Wall clock time and date at job start Tue Mar 31 2020 11:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46905 * 110.99777 * 2 1 4 4 C 1.50696 * 109.46531 * 66.05345 * 3 2 1 5 5 H 1.08002 * 120.00357 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99672 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00156 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00162 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47347 * 59.99476 * 8 6 4 10 10 H 1.48494 * 109.47325 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46603 * 299.99544 * 8 6 4 12 12 C 1.46905 * 110.99586 * 236.05183 * 2 1 3 13 13 H 1.09005 * 109.47461 * 63.95367 * 12 2 1 14 14 C 1.50696 * 109.46823 * 183.95343 * 12 2 1 15 15 O 1.20828 * 120.00365 * 359.97438 * 14 12 2 16 16 O 1.34233 * 120.00235 * 180.02562 * 14 12 2 17 17 C 1.50694 * 109.47243 * 303.95078 * 12 2 1 18 18 C 1.38244 * 119.99348 * 340.00613 * 17 12 2 19 19 C 1.38198 * 120.02645 * 179.97438 * 18 17 12 20 20 C 1.38380 * 120.01507 * 0.02562 * 19 18 17 21 21 Cl 1.73603 * 120.01071 * 180.02562 * 20 19 18 22 22 C 1.38315 * 119.98694 * 0.02562 * 20 19 18 23 23 C 1.38336 * 119.99530 * 160.04307 * 17 12 2 24 24 Cl 1.73607 * 120.00658 * 0.02562 * 23 17 12 25 25 H 1.08996 * 109.46729 * 183.94726 * 1 2 3 26 26 H 1.09004 * 109.46828 * 303.95075 * 1 2 3 27 27 H 1.09000 * 109.47109 * 63.94820 * 1 2 3 28 28 H 1.09000 * 109.46411 * 186.04827 * 3 2 1 29 29 H 1.08994 * 109.47289 * 306.04858 * 3 2 1 30 30 H 0.96998 * 119.99840 * 180.02562 * 7 6 4 31 31 H 0.96695 * 117.00592 * 179.97438 * 16 14 12 32 32 H 1.08000 * 119.98475 * 0.02562 * 18 17 12 33 33 H 1.08002 * 119.99688 * 180.02562 * 19 18 17 34 34 H 1.07996 * 120.01293 * 179.73135 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0470 1.2985 5 1 1.0741 1.5112 2.0486 6 6 2.0277 3.3490 1.5291 7 7 2.7137 4.0012 0.6159 8 14 1.5829 4.1867 3.1384 9 1 2.1736 3.4290 4.2707 10 1 2.1161 5.5726 3.1390 11 1 0.1056 4.2241 3.2849 12 6 1.9954 -0.7659 -1.1377 13 1 1.7044 -0.2797 -2.0689 14 6 3.4987 -0.8254 -1.0507 15 8 4.0728 -0.2849 -0.1352 16 8 4.2002 -1.4781 -1.9908 17 6 1.4347 -2.1642 -1.1045 18 6 0.9189 -2.6741 0.0724 19 6 0.4039 -3.9562 0.1036 20 6 0.4048 -4.7306 -1.0433 21 17 -0.2427 -6.3409 -1.0042 22 6 0.9217 -4.2214 -2.2208 23 6 1.4368 -2.9376 -2.2514 24 17 2.0860 -2.2977 -3.7289 25 1 -0.3632 -1.0252 0.0707 26 1 -0.3633 0.5740 0.8525 27 1 -0.3633 0.4513 -0.9232 28 1 3.0798 1.3444 -0.1083 29 1 1.5611 1.9274 -0.8308 30 1 2.9888 4.9171 0.7783 31 1 5.1621 -1.4886 -1.8927 32 1 0.9176 -2.0700 0.9677 33 1 0.0007 -4.3540 1.0232 34 1 0.9265 -4.8269 -3.1151 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830723550.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:40 Heat of formation + Delta-G solvation = -72.660190 kcal Electronic energy + Delta-G solvation = -22300.466935 eV Core-core repulsion = 18671.173464 eV Total energy + Delta-G solvation = -3629.293471 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.84582 -40.39673 -38.33295 -37.73265 -37.21335 -36.79422 -34.82191 -32.72227 -32.03671 -29.21028 -29.09509 -25.99211 -24.12962 -23.81820 -23.03565 -21.31593 -19.11577 -18.75721 -18.28657 -17.80192 -17.33923 -16.97108 -16.49916 -16.05940 -15.56419 -15.42106 -14.99245 -14.95178 -14.91103 -14.24325 -13.92985 -13.70547 -13.28259 -13.22566 -13.12606 -12.82971 -12.74245 -12.66288 -12.46539 -12.24452 -12.05141 -11.99511 -11.92681 -11.83033 -11.40240 -11.12709 -10.50739 -9.92370 -9.69466 -9.22181 -8.17060 -6.24845 -0.20181 0.04682 0.80628 1.17645 1.30448 1.41848 1.46235 1.53170 1.93219 2.36793 2.44668 3.08368 3.17481 3.37793 3.72640 3.95360 4.01272 4.20698 4.26482 4.40002 4.49735 4.65996 4.76056 4.80160 5.03740 5.04843 5.14328 5.23699 5.32538 5.50764 5.63589 5.66968 6.05201 6.20895 6.44105 6.87861 7.07259 7.42269 8.94955 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.017850 B = 0.004122 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.269245 B = 6791.235389 C = 7767.692425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.525 5.525 3 C 0.194 3.806 4 C -0.515 4.515 5 H 0.067 0.933 6 C -0.001 4.001 7 N -0.938 5.938 8 Si 0.969 3.031 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.262 1.262 12 C 0.132 3.868 13 H 0.080 0.920 14 C 0.485 3.515 15 O -0.516 6.516 16 O -0.497 6.497 17 C -0.082 4.082 18 C -0.071 4.071 19 C -0.103 4.103 20 C -0.019 4.019 21 Cl -0.049 7.049 22 C -0.103 4.103 23 C -0.011 4.011 24 Cl -0.044 7.044 25 H 0.093 0.907 26 H 0.072 0.928 27 H 0.015 0.985 28 H 0.032 0.968 29 H -0.041 1.041 30 H 0.262 0.738 31 H 0.423 0.577 32 H 0.152 0.848 33 H 0.164 0.836 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.964 -20.217 -6.814 21.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.250 5.250 3 C 0.068 3.932 4 C -0.554 4.554 5 H 0.086 0.914 6 C -0.199 4.199 7 N -0.578 5.578 8 Si 0.794 3.206 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.187 1.187 12 C 0.022 3.978 13 H 0.098 0.902 14 C 0.326 3.674 15 O -0.404 6.404 16 O -0.310 6.310 17 C -0.083 4.083 18 C -0.090 4.090 19 C -0.122 4.122 20 C -0.046 4.046 21 Cl -0.020 7.020 22 C -0.122 4.122 23 C -0.038 4.038 24 Cl -0.015 7.015 25 H 0.111 0.889 26 H 0.090 0.910 27 H 0.034 0.966 28 H 0.050 0.950 29 H -0.024 1.024 30 H 0.071 0.929 31 H 0.284 0.716 32 H 0.169 0.831 33 H 0.182 0.818 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -4.980 -20.213 -6.352 21.765 hybrid contribution 0.589 1.417 -0.257 1.556 sum -4.390 -18.796 -6.609 20.402 Atomic orbital electron populations 1.22566 0.85767 1.02614 1.00882 1.61899 1.08848 1.16083 1.38181 1.19729 0.95981 0.82224 0.95233 1.21370 1.34520 0.97275 1.02187 0.91445 1.25906 0.95140 0.98182 1.00637 1.70097 1.39551 1.11819 1.36368 0.85435 0.78991 0.76998 0.79174 1.19612 1.21167 1.18712 1.19907 0.87748 0.93944 0.96175 0.90223 1.23064 0.90975 0.74407 0.78933 1.90774 1.72014 1.42517 1.35079 1.84556 1.27131 1.69462 1.49864 1.19292 1.01588 0.93523 0.93918 1.21259 0.95033 0.94950 0.97746 1.21378 0.99463 0.92714 0.98607 1.20876 1.00684 0.88101 0.94922 1.98390 1.84435 1.20429 1.98714 1.20979 0.98809 0.93483 0.98963 1.20620 1.00791 0.94464 0.87970 1.98394 1.84352 1.86302 1.32453 0.88920 0.90955 0.96594 0.94967 1.02366 0.92911 0.71585 0.83058 0.81803 0.81876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.03 8.51 127.69 1.09 2.11 16 2 N -0.52 -22.11 3.59 -910.48 -3.27 -25.38 16 3 C 0.19 10.49 4.32 85.55 0.37 10.86 16 4 C -0.52 -29.46 8.46 25.60 0.22 -29.25 16 5 H 0.07 3.69 7.12 -2.91 -0.02 3.67 16 6 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 7 N -0.94 -57.95 13.29 21.45 0.28 -57.66 16 8 Si 0.97 44.93 29.54 68.60 2.03 46.95 16 9 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 12 C 0.13 4.72 1.69 43.42 0.07 4.79 16 13 H 0.08 2.89 7.36 -2.38 -0.02 2.87 16 14 C 0.48 18.01 7.26 71.23 0.52 18.52 16 15 O -0.52 -24.13 14.64 21.96 0.32 -23.81 16 16 O -0.50 -13.51 11.17 -51.44 -0.57 -14.08 16 17 C -0.08 -2.28 4.44 -19.84 -0.09 -2.37 16 18 C -0.07 -1.79 7.25 22.26 0.16 -1.63 16 19 C -0.10 -1.99 9.83 22.29 0.22 -1.77 16 20 C -0.02 -0.35 6.32 22.32 0.14 -0.21 16 21 Cl -0.05 -0.77 28.96 -2.72 -0.08 -0.85 16 22 C -0.10 -1.99 9.62 22.32 0.21 -1.78 16 23 C -0.01 -0.26 6.14 22.32 0.14 -0.12 16 24 Cl -0.04 -1.05 25.57 -2.72 -0.07 -1.12 16 25 H 0.09 2.63 4.97 -2.39 -0.01 2.61 16 26 H 0.07 2.77 6.76 -2.38 -0.02 2.76 16 27 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.03 1.95 5.21 -2.39 -0.01 1.94 16 29 H -0.04 -2.41 8.12 -2.39 -0.02 -2.43 16 30 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 31 H 0.42 7.87 9.10 -74.06 -0.67 7.19 16 32 H 0.15 4.21 6.41 -2.91 -0.02 4.19 16 33 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 34 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -71.00 314.97 2.65 -68.36 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: 0.49 Total: 8.04 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 3.51 Total: -0.44 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -2.98 Total: -83.04 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -0.25 Total: -37.89 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -0.15 Total: -1.97 kcal Total: -71.00 2.65 -68.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830723550.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.304 kcal (2) G-P(sol) polarization free energy of solvation -71.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds