Wall clock time and date at job start Tue Mar 31 2020 12:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38207 * 119.98836 * 2 1 4 4 C 1.38442 * 119.97372 * 180.02562 * 3 2 1 5 5 F 1.35102 * 120.02731 * 180.02562 * 4 3 2 6 6 C 1.38479 * 119.94800 * 359.97438 * 4 3 2 7 7 C 1.38178 * 119.97393 * 0.02562 * 6 4 3 8 8 S 1.76204 * 119.98606 * 179.97438 * 7 6 4 9 9 O 1.42104 * 106.40097 * 23.56163 * 8 7 6 10 10 O 1.42094 * 106.40158 * 156.47673 * 8 7 6 11 11 N 1.65596 * 107.21905 * 270.01973 * 8 7 6 12 12 C 1.36935 * 119.99748 * 275.26534 * 11 8 7 13 13 H 1.08001 * 120.00224 * 326.62871 * 12 11 8 14 14 C 1.38818 * 120.00142 * 146.63267 * 12 11 8 15 15 N 1.31623 * 119.99839 * 335.80556 * 14 12 11 16 16 Si 1.86797 * 119.99823 * 155.80613 * 14 12 11 17 17 H 1.48508 * 109.47028 * 90.00320 * 16 14 12 18 18 H 1.48508 * 109.46876 * 209.99611 * 16 14 12 19 19 H 1.48490 * 109.47505 * 329.99922 * 16 14 12 20 20 C 1.46498 * 119.99895 * 95.25871 * 11 8 7 21 21 C 1.50705 * 109.46710 * 95.00541 * 20 11 8 22 22 O 1.20823 * 119.99892 * 359.97438 * 21 20 11 23 23 O 1.34233 * 119.99856 * 179.97438 * 21 20 11 24 24 C 1.38224 * 119.98200 * 180.02562 * 2 1 3 25 25 H 1.08994 * 109.47395 * 269.98493 * 1 2 3 26 26 H 1.09007 * 109.46609 * 29.98532 * 1 2 3 27 27 H 1.09005 * 109.47324 * 149.97713 * 1 2 3 28 28 H 1.08005 * 120.01830 * 0.04218 * 3 2 1 29 29 H 1.08001 * 120.00949 * 180.02562 * 6 4 3 30 30 H 0.96996 * 119.99606 * 179.97438 * 15 14 12 31 31 H 1.09005 * 109.47250 * 214.99975 * 20 11 8 32 32 H 1.08992 * 109.47548 * 334.99932 * 20 11 8 33 33 H 0.96690 * 116.99937 * 179.97438 * 23 21 20 34 34 H 1.07996 * 119.97787 * 0.26030 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1970 0.0000 4 6 3.5822 1.1967 -0.0005 5 9 4.2586 2.3662 0.0000 6 6 4.2732 -0.0034 -0.0005 7 6 3.5804 -1.1989 -0.0005 8 16 4.4593 -2.7261 -0.0012 9 8 5.7427 -2.4507 0.5433 10 8 3.5764 -3.6974 0.5430 11 7 4.7037 -3.1503 -1.5831 12 6 3.7294 -3.8247 -2.2695 13 1 3.0943 -4.5293 -1.7531 14 6 3.5578 -3.6026 -3.6290 15 7 3.9532 -2.4676 -4.1655 16 14 2.7659 -4.9147 -4.6970 17 1 1.2960 -4.7053 -4.7301 18 1 3.3098 -4.8252 -6.0760 19 1 3.0622 -6.2565 -4.1341 20 6 5.9622 -2.8041 -2.2483 21 6 6.9125 -3.9707 -2.1639 22 8 6.5734 -4.9868 -1.6050 23 8 8.1356 -3.8809 -2.7096 24 6 2.1978 -1.1973 -0.0005 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5137 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6579 2.1325 0.0007 29 1 5.3532 -0.0048 -0.0005 30 1 3.8337 -2.3126 -5.1155 31 1 5.7674 -2.5691 -3.2948 32 1 6.4060 -1.9377 -1.7580 33 1 8.7097 -4.6548 -2.6298 34 1 1.6571 -2.1322 -0.0052 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832888092.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:46 Heat of formation + Delta-G solvation = -178.448830 kcal Electronic energy + Delta-G solvation = -25190.878685 eV Core-core repulsion = 21130.705206 eV Total energy + Delta-G solvation = -4060.173479 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.63245 -39.45263 -38.73362 -36.10034 -36.04118 -35.08554 -34.61444 -32.55532 -31.87518 -30.34013 -27.87003 -26.88635 -24.48273 -22.87379 -21.57724 -21.09758 -18.72550 -17.70788 -17.41138 -17.12536 -16.56667 -16.22927 -15.87290 -15.70289 -15.35888 -15.07405 -14.92269 -14.87678 -14.35030 -13.53258 -13.47742 -13.21947 -13.07322 -12.64831 -12.10399 -12.00983 -11.84690 -11.78237 -11.62164 -11.34154 -11.28120 -11.20316 -10.92270 -10.88311 -10.84779 -10.66422 -10.44452 -9.96074 -9.90755 -9.47495 -8.88068 -8.33806 -8.18367 -6.82075 -4.34725 1.11094 1.48029 1.54095 2.97317 3.02692 3.08046 3.18675 3.57661 3.76075 3.89955 4.28828 4.46574 4.56158 4.85021 4.93736 5.09375 5.37757 5.42598 5.55769 5.64733 5.68255 5.80486 5.84049 5.98651 6.06399 6.31723 6.37044 6.46841 6.53548 6.61538 6.86859 7.11818 7.18138 7.18881 8.03503 8.43458 8.63736 8.89761 10.15596 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.012672 B = 0.006418 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.151166 B = 4361.536210 C = 5263.424176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.085 4.085 3 C -0.123 4.123 4 C 0.073 3.927 5 F -0.145 7.145 6 C -0.068 4.068 7 C -0.619 4.619 8 S 2.549 3.451 9 O -1.000 7.000 10 O -0.969 6.969 11 N -0.791 5.791 12 C -0.238 4.238 13 H 0.116 0.884 14 C 0.034 3.966 15 N -0.826 5.826 16 Si 0.925 3.075 17 H -0.269 1.269 18 H -0.277 1.277 19 H -0.261 1.261 20 C 0.132 3.868 21 C 0.462 3.538 22 O -0.506 6.506 23 O -0.526 6.526 24 C -0.028 4.028 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.132 0.868 29 H 0.142 0.858 30 H 0.280 0.720 31 H 0.149 0.851 32 H 0.102 0.898 33 H 0.398 0.602 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.949 4.727 0.004 5.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.086 4.086 3 C -0.142 4.142 4 C 0.054 3.946 5 F -0.123 7.123 6 C -0.088 4.088 7 C -0.697 4.697 8 S 2.649 3.351 9 O -0.989 6.989 10 O -0.959 6.959 11 N -0.614 5.614 12 C -0.386 4.386 13 H 0.133 0.867 14 C -0.179 4.179 15 N -0.464 5.464 16 Si 0.749 3.251 17 H -0.195 1.195 18 H -0.202 1.202 19 H -0.185 1.185 20 C 0.002 3.998 21 C 0.302 3.698 22 O -0.392 6.392 23 O -0.337 6.337 24 C -0.048 4.048 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.149 0.851 29 H 0.160 0.840 30 H 0.091 0.909 31 H 0.166 0.834 32 H 0.119 0.881 33 H 0.255 0.745 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.973 4.651 0.990 5.149 hybrid contribution -0.151 0.042 -0.782 0.798 sum -2.124 4.693 0.208 5.156 Atomic orbital electron populations 1.20787 0.90448 1.03218 1.02378 1.19855 0.96392 0.92459 0.99913 1.21037 0.92219 0.99020 1.01974 1.17729 0.90292 0.81245 1.05365 1.91465 1.80380 1.46181 1.94306 1.20778 1.00672 0.90132 0.97221 1.32191 1.06424 1.22321 1.08815 1.10440 0.73179 0.74108 0.77349 1.93358 1.40423 1.85726 1.79416 1.93386 1.66548 1.57626 1.78383 1.53227 1.16885 1.59658 1.31613 1.19853 1.13291 1.13848 0.91573 0.86666 1.25818 0.96606 0.96517 0.98956 1.69896 1.41202 1.20910 1.14423 0.85927 0.79378 0.81247 0.78547 1.19464 1.20212 1.18468 1.20790 0.81769 0.91450 1.05748 1.24697 0.80337 0.90743 0.74016 1.90654 1.75898 1.32133 1.40493 1.84566 1.27272 1.47202 1.74691 1.20853 0.92491 0.98325 0.93086 0.91065 0.91524 0.90762 0.85060 0.84048 0.90919 0.83392 0.88062 0.74515 0.84100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.01 36.01 0.36 -0.97 16 2 C -0.09 -1.37 5.88 -104.64 -0.62 -1.98 16 3 C -0.12 -1.94 9.68 -39.52 -0.38 -2.32 16 4 C 0.07 1.29 7.30 -39.42 -0.29 1.01 16 5 F -0.14 -2.44 17.27 2.25 0.04 -2.40 16 6 C -0.07 -1.32 9.50 -39.51 -0.38 -1.69 16 7 C -0.62 -12.80 5.97 -39.59 -0.24 -13.04 16 8 S 2.55 59.38 5.61 -107.50 -0.60 58.77 16 9 O -1.00 -24.39 16.08 -57.17 -0.92 -25.31 16 10 O -0.97 -24.57 16.28 -57.17 -0.93 -25.50 16 11 N -0.79 -18.40 2.37 -61.08 -0.14 -18.55 16 12 C -0.24 -5.66 9.05 -15.06 -0.14 -5.80 16 13 H 0.12 2.78 7.45 -52.49 -0.39 2.38 16 14 C 0.03 0.76 4.97 -17.43 -0.09 0.67 16 15 N -0.83 -18.50 11.30 55.49 0.63 -17.87 16 16 Si 0.92 17.86 29.62 -169.99 -5.03 12.82 16 17 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 18 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 19 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 20 C 0.13 2.79 5.57 -5.19 -0.03 2.76 16 21 C 0.46 9.63 8.37 36.01 0.30 9.93 16 22 O -0.51 -12.05 17.10 -18.75 -0.32 -12.37 16 23 O -0.53 -8.58 13.42 -39.27 -0.53 -9.10 16 24 C -0.03 -0.54 9.17 -39.58 -0.36 -0.90 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 27 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 28 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 29 H 0.14 2.59 7.62 -52.49 -0.40 2.19 16 30 H 0.28 5.85 8.31 -40.82 -0.34 5.51 16 31 H 0.15 3.15 5.32 -51.93 -0.28 2.87 16 32 H 0.10 1.94 7.46 -51.93 -0.39 1.55 16 33 H 0.40 4.56 9.10 45.56 0.41 4.97 16 34 H 0.14 2.58 7.62 -52.49 -0.40 2.18 16 LS Contribution 321.09 15.07 4.84 4.84 Total: -1.00 -30.34 321.09 -7.09 -37.42 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -2.26 Total: 9.59 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -1.85 Total: -12.34 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.48 Total: -36.42 kcal Atomic # 8 Polarization: -69.59 SS G_CDS: -2.70 Total: -72.29 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.04 Total: -2.40 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.82 kcal Atomic # 16 Polarization: 59.38 SS G_CDS: -0.60 Total: 58.77 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.34 -7.09 -37.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832888092.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.025 kcal (2) G-P(sol) polarization free energy of solvation -30.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds