Wall clock time and date at job start Tue Mar 31 2020 12:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38207 * 119.98836 * 2 1 4 4 C 1.38442 * 119.97372 * 180.02562 * 3 2 1 5 5 F 1.35102 * 120.02731 * 180.02562 * 4 3 2 6 6 C 1.38479 * 119.94800 * 359.97438 * 4 3 2 7 7 C 1.38178 * 119.97393 * 0.02562 * 6 4 3 8 8 S 1.76204 * 119.98606 * 179.97438 * 7 6 4 9 9 O 1.42104 * 106.40097 * 23.56163 * 8 7 6 10 10 O 1.42094 * 106.40158 * 156.47673 * 8 7 6 11 11 N 1.65596 * 107.21905 * 270.01973 * 8 7 6 12 12 C 1.36935 * 119.99748 * 275.26534 * 11 8 7 13 13 H 1.08001 * 120.00224 * 326.62871 * 12 11 8 14 14 C 1.38818 * 120.00142 * 146.63267 * 12 11 8 15 15 N 1.31623 * 119.99839 * 335.80556 * 14 12 11 16 16 Si 1.86797 * 119.99823 * 155.80613 * 14 12 11 17 17 H 1.48508 * 109.47028 * 90.00320 * 16 14 12 18 18 H 1.48508 * 109.46876 * 209.99611 * 16 14 12 19 19 H 1.48490 * 109.47505 * 329.99922 * 16 14 12 20 20 C 1.46498 * 119.99895 * 95.25871 * 11 8 7 21 21 C 1.50705 * 109.46710 * 95.00541 * 20 11 8 22 22 O 1.20823 * 119.99892 * 359.97438 * 21 20 11 23 23 O 1.34233 * 119.99856 * 179.97438 * 21 20 11 24 24 C 1.38224 * 119.98200 * 180.02562 * 2 1 3 25 25 H 1.08994 * 109.47395 * 269.98493 * 1 2 3 26 26 H 1.09007 * 109.46609 * 29.98532 * 1 2 3 27 27 H 1.09005 * 109.47324 * 149.97713 * 1 2 3 28 28 H 1.08005 * 120.01830 * 0.04218 * 3 2 1 29 29 H 1.08001 * 120.00949 * 180.02562 * 6 4 3 30 30 H 0.96996 * 119.99606 * 179.97438 * 15 14 12 31 31 H 1.09005 * 109.47250 * 214.99975 * 20 11 8 32 32 H 1.08992 * 109.47548 * 334.99932 * 20 11 8 33 33 H 0.96690 * 116.99937 * 179.97438 * 23 21 20 34 34 H 1.07996 * 119.97787 * 0.26030 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1970 0.0000 4 6 3.5822 1.1967 -0.0005 5 9 4.2586 2.3662 0.0000 6 6 4.2732 -0.0034 -0.0005 7 6 3.5804 -1.1989 -0.0005 8 16 4.4593 -2.7261 -0.0012 9 8 5.7427 -2.4507 0.5433 10 8 3.5764 -3.6974 0.5430 11 7 4.7037 -3.1503 -1.5831 12 6 3.7294 -3.8247 -2.2695 13 1 3.0943 -4.5293 -1.7531 14 6 3.5578 -3.6026 -3.6290 15 7 3.9532 -2.4676 -4.1655 16 14 2.7659 -4.9147 -4.6970 17 1 1.2960 -4.7053 -4.7301 18 1 3.3098 -4.8252 -6.0760 19 1 3.0622 -6.2565 -4.1341 20 6 5.9622 -2.8041 -2.2483 21 6 6.9125 -3.9707 -2.1639 22 8 6.5734 -4.9868 -1.6050 23 8 8.1356 -3.8809 -2.7096 24 6 2.1978 -1.1973 -0.0005 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5137 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6579 2.1325 0.0007 29 1 5.3532 -0.0048 -0.0005 30 1 3.8337 -2.3126 -5.1155 31 1 5.7674 -2.5691 -3.2948 32 1 6.4060 -1.9377 -1.7580 33 1 8.7097 -4.6548 -2.6298 34 1 1.6571 -2.1322 -0.0052 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832888092.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:46 Heat of formation + Delta-G solvation = -199.175895 kcal Electronic energy + Delta-G solvation = -25191.777478 eV Core-core repulsion = 21130.705206 eV Total energy + Delta-G solvation = -4061.072272 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.98691 -41.07543 -40.09651 -37.93248 -37.73134 -36.72206 -36.51693 -33.82901 -33.61378 -31.72961 -29.56761 -28.05202 -26.22676 -24.31938 -22.94107 -22.67720 -20.46509 -19.29824 -19.01840 -18.81469 -18.26843 -17.64854 -17.28012 -17.26944 -16.77255 -16.66687 -16.52876 -16.51790 -16.07369 -15.21716 -14.55335 -14.51345 -14.34973 -14.23864 -13.77606 -13.48912 -13.27002 -13.11944 -13.04372 -12.97955 -12.88055 -12.82281 -12.61245 -12.56475 -12.52370 -12.31765 -12.09084 -11.64123 -11.53485 -11.15869 -10.25180 -9.89909 -9.71333 -8.52576 -6.13459 -0.40380 -0.11852 0.08418 1.36185 1.44876 1.51866 1.64455 2.04051 2.31714 2.32495 2.61379 2.83013 3.07730 3.20157 3.52429 3.81334 3.87725 4.07632 4.17241 4.23909 4.34200 4.44944 4.64040 4.80806 4.81864 4.86817 4.97822 5.07004 5.16445 5.22913 5.33808 5.46479 5.70227 5.83198 6.27887 6.66808 7.10767 7.18298 8.46482 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.012672 B = 0.006418 C = 0.005318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.151166 B = 4361.536210 C = 5263.424176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.078 4.078 3 C -0.111 4.111 4 C 0.070 3.930 5 F -0.140 7.140 6 C -0.088 4.088 7 C -0.637 4.637 8 S 2.553 3.447 9 O -1.020 7.020 10 O -1.001 7.001 11 N -0.800 5.800 12 C -0.265 4.265 13 H 0.100 0.900 14 C 0.013 3.987 15 N -0.838 5.838 16 Si 0.976 3.024 17 H -0.260 1.260 18 H -0.265 1.265 19 H -0.273 1.273 20 C 0.125 3.875 21 C 0.467 3.533 22 O -0.543 6.543 23 O -0.509 6.509 24 C -0.049 4.049 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.173 0.827 29 H 0.140 0.860 30 H 0.289 0.711 31 H 0.150 0.850 32 H 0.115 0.885 33 H 0.422 0.578 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.195 6.340 -1.016 7.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.079 4.079 3 C -0.130 4.130 4 C 0.050 3.950 5 F -0.118 7.118 6 C -0.108 4.108 7 C -0.719 4.719 8 S 2.658 3.342 9 O -1.010 7.010 10 O -0.991 6.991 11 N -0.623 5.623 12 C -0.412 4.412 13 H 0.117 0.883 14 C -0.199 4.199 15 N -0.476 5.476 16 Si 0.798 3.202 17 H -0.184 1.184 18 H -0.190 1.190 19 H -0.198 1.198 20 C -0.004 4.004 21 C 0.308 3.692 22 O -0.432 6.432 23 O -0.322 6.322 24 C -0.068 4.068 25 H 0.110 0.890 26 H 0.111 0.889 27 H 0.093 0.907 28 H 0.191 0.809 29 H 0.158 0.842 30 H 0.099 0.901 31 H 0.167 0.833 32 H 0.133 0.867 33 H 0.283 0.717 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.164 6.247 -0.053 7.003 hybrid contribution 0.265 -0.338 -0.446 0.619 sum -2.899 5.909 -0.499 6.600 Atomic orbital electron populations 1.20917 0.87121 1.04617 1.04113 1.20301 0.98678 0.91255 0.97629 1.21499 0.91392 1.00591 0.99473 1.17826 0.91207 0.80747 1.05206 1.91477 1.80500 1.45619 1.94246 1.20835 1.00891 0.90661 0.98406 1.31678 1.07280 1.21296 1.11692 1.09900 0.72665 0.74428 0.77224 1.93311 1.41504 1.86199 1.79963 1.93329 1.67159 1.59462 1.79170 1.53110 1.17584 1.60257 1.31332 1.19839 1.14286 1.14640 0.92420 0.88272 1.26359 0.96700 0.97832 0.98995 1.69909 1.41056 1.21496 1.15098 0.85173 0.79203 0.78395 0.77391 1.18414 1.18973 1.19825 1.20936 0.81486 0.92272 1.05718 1.24581 0.81291 0.89928 0.73432 1.90642 1.76962 1.33325 1.42282 1.84489 1.25844 1.48507 1.73360 1.21041 0.92010 0.99748 0.94035 0.89003 0.88888 0.90665 0.80947 0.84187 0.90098 0.83321 0.86720 0.71691 0.84566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.25 10.01 71.24 0.71 -1.54 16 2 C -0.08 -2.30 5.88 -19.87 -0.12 -2.42 16 3 C -0.11 -3.12 9.68 22.31 0.22 -2.91 16 4 C 0.07 2.35 7.30 22.38 0.16 2.51 16 5 F -0.14 -4.44 17.27 44.97 0.78 -3.66 16 6 C -0.09 -3.41 9.50 22.31 0.21 -3.20 16 7 C -0.64 -26.82 5.97 22.26 0.13 -26.69 16 8 S 2.55 123.60 5.61 -56.49 -0.32 123.28 16 9 O -1.02 -51.56 16.08 -128.00 -2.06 -53.62 16 10 O -1.00 -53.19 16.28 -128.00 -2.08 -55.28 16 11 N -0.80 -38.30 2.37 -347.17 -0.82 -39.12 16 12 C -0.26 -12.93 9.05 84.04 0.76 -12.16 16 13 H 0.10 5.03 7.45 -2.91 -0.02 5.00 16 14 C 0.01 0.58 4.97 84.86 0.42 1.00 16 15 N -0.84 -37.06 11.30 21.65 0.24 -36.81 16 16 Si 0.98 36.09 29.62 68.60 2.03 38.12 16 17 H -0.26 -9.14 7.11 99.48 0.71 -8.44 16 18 H -0.27 -9.26 7.11 99.48 0.71 -8.55 16 19 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 20 C 0.12 5.36 5.57 85.63 0.48 5.84 16 21 C 0.47 19.51 8.37 71.24 0.60 20.10 16 22 O -0.54 -26.38 17.10 21.97 0.38 -26.01 16 23 O -0.51 -15.97 13.42 -51.45 -0.69 -16.66 16 24 C -0.05 -1.85 9.17 22.27 0.20 -1.64 16 25 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.09 1.43 8.09 -2.38 -0.02 1.41 16 27 H 0.07 1.54 8.09 -2.38 -0.02 1.52 16 28 H 0.17 3.42 8.06 -2.91 -0.02 3.40 16 29 H 0.14 5.27 7.62 -2.91 -0.02 5.25 16 30 H 0.29 11.69 8.31 -92.71 -0.77 10.91 16 31 H 0.15 6.36 5.32 -2.38 -0.01 6.34 16 32 H 0.12 4.49 7.46 -2.39 -0.02 4.47 16 33 H 0.42 8.93 9.10 -74.06 -0.67 8.25 16 34 H 0.14 5.13 7.62 -2.91 -0.02 5.11 16 Total: -1.00 -66.32 321.09 1.74 -64.58 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: 0.50 Total: 26.28 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: 3.78 Total: -21.11 kcal Atomic # 7 Polarization: -75.35 SS G_CDS: -0.58 Total: -75.93 kcal Atomic # 8 Polarization: -147.11 SS G_CDS: -4.46 Total: -151.56 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.78 Total: -3.66 kcal Atomic # 14 Polarization: 36.09 SS G_CDS: 2.03 Total: 38.12 kcal Atomic # 16 Polarization: 123.60 SS G_CDS: -0.32 Total: 123.28 kcal Total: -66.32 1.74 -64.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832888092.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.596 kcal (2) G-P(sol) polarization free energy of solvation -66.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds