Wall clock time and date at job start Tue Mar 31 2020 12:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31296 * 1 3 3 Si 1.86798 * 120.00305 * 2 1 4 4 H 1.48497 * 109.47071 * 274.98240 * 3 2 1 5 5 H 1.48497 * 109.47049 * 34.97887 * 3 2 1 6 6 H 1.48495 * 109.47183 * 154.97928 * 3 2 1 7 7 C 1.38985 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00064 * 185.95094 * 7 2 1 9 9 N 1.37329 * 120.00267 * 5.95343 * 7 2 1 10 10 C 1.36481 * 126.07119 * 174.14667 * 9 7 2 11 11 C 1.35679 * 107.50911 * 179.97438 * 10 9 7 12 12 N 1.40593 * 126.08554 * 180.26252 * 11 10 9 13 13 C 1.34775 * 120.00493 * 179.71322 * 12 11 10 14 14 O 1.21303 * 119.99836 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.00317 * 179.97438 * 13 12 11 16 16 C 1.53001 * 109.47124 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.46975 * 180.02562 * 16 15 13 18 18 H 1.09001 * 115.55326 * 330.67663 * 17 16 15 19 19 C 1.53003 * 117.49907 * 116.37976 * 17 16 15 20 20 C 1.52997 * 59.99894 * 107.48944 * 19 17 16 21 21 Cl 1.80305 * 117.49770 * 252.50912 * 20 19 17 22 22 Cl 1.80297 * 117.49726 * 107.49423 * 20 19 17 23 23 C 1.40652 * 107.83527 * 0.02562 * 11 10 9 24 24 N 1.30907 * 108.38410 * 359.97438 * 23 11 10 25 25 H 0.97002 * 119.99470 * 359.97438 * 1 2 3 26 26 H 1.07999 * 126.24949 * 359.97438 * 10 9 7 27 27 H 0.97004 * 119.99585 * 359.71051 * 12 11 10 28 28 H 1.08997 * 109.47519 * 300.00449 * 15 13 12 29 29 H 1.09009 * 109.46858 * 60.00191 * 15 13 12 30 30 H 1.08999 * 109.46941 * 299.99939 * 16 15 13 31 31 H 1.08995 * 109.47005 * 60.00455 * 16 15 13 32 32 H 1.09000 * 117.50256 * 214.98298 * 19 17 16 33 33 H 1.09004 * 117.49511 * 359.97438 * 19 17 16 34 34 H 1.07998 * 125.80639 * 179.97438 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.3892 2.1071 -1.3948 5 1 1.5011 2.6199 0.8026 6 1 3.5932 1.4120 0.5921 7 6 2.0078 -1.2037 0.0005 8 1 3.0835 -1.2062 0.0975 9 7 1.3267 -2.3898 -0.1223 10 6 1.8861 -3.6283 -0.2489 11 6 0.8732 -4.5261 -0.3419 12 7 1.0108 -5.9185 -0.4795 13 6 -0.0847 -6.6999 -0.5554 14 8 -1.1896 -6.2017 -0.5055 15 6 0.0629 -8.1922 -0.7034 16 6 -1.3227 -8.8382 -0.7649 17 6 -1.1728 -10.3535 -0.9145 18 1 -0.2743 -10.6881 -1.4328 19 6 -1.7018 -11.2313 0.2215 20 6 -2.4492 -11.1735 -1.1122 21 17 -4.0150 -10.2803 -1.1510 22 17 -2.3519 -12.6198 -2.1843 23 6 -0.3392 -3.8167 -0.2708 24 7 -0.0654 -2.5433 -0.1396 25 1 -0.4849 0.8401 0.0004 26 1 2.9423 -3.8527 -0.2710 27 1 1.8944 -6.3169 -0.5197 28 1 0.6087 -8.4143 -1.6203 29 1 0.6110 -8.5896 0.1510 30 1 -1.8681 -8.6162 0.1524 31 1 -1.8712 -8.4409 -1.6189 32 1 -1.1512 -12.1436 0.4509 33 1 -2.1562 -10.7292 1.0757 34 1 -1.3279 -4.2490 -0.3165 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824757722.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:36 Heat of formation + Delta-G solvation = 52.167680 kcal Electronic energy + Delta-G solvation = -20625.759141 eV Core-core repulsion = 17034.171364 eV Total energy + Delta-G solvation = -3591.587777 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.94482 -38.93055 -38.20014 -36.30262 -35.92353 -34.20148 -33.15594 -32.19373 -30.20539 -27.89792 -25.55525 -24.34651 -22.62812 -21.15813 -20.81216 -20.09827 -19.37974 -17.52349 -16.75398 -16.51131 -15.54840 -15.46955 -15.22759 -15.10494 -14.09662 -13.84252 -13.57358 -13.21927 -13.11048 -12.92114 -12.76923 -12.26621 -12.16235 -11.67765 -11.61703 -11.44082 -11.40766 -11.37062 -11.25373 -11.11333 -10.92670 -10.52758 -10.45458 -10.13104 -10.04576 -9.17261 -9.13913 -8.79098 -8.04876 -6.68776 -6.55755 -4.22321 0.89772 1.89662 2.84330 2.84681 3.04207 3.05451 3.10479 3.55838 3.68846 3.81326 3.90504 4.01756 4.43139 4.60935 4.71591 4.85733 5.01444 5.05880 5.13747 5.16419 5.28839 5.50108 5.58616 5.90410 6.13805 6.24838 6.47787 6.92075 6.97226 7.14101 7.25740 7.87000 8.19693 8.30531 8.64754 8.88330 9.39063 9.68191 10.40624 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.042841 B = 0.002114 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.420616 B =13240.604561 C =13675.251591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.324 4.324 8 H 0.116 0.884 9 N -0.144 5.144 10 C -0.084 4.084 11 C -0.060 4.060 12 N -0.626 5.626 13 C 0.496 3.504 14 O -0.536 6.536 15 C -0.132 4.132 16 C -0.079 4.079 17 C -0.111 4.111 18 H 0.130 0.870 19 C -0.143 4.143 20 C -0.004 4.004 21 Cl -0.086 7.086 22 Cl -0.102 7.102 23 C -0.034 4.034 24 N -0.262 5.262 25 H 0.274 0.726 26 H 0.145 0.855 27 H 0.396 0.604 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.976 -21.666 -1.055 21.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.134 0.866 9 N 0.089 4.911 10 C -0.235 4.235 11 C -0.166 4.166 12 N -0.269 5.269 13 C 0.282 3.718 14 O -0.413 6.413 15 C -0.172 4.172 16 C -0.117 4.117 17 C -0.130 4.130 18 H 0.148 0.852 19 C -0.181 4.181 20 C -0.055 4.055 21 Cl -0.059 7.059 22 Cl -0.075 7.075 23 C -0.209 4.209 24 N -0.093 5.093 25 H 0.085 0.915 26 H 0.162 0.838 27 H 0.229 0.771 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.634 -20.016 -0.981 20.050 hybrid contribution 1.186 -0.521 -0.270 1.323 sum 0.552 -20.537 -1.251 20.582 Atomic orbital electron populations 1.70227 1.06155 1.27951 1.35306 1.25644 0.95686 1.00273 0.95497 0.85817 0.79435 0.80076 0.78843 1.19652 1.20115 1.18801 1.19865 0.92122 0.80718 1.52944 0.86648 1.44544 1.03998 1.03721 1.38877 1.21269 0.96816 0.85871 1.19573 1.17294 0.94235 0.81880 1.23160 1.42555 1.08298 1.05167 1.70852 1.20357 0.84558 0.88513 0.78399 1.90612 1.25575 1.75106 1.50032 1.21550 0.98912 0.92659 1.04116 1.21042 0.96839 0.88806 1.05017 1.23384 0.94411 0.95341 0.99862 0.85234 1.24095 0.99675 1.02862 0.91468 1.26841 0.87569 0.91442 0.99666 1.98771 1.33214 1.75400 1.98509 1.98746 1.97848 1.42002 1.68907 1.24114 0.98030 0.90914 1.07853 1.78244 0.90310 1.15168 1.25553 0.91487 0.83761 0.77081 0.89016 0.88993 0.89865 0.89399 0.86279 0.85972 0.80737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.62 11.84 55.49 0.66 -20.96 16 2 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 3 Si 0.93 18.94 29.56 -169.99 -5.02 13.91 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 7 C -0.32 -8.59 10.24 -14.81 -0.15 -8.74 16 8 H 0.12 2.73 7.84 -52.48 -0.41 2.31 16 9 N -0.14 -3.95 3.74 -11.41 -0.04 -3.99 16 10 C -0.08 -1.97 11.49 -16.40 -0.19 -2.16 16 11 C -0.06 -1.37 6.90 -83.84 -0.58 -1.95 16 12 N -0.63 -10.54 5.47 -10.00 -0.05 -10.59 16 13 C 0.50 7.94 7.80 -10.99 -0.09 7.85 16 14 O -0.54 -10.95 13.13 5.54 0.07 -10.88 16 15 C -0.13 -1.28 5.66 -27.89 -0.16 -1.44 16 16 C -0.08 -0.79 3.88 -26.73 -0.10 -0.89 16 17 C -0.11 -0.81 5.58 -90.62 -0.51 -1.32 16 18 H 0.13 0.74 8.07 -51.93 -0.42 0.32 16 19 C -0.14 -0.91 9.86 -26.73 -0.26 -1.17 16 20 C 0.00 -0.03 3.62 -26.73 -0.10 -0.13 16 21 Cl -0.09 -0.91 28.23 -51.86 -1.46 -2.37 16 22 Cl -0.10 -0.89 29.29 -51.86 -1.52 -2.41 16 23 C -0.03 -0.88 10.85 -17.04 -0.18 -1.07 16 24 N -0.26 -7.65 10.42 30.80 0.32 -7.33 16 25 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.14 2.79 8.06 -52.49 -0.42 2.37 16 27 H 0.40 4.96 8.83 -40.82 -0.36 4.60 16 28 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 30 H 0.08 0.92 7.83 -51.93 -0.41 0.52 16 31 H 0.09 1.05 7.98 -51.93 -0.41 0.63 16 32 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.12 0.75 8.03 -51.93 -0.42 0.33 16 34 H 0.18 4.57 5.92 -52.49 -0.31 4.26 16 LS Contribution 329.64 15.07 4.97 4.97 Total: -1.00 -33.65 329.64 -8.06 -41.71 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -3.57 Total: 7.84 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -2.41 Total: -9.91 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.88 Total: -42.87 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.07 Total: -10.88 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.91 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -2.98 Total: -4.78 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.65 -8.06 -41.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824757722.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.882 kcal (2) G-P(sol) polarization free energy of solvation -33.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds