Wall clock time and date at job start Tue Mar 31 2020 12:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31296 * 1 3 3 Si 1.86798 * 120.00305 * 2 1 4 4 H 1.48497 * 109.47071 * 274.98240 * 3 2 1 5 5 H 1.48497 * 109.47049 * 34.97887 * 3 2 1 6 6 H 1.48495 * 109.47183 * 154.97928 * 3 2 1 7 7 C 1.38985 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00064 * 185.95094 * 7 2 1 9 9 N 1.37329 * 120.00267 * 5.95343 * 7 2 1 10 10 C 1.36481 * 126.07119 * 174.14667 * 9 7 2 11 11 C 1.35679 * 107.50911 * 179.97438 * 10 9 7 12 12 N 1.40593 * 126.08554 * 180.26252 * 11 10 9 13 13 C 1.34775 * 120.00493 * 179.71322 * 12 11 10 14 14 O 1.21303 * 119.99836 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.00317 * 179.97438 * 13 12 11 16 16 C 1.53001 * 109.47124 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.46975 * 180.02562 * 16 15 13 18 18 H 1.09001 * 115.55326 * 330.67663 * 17 16 15 19 19 C 1.53003 * 117.49907 * 116.37976 * 17 16 15 20 20 C 1.52997 * 59.99894 * 107.48944 * 19 17 16 21 21 Cl 1.80305 * 117.49770 * 252.50912 * 20 19 17 22 22 Cl 1.80297 * 117.49726 * 107.49423 * 20 19 17 23 23 C 1.40652 * 107.83527 * 0.02562 * 11 10 9 24 24 N 1.30907 * 108.38410 * 359.97438 * 23 11 10 25 25 H 0.97002 * 119.99470 * 359.97438 * 1 2 3 26 26 H 1.07999 * 126.24949 * 359.97438 * 10 9 7 27 27 H 0.97004 * 119.99585 * 359.71051 * 12 11 10 28 28 H 1.08997 * 109.47519 * 300.00449 * 15 13 12 29 29 H 1.09009 * 109.46858 * 60.00191 * 15 13 12 30 30 H 1.08999 * 109.46941 * 299.99939 * 16 15 13 31 31 H 1.08995 * 109.47005 * 60.00455 * 16 15 13 32 32 H 1.09000 * 117.50256 * 214.98298 * 19 17 16 33 33 H 1.09004 * 117.49511 * 359.97438 * 19 17 16 34 34 H 1.07998 * 125.80639 * 179.97438 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.3892 2.1071 -1.3948 5 1 1.5011 2.6199 0.8026 6 1 3.5932 1.4120 0.5921 7 6 2.0078 -1.2037 0.0005 8 1 3.0835 -1.2062 0.0975 9 7 1.3267 -2.3898 -0.1223 10 6 1.8861 -3.6283 -0.2489 11 6 0.8732 -4.5261 -0.3419 12 7 1.0108 -5.9185 -0.4795 13 6 -0.0847 -6.6999 -0.5554 14 8 -1.1896 -6.2017 -0.5055 15 6 0.0629 -8.1922 -0.7034 16 6 -1.3227 -8.8382 -0.7649 17 6 -1.1728 -10.3535 -0.9145 18 1 -0.2743 -10.6881 -1.4328 19 6 -1.7018 -11.2313 0.2215 20 6 -2.4492 -11.1735 -1.1122 21 17 -4.0150 -10.2803 -1.1510 22 17 -2.3519 -12.6198 -2.1843 23 6 -0.3392 -3.8167 -0.2708 24 7 -0.0654 -2.5433 -0.1396 25 1 -0.4849 0.8401 0.0004 26 1 2.9423 -3.8527 -0.2710 27 1 1.8944 -6.3169 -0.5197 28 1 0.6087 -8.4143 -1.6203 29 1 0.6110 -8.5896 0.1510 30 1 -1.8681 -8.6162 0.1524 31 1 -1.8712 -8.4409 -1.6189 32 1 -1.1512 -12.1436 0.4509 33 1 -2.1562 -10.7292 1.0757 34 1 -1.3279 -4.2490 -0.3165 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824757722.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:36 Heat of formation + Delta-G solvation = 30.415578 kcal Electronic energy + Delta-G solvation = -20626.702383 eV Core-core repulsion = 17034.171364 eV Total energy + Delta-G solvation = -3592.531019 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.66288 -40.28914 -39.05701 -36.97903 -36.63983 -35.86502 -34.91122 -33.13164 -32.15388 -29.65053 -27.09237 -25.71172 -23.22182 -22.83615 -21.86434 -21.34173 -21.10405 -19.27471 -17.82467 -17.42794 -17.36301 -16.75905 -16.56412 -16.03128 -15.66323 -15.35129 -14.85233 -14.69756 -14.47500 -14.05792 -13.56727 -13.44598 -13.27452 -12.99588 -12.92505 -12.84954 -12.78373 -12.36330 -12.12859 -12.09541 -12.06036 -11.85315 -11.77609 -11.13610 -10.98371 -10.80654 -10.74040 -10.50744 -10.07990 -8.48229 -8.45892 -6.22646 0.25639 1.23292 1.25549 1.40235 1.58311 1.59339 1.91565 2.08290 2.24927 2.42341 2.58126 2.96077 3.09446 3.19524 3.43208 3.82755 4.06852 4.27595 4.40094 4.47023 4.53897 4.65065 4.72600 4.79436 4.94692 5.02900 5.11948 5.14920 5.32108 5.36085 5.56924 5.98503 6.35936 6.76536 6.86907 7.47600 7.54503 7.72442 8.53569 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.042841 B = 0.002114 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.420616 B =13240.604561 C =13675.251591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C -0.008 4.008 3 Si 1.019 2.981 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.241 1.241 7 C -0.355 4.355 8 H 0.141 0.859 9 N -0.171 5.171 10 C -0.082 4.082 11 C -0.042 4.042 12 N -0.619 5.619 13 C 0.490 3.510 14 O -0.585 6.585 15 C -0.115 4.115 16 C -0.078 4.078 17 C -0.100 4.100 18 H 0.157 0.843 19 C -0.124 4.124 20 C -0.020 4.020 21 Cl -0.115 7.115 22 Cl -0.105 7.105 23 C -0.063 4.063 24 N -0.314 5.314 25 H 0.275 0.725 26 H 0.189 0.811 27 H 0.421 0.579 28 H 0.126 0.874 29 H 0.130 0.870 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.144 0.856 33 H 0.123 0.877 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.264 -23.598 -0.933 23.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.164 1.164 7 C -0.485 4.485 8 H 0.158 0.842 9 N 0.060 4.940 10 C -0.232 4.232 11 C -0.149 4.149 12 N -0.265 5.265 13 C 0.279 3.721 14 O -0.465 6.465 15 C -0.155 4.155 16 C -0.116 4.116 17 C -0.119 4.119 18 H 0.174 0.826 19 C -0.162 4.162 20 C -0.072 4.072 21 Cl -0.089 7.089 22 Cl -0.078 7.078 23 C -0.238 4.238 24 N -0.146 5.146 25 H 0.085 0.915 26 H 0.206 0.794 27 H 0.259 0.741 28 H 0.144 0.856 29 H 0.148 0.852 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.162 0.838 33 H 0.141 0.859 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.696 -22.019 -0.861 22.200 hybrid contribution 0.137 -0.118 -0.320 0.368 sum 2.833 -22.137 -1.181 22.349 Atomic orbital electron populations 1.70414 1.08498 1.29009 1.37583 1.26897 0.96448 1.04411 0.94196 0.84576 0.78562 0.74168 0.78882 1.19236 1.20256 1.16419 1.20606 0.93392 0.81062 1.53483 0.84159 1.44838 1.03536 1.05297 1.40363 1.22046 0.98891 0.84617 1.17617 1.17386 0.92478 0.84742 1.20251 1.42571 1.10249 1.02661 1.71017 1.21640 0.83339 0.91029 0.76051 1.90608 1.27659 1.76571 1.51623 1.21588 0.99429 0.87027 1.07417 1.20932 0.96669 0.90833 1.03131 1.23355 0.94588 0.93329 1.00627 0.82569 1.24249 0.98170 1.03311 0.90445 1.27101 0.86755 0.91783 1.01528 1.98768 1.35339 1.76137 1.98610 1.98746 1.97756 1.42018 1.69237 1.24166 0.99119 0.91149 1.09405 1.78132 0.92344 1.16787 1.27345 0.91494 0.79413 0.74110 0.85563 0.85180 0.91596 0.91997 0.83763 0.85892 0.81764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.37 11.84 21.66 0.26 -48.12 16 2 C -0.01 -0.43 5.50 84.95 0.47 0.03 16 3 Si 1.02 38.78 29.56 68.60 2.03 40.81 16 4 H -0.27 -9.90 7.11 99.48 0.71 -9.20 16 5 H -0.28 -10.47 7.11 99.48 0.71 -9.76 16 6 H -0.24 -8.20 7.11 99.48 0.71 -7.49 16 7 C -0.35 -18.81 10.24 84.01 0.86 -17.95 16 8 H 0.14 6.42 7.84 -2.91 -0.02 6.40 16 9 N -0.17 -9.52 3.74 -190.02 -0.71 -10.23 16 10 C -0.08 -3.71 11.49 83.38 0.96 -2.75 16 11 C -0.04 -1.90 6.90 37.73 0.26 -1.64 16 12 N -0.62 -19.42 5.47 -303.93 -1.66 -21.08 16 13 C 0.49 14.92 7.80 87.66 0.68 15.60 16 14 O -0.58 -24.36 13.13 -3.10 -0.04 -24.40 16 15 C -0.12 -1.80 5.66 29.85 0.17 -1.63 16 16 C -0.08 -1.40 3.88 30.60 0.12 -1.28 16 17 C -0.10 -1.15 5.58 -10.79 -0.06 -1.21 16 18 H 0.16 1.01 8.07 -2.39 -0.02 0.99 16 19 C -0.12 -1.19 9.86 30.59 0.30 -0.89 16 20 C -0.02 -0.31 3.62 30.59 0.11 -0.20 16 21 Cl -0.12 -2.44 28.23 -2.72 -0.08 -2.52 16 22 Cl -0.10 -1.63 29.29 -2.72 -0.08 -1.71 16 23 C -0.06 -3.46 10.85 85.42 0.93 -2.53 16 24 N -0.31 -19.16 10.42 -56.47 -0.59 -19.74 16 25 H 0.28 14.81 8.31 -92.71 -0.77 14.04 16 26 H 0.19 6.62 8.06 -2.91 -0.02 6.59 16 27 H 0.42 8.83 8.83 -92.71 -0.82 8.02 16 28 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.13 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.07 1.42 7.83 -2.39 -0.02 1.40 16 31 H 0.06 1.46 7.98 -2.39 -0.02 1.44 16 32 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.12 1.22 8.03 -2.39 -0.02 1.20 16 34 H 0.17 9.17 5.92 -2.91 -0.02 9.15 16 Total: -1.00 -79.85 329.64 4.26 -75.59 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.33 Total: 25.86 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 4.80 Total: -14.46 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -2.70 Total: -99.17 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.04 Total: -24.40 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.81 kcal Atomic # 17 Polarization: -4.08 SS G_CDS: -0.16 Total: -4.23 kcal Total: -79.85 4.26 -75.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824757722.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.010 kcal (2) G-P(sol) polarization free energy of solvation -79.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds