Wall clock time and date at job start Tue Mar 31 2020 12:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 115.54564 * 2 1 4 4 C 1.50701 * 109.47259 * 294.39202 * 3 2 1 5 5 O 1.21302 * 120.00053 * 358.21875 * 4 3 2 6 6 N 1.34780 * 119.99856 * 178.21460 * 4 3 2 7 7 C 1.40591 * 119.99903 * 179.97438 * 6 4 3 8 8 C 1.40653 * 126.08294 * 359.97438 * 7 6 4 9 9 N 1.30900 * 108.39053 * 180.02562 * 8 7 6 10 10 N 1.40079 * 108.40681 * 359.97438 * 9 8 7 11 11 C 1.37326 * 126.07016 * 179.97438 * 10 9 8 12 12 H 1.07991 * 119.99870 * 180.02562 * 11 10 9 13 13 C 1.38985 * 120.00013 * 0.02562 * 11 10 9 14 14 N 1.31295 * 120.00157 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00118 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47514 * 89.99576 * 15 13 11 17 17 H 1.48495 * 109.47318 * 209.99957 * 15 13 11 18 18 H 1.48504 * 109.46803 * 329.99895 * 15 13 11 19 19 C 1.35678 * 126.08516 * 180.02562 * 7 6 4 20 20 C 1.53000 * 117.50074 * 145.66973 * 2 1 3 21 21 C 1.52999 * 117.49843 * 214.33235 * 2 1 3 22 22 Cl 1.80301 * 117.49993 * 359.97438 * 21 2 1 23 23 Cl 1.80300 * 117.49780 * 144.99303 * 21 2 1 24 24 H 1.08999 * 109.47255 * 64.10491 * 1 2 3 25 25 H 1.08997 * 109.46639 * 184.10757 * 1 2 3 26 26 H 1.09001 * 109.46898 * 304.10105 * 1 2 3 27 27 H 1.09004 * 109.47190 * 174.39256 * 3 2 1 28 28 H 1.08996 * 109.47718 * 54.39716 * 3 2 1 29 29 H 0.96997 * 120.00284 * 0.02562 * 6 4 3 30 30 H 1.07997 * 125.80210 * 0.03291 * 8 7 6 31 31 H 0.97000 * 120.00062 * 180.02562 * 14 13 11 32 32 H 1.08004 * 126.24430 * 359.97438 * 19 7 6 33 33 H 1.08991 * 117.49770 * 215.00076 * 20 2 1 34 34 H 1.08997 * 117.49512 * 0.02759 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 6 1.8771 2.0867 -1.2940 5 8 1.2207 1.5273 -2.1470 6 7 2.3266 3.3399 -1.5034 7 6 2.0353 3.9987 -2.7108 8 6 1.2903 3.4736 -3.7821 9 7 1.2330 4.3773 -4.7273 10 7 1.9356 5.5108 -4.2988 11 6 2.1051 6.6736 -5.0095 12 1 2.6684 7.4901 -4.5825 13 6 1.5517 6.7996 -6.2781 14 7 0.8673 5.8068 -6.7974 15 14 1.7828 8.3810 -7.2451 16 1 3.0175 8.2844 -8.0644 17 1 0.6133 8.5923 -8.1354 18 1 1.9014 9.5237 -6.3041 19 6 2.4235 5.2536 -3.0503 20 6 2.2366 -1.1207 0.7654 21 6 2.2365 -1.1207 -0.7654 22 17 1.2023 -2.3407 -1.5978 23 17 3.7828 -0.7135 -1.5984 24 1 -0.3634 0.4488 -0.9245 25 1 -0.3632 -1.0250 0.0736 26 1 -0.3633 0.5762 0.8510 27 1 3.2693 1.2672 0.1004 28 1 1.8068 1.9663 0.8355 29 1 2.8517 3.7872 -0.8214 30 1 0.8418 2.4918 -3.8185 31 1 0.4813 5.8946 -7.6830 32 1 3.0109 5.9265 -2.4432 33 1 3.1714 -0.8746 1.2688 34 1 1.6113 -1.8582 1.2685 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822878322.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:44 Heat of formation + Delta-G solvation = 39.033992 kcal Electronic energy + Delta-G solvation = -21619.984587 eV Core-core repulsion = 18027.827290 eV Total energy + Delta-G solvation = -3592.157297 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.66751 -40.57159 -38.92350 -36.92619 -36.65341 -35.78692 -34.87974 -32.25724 -30.99485 -29.55250 -28.68453 -26.62750 -23.23337 -22.92903 -22.34087 -21.12420 -20.09411 -19.25205 -17.82046 -17.36558 -17.18392 -16.88288 -16.43692 -15.82446 -15.58121 -15.08771 -14.94255 -14.76232 -14.26465 -13.98340 -13.47757 -13.28312 -13.24017 -13.11423 -12.94812 -12.83325 -12.81156 -12.50575 -12.46187 -12.08500 -12.07753 -11.73604 -11.67382 -11.25510 -10.94945 -10.77248 -10.54136 -10.36084 -10.05716 -8.44769 -8.44602 -6.21002 0.35318 1.27016 1.27416 1.39915 1.57479 1.62013 1.94578 2.04364 2.19002 2.52816 2.61562 2.98729 3.11325 3.14674 3.45466 3.69316 4.00298 4.22660 4.48065 4.64149 4.65149 4.66023 4.68162 4.84871 4.94331 4.99479 5.03869 5.17231 5.33783 5.39926 5.60841 5.99522 6.38615 6.78634 6.89128 7.49438 7.57597 7.75194 8.54870 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.027656 B = 0.003030 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.180393 B = 9238.494403 C = 9435.770029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.074 4.074 3 C -0.099 4.099 4 C 0.497 3.503 5 O -0.559 6.559 6 N -0.623 5.623 7 C -0.037 4.037 8 C -0.058 4.058 9 N -0.313 5.313 10 N -0.171 5.171 11 C -0.356 4.356 12 H 0.140 0.860 13 C -0.007 4.007 14 N -0.827 5.827 15 Si 1.018 2.982 16 H -0.265 1.265 17 H -0.278 1.278 18 H -0.243 1.243 19 C -0.084 4.084 20 C -0.101 4.101 21 C -0.011 4.011 22 Cl -0.114 7.114 23 Cl -0.115 7.115 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.118 0.882 28 H 0.144 0.856 29 H 0.418 0.582 30 H 0.166 0.834 31 H 0.275 0.725 32 H 0.186 0.814 33 H 0.147 0.853 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.828 -9.229 19.768 22.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.075 4.075 3 C -0.139 4.139 4 C 0.285 3.715 5 O -0.437 6.437 6 N -0.269 5.269 7 C -0.143 4.143 8 C -0.233 4.233 9 N -0.145 5.145 10 N 0.059 4.941 11 C -0.487 4.487 12 H 0.157 0.843 13 C -0.218 4.218 14 N -0.455 5.455 15 Si 0.837 3.163 16 H -0.190 1.190 17 H -0.203 1.203 18 H -0.166 1.166 19 C -0.234 4.234 20 C -0.139 4.139 21 C -0.063 4.063 22 Cl -0.087 7.087 23 Cl -0.088 7.088 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.108 0.892 27 H 0.137 0.863 28 H 0.162 0.838 29 H 0.255 0.745 30 H 0.183 0.817 31 H 0.084 0.916 32 H 0.203 0.797 33 H 0.165 0.835 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.847 -9.502 17.695 20.449 hybrid contribution 0.501 0.248 -0.206 0.596 sum 4.348 -9.254 17.489 20.258 Atomic orbital electron populations 1.21467 0.90134 1.03211 1.03087 1.22021 0.96670 0.90102 0.98729 1.21363 1.03680 0.93475 0.95356 1.21141 0.79550 0.80783 0.90024 1.90615 1.40208 1.65943 1.46954 1.42517 1.53728 1.14915 1.15691 1.17326 1.11790 0.94065 0.91145 1.24132 1.05628 1.00471 0.93110 1.78136 1.19689 0.93988 1.22729 1.44809 1.29613 1.10096 1.09565 1.20584 1.36945 0.91245 0.99885 0.84301 1.26861 0.94187 1.02818 0.97962 1.70410 1.26732 1.32576 1.15814 0.84607 0.78237 0.75711 0.77725 1.19010 1.20271 1.16637 1.22006 1.11827 0.98492 0.91104 1.24412 1.04336 0.98477 0.86632 1.27228 0.87211 0.99308 0.92519 1.98727 1.68863 1.58851 1.82279 1.98745 1.34176 1.93654 1.82258 0.93156 0.91201 0.89158 0.86350 0.83782 0.74508 0.81727 0.91562 0.79723 0.83541 0.84017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 8.89 71.98 0.64 -1.79 16 2 C -0.07 -1.35 1.60 -52.18 -0.08 -1.43 16 3 C -0.10 -1.74 5.02 29.85 0.15 -1.59 16 4 C 0.50 15.27 7.50 87.66 0.66 15.93 16 5 O -0.56 -22.54 11.62 -3.10 -0.04 -22.57 16 6 N -0.62 -20.03 5.47 -303.92 -1.66 -21.69 16 7 C -0.04 -1.68 6.90 37.73 0.26 -1.42 16 8 C -0.06 -3.19 10.85 85.42 0.93 -2.26 16 9 N -0.31 -19.23 10.40 -56.47 -0.59 -19.82 16 10 N -0.17 -9.64 3.74 -190.02 -0.71 -10.35 16 11 C -0.36 -19.13 10.25 84.01 0.86 -18.27 16 12 H 0.14 6.46 7.83 -2.92 -0.02 6.44 16 13 C -0.01 -0.38 5.50 84.95 0.47 0.09 16 14 N -0.83 -48.81 11.81 21.66 0.26 -48.55 16 15 Si 1.02 39.29 29.55 68.60 2.03 41.32 16 16 H -0.27 -9.88 7.11 99.48 0.71 -9.18 16 17 H -0.28 -10.63 7.11 99.48 0.71 -9.92 16 18 H -0.24 -8.46 7.11 99.48 0.71 -7.75 16 19 C -0.08 -3.89 11.49 83.38 0.96 -2.93 16 20 C -0.10 -1.18 9.60 30.62 0.29 -0.89 16 21 C -0.01 -0.25 3.55 30.62 0.11 -0.14 16 22 Cl -0.11 -2.90 27.77 -2.72 -0.08 -2.97 16 23 Cl -0.12 -2.99 27.67 -2.72 -0.08 -3.07 16 24 H 0.05 1.43 6.62 -2.39 -0.02 1.42 16 25 H 0.07 1.26 7.20 -2.39 -0.02 1.25 16 26 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.12 1.66 7.27 -2.39 -0.02 1.64 16 28 H 0.14 1.46 8.14 -2.39 -0.02 1.45 16 29 H 0.42 9.38 8.83 -92.71 -0.82 8.56 16 30 H 0.17 9.21 5.92 -2.91 -0.02 9.20 16 31 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 32 H 0.19 6.71 8.06 -2.91 -0.02 6.69 16 33 H 0.15 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -79.81 323.12 4.72 -75.09 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 0.34 Total: 27.32 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: 5.24 Total: -14.70 kcal Atomic # 7 Polarization: -97.70 SS G_CDS: -2.70 Total: -100.41 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.04 Total: -22.57 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Atomic # 17 Polarization: -5.89 SS G_CDS: -0.15 Total: -6.04 kcal Total: -79.81 4.72 -75.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822878322.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.121 kcal (2) G-P(sol) polarization free energy of solvation -79.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds