Wall clock time and date at job start Tue Mar 31 2020 10:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47760 * 2 1 4 4 C 1.50712 * 109.47034 * 120.00229 * 2 1 3 5 5 O 1.21286 * 119.99637 * 80.33191 * 4 2 1 6 6 N 1.34771 * 119.99663 * 260.33561 * 4 2 1 7 7 C 1.37095 * 119.99909 * 185.02142 * 6 4 2 8 8 H 1.08003 * 120.00077 * 13.82645 * 7 6 4 9 9 C 1.38946 * 120.00403 * 193.83283 * 7 6 4 10 10 N 1.31411 * 119.99906 * 20.60054 * 9 7 6 11 11 Si 1.86798 * 120.00298 * 200.60000 * 9 7 6 12 12 H 1.48504 * 109.46927 * 60.00296 * 11 9 7 13 13 H 1.48499 * 109.47154 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.47433 * 300.00309 * 11 9 7 15 15 C 1.46494 * 120.00338 * 5.01373 * 6 4 2 16 16 C 1.50702 * 109.47215 * 84.31850 * 15 6 4 17 17 O 1.20824 * 119.99517 * 359.97438 * 16 15 6 18 18 O 1.34233 * 120.00188 * 180.02562 * 16 15 6 19 19 C 1.50706 * 109.47022 * 239.99601 * 2 1 3 20 20 C 1.33347 * 125.18538 * 119.98225 * 19 2 1 21 21 C 1.38473 * 114.92627 * 179.77475 * 20 19 2 22 22 C 1.33495 * 114.88552 * 0.49956 * 21 20 19 23 23 Cl 1.73600 * 125.21107 * 179.79490 * 22 21 20 24 24 S 1.75882 * 125.19051 * 300.03071 * 19 2 1 25 25 H 1.09003 * 109.47358 * 181.27521 * 1 2 3 26 26 H 1.08998 * 109.46665 * 301.27171 * 1 2 3 27 27 H 1.08998 * 109.47205 * 61.26898 * 1 2 3 28 28 H 0.97005 * 120.00700 * 179.97438 * 10 9 7 29 29 H 1.09001 * 109.47483 * 204.32077 * 15 6 4 30 30 H 1.09000 * 109.47464 * 324.32011 * 15 6 4 31 31 H 0.96695 * 116.99458 * 180.02562 * 18 16 15 32 32 H 1.08001 * 122.53931 * 0.06773 * 20 19 2 33 33 H 1.08000 * 122.55928 * 180.31868 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.0681 -1.9225 1.2588 6 7 2.4417 0.0009 2.2995 7 6 2.9943 -0.6395 3.3783 8 1 3.3076 -1.6695 3.2926 9 6 3.1511 0.0364 4.5821 10 7 2.4347 1.1095 4.8313 11 14 4.3803 -0.5802 5.8464 12 1 5.7421 -0.5790 5.2542 13 1 4.3570 0.3100 7.0347 14 1 4.0194 -1.9615 6.2549 15 6 2.2963 1.4586 2.3085 16 6 0.9059 1.8220 2.7622 17 8 0.1172 0.9524 3.0482 18 8 0.5433 3.1116 2.8477 19 6 2.0323 -0.7105 -1.2305 20 6 2.8019 -0.1645 -2.1727 21 6 3.1439 -1.0139 -3.2115 22 6 2.6424 -2.2474 -3.1168 23 17 2.8956 -3.5219 -4.2680 24 16 1.6920 -2.3860 -1.6434 25 1 -0.3634 -1.0274 0.0229 26 1 -0.3632 0.5335 0.8784 27 1 -0.3633 0.4940 -0.9011 28 1 2.5438 1.5813 5.6719 29 1 3.0264 1.8924 2.9918 30 1 2.4636 1.8468 1.3038 31 1 -0.3586 3.2952 3.1439 32 1 3.1372 0.8611 -2.1266 33 1 3.7664 -0.7014 -4.0368 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825972504.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:52 Heat of formation + Delta-G solvation = -82.014713 kcal Electronic energy + Delta-G solvation = -22457.997697 eV Core-core repulsion = 18830.342290 eV Total energy + Delta-G solvation = -3627.655407 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.032 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -39.75333 -38.57020 -37.62152 -36.46618 -35.36479 -34.66080 -33.29015 -31.67226 -28.21891 -27.81475 -25.43810 -24.15776 -22.60589 -21.22199 -19.50858 -19.10835 -17.27476 -17.08383 -16.86495 -16.48374 -15.67858 -15.41875 -14.89646 -14.57578 -14.16058 -13.91747 -13.51212 -13.20206 -13.15585 -12.93043 -12.53946 -12.23321 -11.88039 -11.84239 -11.51383 -11.46399 -11.27877 -11.13213 -10.99753 -10.76016 -10.53629 -10.39511 -10.38966 -10.22286 -9.75614 -9.12220 -8.77412 -8.28015 -8.11450 -8.01340 -6.53425 -3.97203 1.04045 1.37438 2.18788 2.43129 2.78346 3.10393 3.19375 3.23283 3.31974 3.53947 3.96980 4.14862 4.58340 4.90001 4.98042 5.28679 5.39014 5.45043 5.52707 5.66639 5.86789 5.98664 6.06913 6.15140 6.28655 6.36144 6.48682 6.50418 6.58743 7.39360 7.46046 7.85157 8.26395 8.91565 8.98330 9.19849 9.71011 10.54394 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.018297 B = 0.004317 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.918684 B = 6484.709484 C = 7423.413908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.045 4.045 3 H 0.098 0.902 4 C 0.463 3.537 5 O -0.563 6.563 6 N -0.426 5.426 7 C -0.302 4.302 8 H 0.109 0.891 9 C 0.030 3.970 10 N -0.885 5.885 11 Si 0.932 3.068 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.273 1.273 15 C 0.138 3.862 16 C 0.490 3.510 17 O -0.503 6.503 18 O -0.533 6.533 19 C -0.140 4.140 20 C -0.148 4.148 21 C -0.119 4.119 22 C -0.180 4.180 23 Cl -0.032 7.032 24 S 0.221 5.779 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.273 0.727 29 H 0.137 0.863 30 H 0.078 0.922 31 H 0.393 0.607 32 H 0.144 0.856 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.588 3.414 -12.145 12.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.069 4.069 3 H 0.116 0.884 4 C 0.250 3.750 5 O -0.446 6.446 6 N -0.144 5.144 7 C -0.429 4.429 8 H 0.127 0.873 9 C -0.173 4.173 10 N -0.525 5.525 11 Si 0.758 3.242 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.198 1.198 15 C 0.012 3.988 16 C 0.330 3.670 17 O -0.388 6.388 18 O -0.344 6.344 19 C -0.259 4.259 20 C -0.178 4.178 21 C -0.152 4.152 22 C -0.324 4.324 23 Cl -0.003 7.003 24 S 0.486 5.514 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.154 0.846 30 H 0.096 0.904 31 H 0.249 0.751 32 H 0.162 0.838 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.193 1.274 -11.430 11.563 hybrid contribution 0.763 1.134 0.332 1.407 sum -0.430 2.408 -11.098 11.365 Atomic orbital electron populations 1.21805 0.91982 1.03292 1.02588 1.19947 0.97657 0.99198 0.90068 0.88375 1.19697 0.82301 0.87854 0.85130 1.90540 1.57853 1.13407 1.82813 1.43413 1.52298 1.03450 1.15259 1.19730 1.34935 0.99382 0.88813 0.87326 1.25227 0.97593 0.96720 0.97737 1.69777 1.36692 1.20406 1.25614 0.85898 0.80513 0.78796 0.78995 1.19764 1.20933 1.19770 1.20850 0.92692 0.84271 1.01015 1.23828 0.90525 0.79077 0.73538 1.90614 1.53258 1.49736 1.45228 1.84526 1.37480 1.30857 1.81523 1.24320 1.04038 0.97499 1.00039 1.19851 1.01834 1.01564 0.94586 1.20000 1.02666 0.91587 1.00919 1.25563 1.12343 0.94505 0.99983 1.98327 1.95748 1.49087 1.57163 1.84821 1.47512 1.09298 1.09786 0.91888 0.90776 0.92031 0.91689 0.84588 0.90411 0.75076 0.83823 0.84107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.09 37.16 0.34 -1.98 16 2 C -0.05 -0.81 2.65 -92.91 -0.25 -1.05 16 3 H 0.10 1.52 5.59 -51.93 -0.29 1.23 16 4 C 0.46 10.71 6.35 -10.98 -0.07 10.64 16 5 O -0.56 -14.76 15.00 5.55 0.08 -14.68 16 6 N -0.43 -10.24 2.18 -116.10 -0.25 -10.49 16 7 C -0.30 -8.00 9.38 -14.94 -0.14 -8.14 16 8 H 0.11 3.04 7.37 -52.48 -0.39 2.66 16 9 C 0.03 0.74 4.94 -17.47 -0.09 0.66 16 10 N -0.88 -22.26 9.25 55.50 0.51 -21.75 16 11 Si 0.93 20.02 29.60 -169.99 -5.03 14.98 16 12 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 13 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 14 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 15 C 0.14 2.84 4.99 -5.20 -0.03 2.81 16 16 C 0.49 10.17 5.93 36.01 0.21 10.38 16 17 O -0.50 -12.24 15.37 -18.75 -0.29 -12.53 16 18 O -0.53 -8.91 13.42 -39.27 -0.53 -9.44 16 19 C -0.14 -2.32 5.00 -36.01 -0.18 -2.50 16 20 C -0.15 -2.09 10.01 -41.20 -0.41 -2.51 16 21 C -0.12 -1.60 10.13 -41.15 -0.42 -2.01 16 22 C -0.18 -2.63 7.10 29.07 0.21 -2.42 16 23 Cl -0.03 -0.41 29.29 -51.86 -1.52 -1.93 16 24 S 0.22 3.70 21.78 -107.50 -2.34 1.36 16 25 H 0.06 1.12 8.05 -51.93 -0.42 0.70 16 26 H 0.07 1.34 5.70 -51.93 -0.30 1.05 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 29 H 0.14 2.94 6.14 -51.93 -0.32 2.62 16 30 H 0.08 1.28 5.86 -51.93 -0.30 0.97 16 31 H 0.39 4.95 9.10 45.56 0.41 5.37 16 32 H 0.14 1.66 8.06 -52.49 -0.42 1.23 16 33 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 313.15 15.07 4.72 4.72 Total: -1.00 -31.33 313.15 -7.47 -38.79 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -2.00 Total: 7.09 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -0.82 Total: 3.86 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: 0.26 Total: -32.24 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -0.73 Total: -36.64 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.03 Total: 14.98 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -2.34 Total: 1.36 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.52 Total: -1.93 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.33 -7.47 -38.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825972504.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.222 kcal (2) G-P(sol) polarization free energy of solvation -31.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds