475886 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.88424 -40.69205 -38.99132 -36.94841 -36.68961 -35.99945 -34.96798 -32.25868 -31.10091 -29.58204 -28.66472 -26.53389 -23.25766 -23.00787 -22.52840 -21.24332 -20.22251 -19.76337 -17.93734 -17.51163 -17.21449 -16.74391 -16.36925 -15.91820 -15.56085 -15.29367 -15.10227 -14.98929 -14.31609 -14.01682 -13.78484 -13.37263 -13.32340 -13.14248 -12.95484 -12.77476 -12.54170 -12.49246 -12.13347 -12.10202 -11.86805 -11.73437 -11.68673 -11.34863 -11.27980 -11.00471 -10.58428 -10.44870 -10.27343 -9.03110 -8.61984 -6.34737 0.33362 1.20048 1.24995 1.52460 1.62517 1.79083 1.83873 1.99193 2.23829 2.44376 2.50128 2.78551 3.04738 3.11927 3.40996 3.64890 3.96353 4.15192 4.33766 4.46243 4.60974 4.61593 4.63786 4.81572 4.90409 4.93501 4.98165 5.03348 5.33451 5.43888 5.57302 5.86840 6.39764 6.59000 6.78705 7.28206 7.43011 7.54408 8.27489 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.027654 B = 0.003051 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.254064 B = 9174.839102 C = 9402.196210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.074 4.074 3 C -0.099 4.099 4 C 0.498 3.502 5 O -0.558 6.558 6 N -0.623 5.623 7 C -0.032 4.032 8 C -0.035 4.035 9 N -0.379 5.379 10 N -0.172 5.172 11 C -0.427 4.427 12 H 0.131 0.869 13 C -0.021 4.021 14 N -0.848 5.848 15 Si 1.145 2.855 16 H -0.247 1.247 17 H -0.279 1.279 18 H -0.270 1.270 19 C -0.076 4.076 20 C -0.102 4.102 21 C -0.010 4.010 22 Cl -0.116 7.116 23 Cl -0.114 7.114 24 H 0.091 0.909 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.145 0.855 28 H 0.119 0.881 29 H 0.420 0.580 30 H 0.173 0.827 31 H 0.287 0.713 32 H 0.187 0.813 33 H 0.142 0.858 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.074 -9.165 -21.497 23.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.076 4.076 3 C -0.139 4.139 4 C 0.286 3.714 5 O -0.435 6.435 6 N -0.269 5.269 7 C -0.138 4.138 8 C -0.209 4.209 9 N -0.213 5.213 10 N 0.060 4.940 11 C -0.558 4.558 12 H 0.149 0.851 13 C -0.233 4.233 14 N -0.476 5.476 15 Si 0.961 3.039 16 H -0.170 1.170 17 H -0.205 1.205 18 H -0.195 1.195 19 C -0.227 4.227 20 C -0.139 4.139 21 C -0.062 4.062 22 Cl -0.089 7.089 23 Cl -0.087 7.087 24 H 0.110 0.890 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.163 0.837 28 H 0.137 0.863 29 H 0.257 0.743 30 H 0.190 0.810 31 H 0.101 0.899 32 H 0.204 0.796 33 H 0.160 0.840 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.894 -8.790 -18.139 20.245 hybrid contribution 1.003 -1.166 -1.741 2.323 sum 2.896 -9.956 -19.880 22.421 Atomic orbital electron populations 1.21456 0.90064 1.03322 1.03002 1.22022 0.96676 0.90081 0.98795 1.21366 1.03761 0.93534 0.95198 1.21178 0.78902 0.80859 0.90437 1.90619 1.41944 1.65766 1.45193 1.42530 1.57528 1.12579 1.14275 1.17265 1.13370 0.92596 0.90562 1.23939 1.05245 0.99708 0.91968 1.77392 1.24432 0.94184 1.25287 1.44843 1.31065 1.08641 1.09480 1.21422 1.53460 0.85698 0.95221 0.85141 1.28546 0.92566 1.08230 0.93936 1.70411 1.33749 1.02444 1.41039 0.82628 0.77515 0.68224 0.75566 1.16986 1.20471 1.19478 1.22064 1.11924 0.97582 0.91108 1.24414 1.04332 0.98463 0.86664 1.27210 0.87200 0.99268 0.92495 1.98746 1.34201 1.93665 1.82288 1.98727 1.68834 1.58837 1.82284 0.89007 0.91133 0.93338 0.83688 0.86312 0.74331 0.81018 0.89928 0.79597 0.83973 0.83577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.29 8.90 71.98 0.64 -1.65 16 2 C -0.07 -1.30 1.59 -52.18 -0.08 -1.38 16 3 C -0.10 -1.65 5.02 29.85 0.15 -1.50 16 4 C 0.50 14.74 7.45 87.65 0.65 15.39 16 5 O -0.56 -21.71 11.75 -3.11 -0.04 -21.75 16 6 N -0.62 -19.32 5.47 -303.91 -1.66 -20.98 16 7 C -0.03 -1.41 6.90 37.73 0.26 -1.15 16 8 C -0.03 -1.86 10.85 85.42 0.93 -0.93 16 9 N -0.38 -22.61 9.71 -56.47 -0.55 -23.16 16 10 N -0.17 -9.59 3.62 -190.00 -0.69 -10.28 16 11 C -0.43 -23.24 10.13 84.01 0.85 -22.39 16 12 H 0.13 6.28 7.90 -2.91 -0.02 6.26 16 13 C -0.02 -1.17 5.39 84.95 0.46 -0.71 16 14 N -0.85 -51.93 13.27 21.66 0.29 -51.64 16 15 Si 1.15 44.88 29.96 68.60 2.06 46.94 16 16 H -0.25 -8.26 7.11 99.48 0.71 -7.56 16 17 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 18 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 19 C -0.08 -3.47 11.49 83.38 0.96 -2.51 16 20 C -0.10 -1.13 9.60 30.62 0.29 -0.84 16 21 C -0.01 -0.22 3.47 30.62 0.11 -0.12 16 22 Cl -0.12 -2.98 27.66 -2.72 -0.08 -3.06 16 23 Cl -0.11 -2.83 27.77 -2.72 -0.08 -2.90 16 24 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.07 1.21 7.20 -2.39 -0.02 1.20 16 26 H 0.05 1.31 6.80 -2.39 -0.02 1.30 16 27 H 0.15 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.12 1.60 7.28 -2.38 -0.02 1.58 16 29 H 0.42 8.99 8.82 -92.71 -0.82 8.18 16 30 H 0.17 9.23 5.92 -2.91 -0.02 9.22 16 31 H 0.29 18.76 6.31 -92.71 -0.58 18.17 16 32 H 0.19 6.76 8.06 -2.91 -0.02 6.73 16 33 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.15 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -79.74 322.18 5.00 -74.75 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: 0.53 Total: 29.87 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 5.21 Total: -17.79 kcal Atomic # 7 Polarization: -103.45 SS G_CDS: -2.61 Total: -106.06 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.04 Total: -21.75 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.06 Total: 46.94 kcal Atomic # 17 Polarization: -5.81 SS G_CDS: -0.15 Total: -5.96 kcal Total: -79.74 5.00 -74.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822878314.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.434 kcal (2) G-P(sol) polarization free energy of solvation -79.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds