Wall clock time and date at job start Tue Mar 31 2020 11:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 110.99609 * 2 1 4 4 C 1.50703 * 109.47180 * 66.04470 * 3 2 1 5 5 H 1.08002 * 119.99997 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99804 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00068 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99724 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47076 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.47104 * 120.00399 * 8 6 4 11 11 H 1.48502 * 109.46809 * 240.00502 * 8 6 4 12 12 C 1.46903 * 110.99922 * 236.04828 * 2 1 3 13 13 H 1.08995 * 109.47028 * 62.96655 * 12 2 1 14 14 C 1.50692 * 109.46938 * 302.96374 * 12 2 1 15 15 O 1.20823 * 120.00293 * 331.86637 * 14 12 2 16 16 O 1.34234 * 119.99844 * 151.87334 * 14 12 2 17 17 C 1.50699 * 109.46745 * 182.96547 * 12 2 1 18 18 C 1.38218 * 119.98989 * 43.13422 * 17 12 2 19 19 C 1.38365 * 120.01707 * 179.97438 * 18 17 12 20 20 Cl 1.73593 * 120.00885 * 180.27908 * 19 18 17 21 21 C 1.38328 * 119.98236 * 0.02562 * 19 18 17 22 22 C 1.38336 * 119.97709 * 359.97438 * 21 19 18 23 23 Cl 1.73598 * 120.00650 * 180.02562 * 22 21 19 24 24 C 1.38221 * 119.98457 * 223.11536 * 17 12 2 25 25 H 1.09005 * 109.47019 * 178.47701 * 1 2 3 26 26 H 1.08993 * 109.47496 * 298.48058 * 1 2 3 27 27 H 1.09003 * 109.47521 * 58.48719 * 1 2 3 28 28 H 1.09001 * 109.47031 * 186.04700 * 3 2 1 29 29 H 1.09005 * 109.47508 * 306.04488 * 3 2 1 30 30 H 0.97004 * 119.99872 * 179.97438 * 7 6 4 31 31 H 0.96701 * 116.99806 * 180.02562 * 16 14 12 32 32 H 1.08001 * 119.99124 * 359.97438 * 18 17 12 33 33 H 1.08000 * 120.01382 * 179.97438 * 21 19 18 34 34 H 1.07997 * 119.99623 * 0.02562 * 24 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6367 2.0472 1.2984 5 1 1.0745 1.5112 2.0488 6 6 2.0274 3.3492 1.5289 7 7 2.7125 4.0016 0.6153 8 14 1.5835 4.1866 3.1387 9 1 0.8163 3.2439 3.9918 10 1 2.8254 4.5932 3.8439 11 1 0.7564 5.3880 2.8600 12 6 1.9954 -0.7660 -1.1376 13 1 1.6896 -0.2896 -2.0690 14 6 1.4537 -2.1714 -1.0907 15 8 1.1550 -2.6686 -0.0308 16 8 1.3031 -2.8709 -2.2264 17 6 3.5001 -0.8048 -1.0637 18 6 4.1267 -1.0340 0.1468 19 6 5.5081 -1.0703 0.2152 20 17 6.2947 -1.3653 1.7343 21 6 6.2622 -0.8767 -0.9282 22 6 5.6346 -0.6473 -2.1395 23 17 6.5802 -0.4049 -3.5750 24 6 4.2531 -0.6116 -2.2066 25 1 -0.3633 -1.0274 -0.0273 26 1 -0.3634 0.4900 0.9032 27 1 -0.3634 0.5371 -0.8761 28 1 3.0796 1.3445 -0.1083 29 1 1.5610 1.9274 -0.8309 30 1 2.9871 4.9178 0.7773 31 1 0.9517 -3.7682 -2.1459 32 1 3.5378 -1.1847 1.0395 33 1 7.3405 -0.9045 -0.8753 34 1 3.7630 -0.4325 -3.1522 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830722646.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:37 Heat of formation + Delta-G solvation = -86.515222 kcal Electronic energy + Delta-G solvation = -22235.240676 eV Core-core repulsion = 18605.346405 eV Total energy + Delta-G solvation = -3629.894270 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.83114 -40.38006 -38.33836 -37.76773 -37.22417 -36.91301 -34.75020 -32.98301 -31.71075 -29.82965 -28.43393 -26.42009 -23.97568 -23.79945 -23.28670 -21.20225 -19.22442 -18.64966 -18.48884 -17.50446 -17.11482 -17.00387 -16.57432 -16.36429 -15.83522 -15.38387 -15.27784 -14.95096 -14.82102 -14.10879 -13.96147 -13.64432 -13.35198 -13.27813 -12.96039 -12.87088 -12.82052 -12.62174 -12.58168 -12.26847 -12.21971 -12.02187 -11.99415 -11.95557 -11.52364 -11.26125 -10.59870 -9.93710 -9.75851 -9.19725 -8.18565 -6.26197 -0.12642 -0.05468 0.74201 1.12927 1.22051 1.41103 1.43527 1.55175 1.86636 2.32174 2.44117 3.13417 3.19181 3.36189 3.86304 3.93584 3.98190 4.13631 4.26034 4.30630 4.36375 4.48976 4.61393 4.90354 4.98561 5.04769 5.14713 5.22351 5.26838 5.41437 5.56084 5.64995 5.99913 6.14723 6.44051 6.86927 7.00556 7.42301 8.92211 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.009685 B = 0.005531 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.317642 B = 5061.487333 C = 6017.438788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.528 5.528 3 C 0.214 3.786 4 C -0.520 4.520 5 H 0.060 0.940 6 C 0.011 3.989 7 N -0.926 5.926 8 Si 0.959 3.041 9 H -0.266 1.266 10 H -0.282 1.282 11 H -0.278 1.278 12 C 0.131 3.869 13 H 0.090 0.910 14 C 0.498 3.502 15 O -0.516 6.516 16 O -0.504 6.504 17 C -0.064 4.064 18 C -0.072 4.072 19 C -0.035 4.035 20 Cl -0.056 7.056 21 C -0.094 4.094 22 C -0.029 4.029 23 Cl -0.044 7.044 24 C -0.087 4.087 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.025 0.975 28 H 0.021 0.979 29 H -0.027 1.027 30 H 0.263 0.737 31 H 0.430 0.570 32 H 0.131 0.869 33 H 0.164 0.836 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.438 -12.665 -8.168 15.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.254 5.254 3 C 0.089 3.911 4 C -0.558 4.558 5 H 0.078 0.922 6 C -0.188 4.188 7 N -0.567 5.567 8 Si 0.784 3.216 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.204 1.204 12 C 0.021 3.979 13 H 0.108 0.892 14 C 0.339 3.661 15 O -0.404 6.404 16 O -0.317 6.317 17 C -0.066 4.066 18 C -0.091 4.091 19 C -0.062 4.062 20 Cl -0.027 7.027 21 C -0.113 4.113 22 C -0.056 4.056 23 Cl -0.015 7.015 24 C -0.106 4.106 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.044 0.956 28 H 0.039 0.961 29 H -0.010 1.010 30 H 0.072 0.928 31 H 0.293 0.707 32 H 0.149 0.851 33 H 0.182 0.818 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.882 -12.501 -7.512 15.380 hybrid contribution -0.557 0.627 0.290 0.888 sum 4.325 -11.874 -7.222 14.555 Atomic orbital electron populations 1.22297 0.86649 1.00877 1.01388 1.61947 1.08731 1.16244 1.38475 1.19442 0.94755 0.81519 0.95364 1.21390 1.34863 0.97307 1.02263 0.92176 1.25718 0.95076 0.97973 1.00054 1.70060 1.39098 1.11799 1.35714 0.85487 0.77978 0.78359 0.79745 1.19065 1.20747 1.20420 1.19984 0.91476 0.89608 0.96789 0.89246 1.22829 0.73891 0.87919 0.81478 1.90708 1.46747 1.70514 1.32433 1.84477 1.78153 1.33812 1.35291 1.19116 0.93054 1.01263 0.93124 1.21071 0.92770 0.96417 0.98878 1.20735 0.92398 1.05045 0.88013 1.98366 1.80084 1.94258 1.29956 1.21096 1.01750 0.99335 0.89136 1.20586 0.91646 1.04628 0.88697 1.98373 1.71783 1.95190 1.36186 1.21172 0.91954 0.98186 0.99324 0.91431 0.91368 0.95621 0.96065 1.00977 0.92773 0.70726 0.85068 0.81844 0.82200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.34 8.99 127.69 1.15 2.49 16 2 N -0.53 -21.72 3.77 -910.51 -3.43 -25.15 16 3 C 0.21 10.65 4.43 85.56 0.38 11.03 16 4 C -0.52 -28.36 8.54 25.60 0.22 -28.15 16 5 H 0.06 3.29 7.10 -2.91 -0.02 3.27 16 6 C 0.01 0.58 5.46 84.66 0.46 1.05 16 7 N -0.93 -53.74 13.29 21.45 0.28 -53.46 16 8 Si 0.96 43.75 29.54 68.60 2.03 45.78 16 9 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 12 C 0.13 4.38 2.18 43.42 0.09 4.48 16 13 H 0.09 2.74 7.97 -2.39 -0.02 2.72 16 14 C 0.50 14.71 6.34 71.23 0.45 15.16 16 15 O -0.52 -18.14 16.15 21.97 0.35 -17.79 16 16 O -0.50 -10.35 13.42 -51.45 -0.69 -11.04 16 17 C -0.06 -2.11 3.51 -19.87 -0.07 -2.18 16 18 C -0.07 -2.53 8.39 22.30 0.19 -2.34 16 19 C -0.03 -1.08 6.32 22.32 0.14 -0.94 16 20 Cl -0.06 -1.61 28.96 -2.72 -0.08 -1.69 16 21 C -0.09 -2.51 9.62 22.31 0.21 -2.29 16 22 C -0.03 -0.75 6.32 22.32 0.14 -0.61 16 23 Cl -0.04 -0.99 28.96 -2.72 -0.08 -1.06 16 24 C -0.09 -2.43 9.45 22.30 0.21 -2.22 16 25 H 0.07 2.30 6.04 -2.38 -0.01 2.29 16 26 H 0.07 2.77 6.90 -2.39 -0.02 2.75 16 27 H 0.03 0.91 8.13 -2.39 -0.02 0.89 16 28 H 0.02 1.13 6.31 -2.39 -0.02 1.12 16 29 H -0.03 -1.47 8.11 -2.38 -0.02 -1.48 16 30 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 31 H 0.43 4.64 9.10 -74.06 -0.67 3.96 16 32 H 0.13 5.18 7.82 -2.91 -0.02 5.16 16 33 H 0.16 3.54 8.06 -2.91 -0.02 3.51 16 34 H 0.16 3.70 8.01 -2.91 -0.02 3.68 16 Total: -1.00 -64.59 326.80 2.45 -62.14 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: 0.48 Total: 6.79 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 3.58 Total: -4.52 kcal Atomic # 7 Polarization: -75.47 SS G_CDS: -3.14 Total: -78.61 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.34 Total: -28.82 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 17 Polarization: -2.60 SS G_CDS: -0.16 Total: -2.76 kcal Total: -64.59 2.45 -62.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830722646.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.372 kcal (2) G-P(sol) polarization free energy of solvation -64.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds