Wall clock time and date at job start Tue Mar 31 2020 10:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46633 * 2 1 4 4 C 1.50695 * 109.47102 * 240.00262 * 2 1 3 5 5 O 1.21291 * 119.99815 * 259.53671 * 4 2 1 6 6 N 1.34774 * 120.00080 * 79.53765 * 4 2 1 7 7 C 1.37096 * 120.00218 * 2.97742 * 6 4 2 8 8 H 1.07995 * 119.99553 * 13.67929 * 7 6 4 9 9 C 1.38947 * 119.99985 * 193.68556 * 7 6 4 10 10 N 1.31415 * 120.00091 * 27.13221 * 9 7 6 11 11 Si 1.86803 * 119.99902 * 207.13943 * 9 7 6 12 12 H 1.48500 * 109.47362 * 94.97776 * 11 9 7 13 13 H 1.48508 * 109.47012 * 214.97867 * 11 9 7 14 14 H 1.48502 * 109.46798 * 334.97535 * 11 9 7 15 15 C 1.46509 * 119.99790 * 182.97550 * 6 4 2 16 16 C 1.50701 * 109.46861 * 84.18360 * 15 6 4 17 17 O 1.20828 * 120.00134 * 359.97438 * 16 15 6 18 18 O 1.34229 * 119.99745 * 180.02562 * 16 15 6 19 19 C 1.50700 * 109.47168 * 119.99878 * 2 1 3 20 20 C 1.33340 * 125.18982 * 239.72373 * 19 2 1 21 21 C 1.38473 * 114.92908 * 179.79568 * 20 19 2 22 22 C 1.33504 * 114.88712 * 0.49520 * 21 20 19 23 23 Cl 1.73593 * 125.21483 * 179.71592 * 22 21 20 24 24 S 1.75883 * 109.57815 * 359.73369 * 22 21 20 25 25 H 1.09000 * 109.47414 * 54.69672 * 1 2 3 26 26 H 1.09002 * 109.47239 * 174.69801 * 1 2 3 27 27 H 1.09006 * 109.47494 * 294.69656 * 1 2 3 28 28 H 0.97008 * 119.99552 * 179.97438 * 10 9 7 29 29 H 1.08994 * 109.47140 * 204.18225 * 15 6 4 30 30 H 1.08998 * 109.46940 * 324.18859 * 15 6 4 31 31 H 0.96705 * 117.00014 * 180.02562 * 18 16 15 32 32 H 1.08004 * 122.53613 * 359.96964 * 20 19 2 33 33 H 1.08009 * 122.55913 * 180.22868 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.4143 -1.8590 -1.1541 6 7 2.0571 -0.0693 -2.4157 7 6 1.6831 1.2476 -2.4908 8 1 1.5825 1.8325 -1.5886 9 6 1.4335 1.8294 -3.7277 10 7 1.0307 1.0865 -4.7341 11 14 1.6706 3.6677 -3.9600 12 1 3.0262 3.9267 -4.5081 13 1 0.6477 4.1832 -4.9052 14 1 1.5261 4.3546 -2.6514 15 6 2.4838 -0.7797 -3.6239 16 6 1.3150 -1.5359 -4.2011 17 8 0.2364 -1.4869 -3.6587 18 8 1.4724 -2.2647 -5.3173 19 6 2.0323 -0.7104 1.2305 20 6 2.8065 -0.1660 2.1698 21 6 3.1398 -1.0122 3.2140 22 6 2.6437 -2.2478 3.1161 23 17 2.8983 -3.5227 4.2664 24 16 1.6930 -2.3862 1.6428 25 1 -0.3634 0.5939 -0.8387 26 1 -0.3634 -1.0233 -0.0950 27 1 -0.3634 0.4294 0.9337 28 1 0.8561 1.4928 -5.5974 29 1 2.8498 -0.0615 -4.3575 30 1 3.2804 -1.4795 -3.3716 31 1 0.6938 -2.7319 -5.6500 32 1 3.1455 0.8583 2.1214 33 1 3.7577 -0.6980 4.0423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825972505.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:56 Heat of formation + Delta-G solvation = -87.848655 kcal Electronic energy + Delta-G solvation = -22371.354761 eV Core-core repulsion = 18743.446376 eV Total energy + Delta-G solvation = -3627.908386 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.032 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -39.57159 -38.53035 -37.54527 -36.40762 -35.25591 -34.62161 -33.16820 -31.69757 -28.40048 -27.63598 -25.06466 -24.14590 -22.70593 -20.85955 -19.33950 -19.20098 -17.73380 -17.04346 -16.39797 -16.27144 -15.58103 -15.35162 -14.51972 -14.46134 -14.42158 -13.85536 -13.48944 -13.16447 -13.02393 -12.89970 -12.42325 -12.08934 -11.90063 -11.61712 -11.51677 -11.28744 -11.20297 -11.05489 -10.98044 -10.79054 -10.53814 -10.44199 -10.32028 -10.18589 -9.68608 -9.12979 -8.78393 -8.21296 -8.11444 -8.01325 -6.65026 -4.07339 1.13676 1.44889 2.26832 2.50305 2.88184 3.00192 3.13492 3.15576 3.48907 3.60023 3.93416 4.20834 4.54118 4.86070 5.07282 5.50902 5.60803 5.73711 5.77142 5.91906 6.15342 6.16194 6.31488 6.41123 6.42810 6.48409 6.54076 6.66771 6.80093 7.25634 7.41180 7.55262 8.09748 8.85817 9.08586 9.23414 9.63148 10.42520 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.019096 B = 0.004304 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.896983 B = 6503.951106 C = 7490.575935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.028 4.028 3 H 0.109 0.891 4 C 0.472 3.528 5 O -0.592 6.592 6 N -0.422 5.422 7 C -0.344 4.344 8 H 0.108 0.892 9 C 0.041 3.959 10 N -0.858 5.858 11 Si 0.920 3.080 12 H -0.276 1.276 13 H -0.284 1.284 14 H -0.267 1.267 15 C 0.154 3.846 16 C 0.496 3.504 17 O -0.506 6.506 18 O -0.535 6.535 19 C -0.130 4.130 20 C -0.152 4.152 21 C -0.117 4.117 22 C -0.180 4.180 23 Cl -0.034 7.034 24 S 0.211 5.789 25 H 0.083 0.917 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.273 0.727 29 H 0.122 0.878 30 H 0.086 0.914 31 H 0.391 0.609 32 H 0.144 0.856 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.124 -1.501 8.162 8.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.051 4.051 3 H 0.127 0.873 4 C 0.260 3.740 5 O -0.478 6.478 6 N -0.140 5.140 7 C -0.471 4.471 8 H 0.125 0.875 9 C -0.165 4.165 10 N -0.495 5.495 11 Si 0.746 3.254 12 H -0.201 1.201 13 H -0.210 1.210 14 H -0.192 1.192 15 C 0.028 3.972 16 C 0.337 3.663 17 O -0.392 6.392 18 O -0.346 6.346 19 C -0.249 4.249 20 C -0.182 4.182 21 C -0.151 4.151 22 C -0.324 4.324 23 Cl -0.006 7.006 24 S 0.476 5.524 25 H 0.102 0.898 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.139 0.861 30 H 0.104 0.896 31 H 0.248 0.752 32 H 0.161 0.839 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.489 -3.107 7.719 8.453 hybrid contribution 0.306 1.791 0.149 1.823 sum 1.795 -1.316 7.868 8.177 Atomic orbital electron populations 1.21674 0.91937 1.02807 1.02632 1.19692 0.97576 0.99505 0.88324 0.87319 1.19835 0.82753 0.86367 0.85058 1.90571 1.53249 1.17903 1.86032 1.43357 1.56366 1.10395 1.03856 1.19641 1.48557 0.83969 0.94893 0.87451 1.25184 0.95159 1.00427 0.95713 1.69965 1.38752 1.37282 1.03478 0.86030 0.78303 0.82391 0.78711 1.20141 1.21008 1.19180 1.20439 0.91779 0.95803 0.89152 1.23713 0.91214 0.74690 0.76728 1.90564 1.28135 1.59921 1.60567 1.84522 1.44622 1.61462 1.43980 1.24434 1.03194 0.97053 1.00217 1.19847 1.02047 1.01643 0.94677 1.19999 1.02692 0.91585 1.00804 1.25465 1.12656 0.94394 0.99895 1.98320 1.95750 1.49155 1.57362 1.84643 1.47620 1.09941 1.10199 0.89787 0.92739 0.92476 0.91603 0.86065 0.89646 0.75239 0.83881 0.84239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 9.00 37.16 0.33 -2.05 16 2 C -0.03 -0.53 2.30 -92.93 -0.21 -0.74 16 3 H 0.11 1.92 6.44 -51.93 -0.33 1.58 16 4 C 0.47 10.75 6.59 -10.99 -0.07 10.67 16 5 O -0.59 -14.59 14.67 5.55 0.08 -14.51 16 6 N -0.42 -9.91 2.18 -116.10 -0.25 -10.16 16 7 C -0.34 -7.97 8.37 -14.93 -0.13 -8.09 16 8 H 0.11 2.32 6.04 -52.49 -0.32 2.00 16 9 C 0.04 0.96 4.75 -17.47 -0.08 0.88 16 10 N -0.86 -21.01 9.60 55.50 0.53 -20.47 16 11 Si 0.92 18.06 29.63 -169.99 -5.04 13.02 16 12 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 13 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 14 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 15 C 0.15 3.51 5.17 -5.19 -0.03 3.48 16 16 C 0.50 11.58 6.59 36.01 0.24 11.81 16 17 O -0.51 -13.37 16.85 -18.75 -0.32 -13.68 16 18 O -0.53 -10.34 13.42 -39.25 -0.53 -10.87 16 19 C -0.13 -2.26 4.81 -36.02 -0.17 -2.44 16 20 C -0.15 -2.30 10.01 -41.21 -0.41 -2.71 16 21 C -0.12 -1.67 10.13 -41.15 -0.42 -2.08 16 22 C -0.18 -2.73 7.10 29.08 0.21 -2.53 16 23 Cl -0.03 -0.45 29.29 -51.86 -1.52 -1.97 16 24 S 0.21 3.64 21.88 -107.50 -2.35 1.29 16 25 H 0.08 1.65 7.43 -51.93 -0.39 1.26 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 29 H 0.12 2.75 6.34 -51.93 -0.33 2.42 16 30 H 0.09 1.84 7.56 -51.93 -0.39 1.45 16 31 H 0.39 5.85 9.10 45.56 0.41 6.26 16 32 H 0.14 1.84 8.06 -52.48 -0.42 1.41 16 33 H 0.14 1.62 8.06 -52.48 -0.42 1.20 16 LS Contribution 317.28 15.07 4.78 4.78 Total: -1.00 -29.20 317.28 -7.52 -36.72 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -2.17 Total: 9.66 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -0.75 Total: 6.20 kcal Atomic # 7 Polarization: -30.91 SS G_CDS: 0.28 Total: -30.63 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -0.76 Total: -39.06 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.04 Total: 13.02 kcal Atomic # 16 Polarization: 3.64 SS G_CDS: -2.35 Total: 1.29 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.52 Total: -1.97 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.20 -7.52 -36.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825972505.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.129 kcal (2) G-P(sol) polarization free energy of solvation -29.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds