Wall clock time and date at job start Tue Mar 31 2020 12:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38220 * 120.01305 * 2 1 4 4 C 1.38223 * 120.02783 * 180.02562 * 3 2 1 5 5 C 1.38271 * 120.04808 * 359.97438 * 4 3 2 6 6 C 1.38178 * 120.02432 * 359.79574 * 5 4 3 7 7 S 1.76204 * 120.01085 * 180.22649 * 6 5 4 8 8 O 1.42093 * 106.40127 * 228.77102 * 7 6 5 9 9 O 1.42100 * 106.40068 * 1.69188 * 7 6 5 10 10 N 1.65598 * 107.21763 * 115.22769 * 7 6 5 11 11 C 1.36940 * 119.99674 * 90.00252 * 10 7 6 12 12 H 1.08004 * 120.00065 * 327.40590 * 11 10 7 13 13 C 1.38805 * 120.00181 * 147.40416 * 11 10 7 14 14 N 1.31613 * 120.00290 * 335.38332 * 13 11 10 15 15 Si 1.86800 * 120.00025 * 155.38183 * 13 11 10 16 16 H 1.48498 * 109.47300 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47456 * 120.00405 * 15 13 11 18 18 H 1.48503 * 109.47150 * 240.00386 * 15 13 11 19 19 C 1.46497 * 120.00267 * 269.99866 * 10 7 6 20 20 C 1.50706 * 109.46935 * 95.68226 * 19 10 7 21 21 O 1.20827 * 119.99619 * 359.97438 * 20 19 10 22 22 O 1.34220 * 119.99989 * 180.02562 * 20 19 10 23 23 C 1.38438 * 120.01475 * 180.02562 * 2 1 3 24 24 F 1.35095 * 120.02369 * 359.95500 * 23 2 1 25 25 H 1.08996 * 109.47649 * 269.97893 * 1 2 3 26 26 H 1.09005 * 109.47283 * 29.97989 * 1 2 3 27 27 H 1.08999 * 109.47191 * 149.97595 * 1 2 3 28 28 H 1.08005 * 119.98609 * 0.04316 * 3 2 1 29 29 H 1.07993 * 119.97463 * 180.02562 * 4 3 2 30 30 H 1.08004 * 119.98271 * 180.02562 * 5 4 3 31 31 H 0.97000 * 120.00949 * 179.97438 * 14 13 11 32 32 H 1.09004 * 109.46727 * 215.67519 * 19 10 7 33 33 H 1.08995 * 109.47508 * 335.67720 * 19 10 7 34 34 H 0.96704 * 117.00375 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1969 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.2732 0.0005 -0.0005 6 6 3.5842 -1.1972 0.0043 7 16 4.4672 -2.7220 0.0103 8 8 3.8908 -3.5235 -1.0117 9 8 5.8474 -2.3861 0.0491 10 7 4.1296 -3.4783 1.4442 11 6 3.0616 -4.3307 1.5338 12 1 2.1749 -4.1493 0.9443 13 6 3.1185 -5.4279 2.3821 14 7 4.2833 -5.9390 2.7197 15 14 1.5417 -6.1791 3.0445 16 1 0.3752 -5.4250 2.5192 17 1 1.4497 -7.5972 2.6136 18 1 1.5465 -6.1119 4.5280 19 6 4.9734 -3.2356 2.6169 20 6 4.3516 -2.1592 3.4690 21 8 3.3107 -1.6471 3.1310 22 8 4.9547 -1.7688 4.6028 23 6 2.1995 -1.1987 -0.0005 24 9 1.5248 -2.3691 -0.0001 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6583 2.1322 0.0007 29 1 4.1199 2.1328 -0.0001 30 1 5.3533 0.0020 -0.0005 31 1 4.3232 -6.7056 3.3128 32 1 5.0607 -4.1537 3.1979 33 1 5.9634 -2.9155 2.2923 34 1 4.5182 -1.0749 5.1158 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833753687.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:18 Heat of formation + Delta-G solvation = -165.883001 kcal Electronic energy + Delta-G solvation = -26137.618282 eV Core-core repulsion = 22077.989698 eV Total energy + Delta-G solvation = -4059.628584 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -48.64832 -39.41678 -38.83437 -36.28492 -35.92482 -34.98946 -34.86534 -32.81910 -31.48357 -30.51635 -27.68023 -26.92154 -24.23805 -23.16683 -21.69254 -20.99516 -18.71354 -17.82912 -17.39799 -17.27886 -16.85127 -16.41429 -16.04396 -15.50441 -15.31278 -14.88484 -14.64064 -14.54865 -14.36564 -13.57909 -13.37573 -13.27768 -13.08380 -12.58954 -12.48123 -12.07066 -11.90226 -11.80141 -11.54533 -11.31478 -11.29436 -11.17951 -10.97111 -10.88099 -10.78325 -10.57411 -10.27612 -10.16040 -9.84477 -9.30848 -9.03282 -8.42921 -7.92511 -6.36917 -4.02926 0.93597 1.33896 1.35492 3.02469 3.18333 3.28070 3.35509 3.49206 3.63763 4.14234 4.35126 4.42632 4.51910 4.74909 4.87245 4.99660 5.16335 5.27755 5.35245 5.60489 5.66055 5.75983 5.96825 6.00628 6.07549 6.15586 6.21724 6.24860 6.39756 6.64785 6.98839 7.07714 7.17922 7.60617 8.31254 8.67157 8.86319 9.26835 10.67854 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.013684 B = 0.007357 C = 0.006763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.726965 B = 3804.868163 C = 4139.006706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.146 4.146 3 C -0.051 4.051 4 C -0.156 4.156 5 C -0.009 4.009 6 C -0.690 4.690 7 S 2.653 3.347 8 O -0.951 6.951 9 O -0.989 6.989 10 N -0.821 5.821 11 C -0.289 4.289 12 H 0.106 0.894 13 C 0.037 3.963 14 N -0.865 5.865 15 Si 0.915 3.085 16 H -0.266 1.266 17 H -0.280 1.280 18 H -0.281 1.281 19 C 0.119 3.881 20 C 0.450 3.550 21 O -0.507 6.507 22 O -0.527 6.527 23 C 0.218 3.782 24 F -0.109 7.109 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.145 0.855 31 H 0.270 0.730 32 H 0.159 0.841 33 H 0.107 0.893 34 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.282 12.183 0.127 12.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.148 4.148 3 C -0.069 4.069 4 C -0.175 4.175 5 C -0.028 4.028 6 C -0.774 4.774 7 S 2.746 3.254 8 O -0.940 6.940 9 O -0.979 6.979 10 N -0.651 5.651 11 C -0.422 4.422 12 H 0.123 0.877 13 C -0.169 4.169 14 N -0.505 5.505 15 Si 0.741 3.259 16 H -0.190 1.190 17 H -0.206 1.206 18 H -0.207 1.207 19 C -0.010 4.010 20 C 0.290 3.710 21 O -0.394 6.394 22 O -0.338 6.338 23 C 0.197 3.803 24 F -0.087 7.087 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.149 0.851 29 H 0.149 0.851 30 H 0.162 0.838 31 H 0.080 0.920 32 H 0.176 0.824 33 H 0.124 0.876 34 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -1.808 11.603 -0.871 11.775 hybrid contribution -1.597 0.513 1.185 2.054 sum -3.404 12.115 0.315 12.589 Atomic orbital electron populations 1.20704 0.89957 1.03142 1.02954 1.19955 0.97132 0.92065 1.05616 1.21039 0.94253 0.96775 0.94847 1.21170 0.94295 0.98131 1.03936 1.20795 1.00365 0.90398 0.91218 1.31377 1.04595 1.23124 1.18256 1.03859 0.73215 0.73255 0.75048 1.93511 1.78943 1.65532 1.56061 1.93434 1.31764 1.85308 1.87365 1.52356 1.39225 1.54290 1.19270 1.19414 0.92208 1.03473 1.27131 0.87676 1.25279 0.97708 0.94778 0.99153 1.69881 1.23933 1.21964 1.34728 0.86048 0.82413 0.78789 0.78624 1.18980 1.20576 1.20679 1.21070 0.92722 0.98453 0.88790 1.25365 0.83643 0.82658 0.79309 1.90637 1.23201 1.54372 1.71181 1.84629 1.55976 1.56439 1.36765 1.16810 0.88265 0.81580 0.93628 1.91599 1.79811 1.44986 1.92260 0.90712 0.91226 0.90966 0.85053 0.85098 0.83779 0.92004 0.82443 0.87559 0.75039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 9.84 36.00 0.35 -1.08 16 2 C -0.15 -2.36 5.89 -104.56 -0.62 -2.97 16 3 C -0.05 -0.69 9.70 -39.59 -0.38 -1.07 16 4 C -0.16 -2.15 10.04 -39.58 -0.40 -2.55 16 5 C -0.01 -0.15 9.55 -39.59 -0.38 -0.53 16 6 C -0.69 -14.07 5.67 -39.52 -0.22 -14.29 16 7 S 2.65 62.39 5.30 -107.50 -0.57 61.82 16 8 O -0.95 -24.94 16.64 -57.17 -0.95 -25.90 16 9 O -0.99 -23.01 15.52 -57.17 -0.89 -23.90 16 10 N -0.82 -20.19 2.38 -61.09 -0.15 -20.34 16 11 C -0.29 -7.62 8.47 -15.06 -0.13 -7.75 16 12 H 0.11 2.81 5.75 -52.48 -0.30 2.51 16 13 C 0.04 0.94 4.97 -17.44 -0.09 0.86 16 14 N -0.87 -22.47 11.26 55.49 0.63 -21.85 16 15 Si 0.92 20.51 29.62 -169.99 -5.03 15.48 16 16 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 C 0.12 2.65 5.89 -5.19 -0.03 2.62 16 20 C 0.45 9.17 8.36 36.01 0.30 9.47 16 21 O -0.51 -11.29 16.82 -18.75 -0.32 -11.61 16 22 O -0.53 -8.59 13.42 -39.23 -0.53 -9.11 16 23 C 0.22 4.37 7.15 -39.42 -0.28 4.09 16 24 F -0.11 -2.39 13.09 2.25 0.03 -2.36 16 25 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 27 H 0.07 0.96 7.64 -51.93 -0.40 0.56 16 28 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 29 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.14 2.23 7.33 -52.48 -0.38 1.85 16 31 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 32 H 0.16 3.71 5.29 -51.93 -0.27 3.44 16 33 H 0.11 2.17 6.90 -51.93 -0.36 1.81 16 34 H 0.39 4.50 9.10 45.56 0.41 4.92 16 LS Contribution 313.57 15.07 4.73 4.73 Total: -1.00 -32.52 313.57 -7.05 -39.57 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -2.12 Total: 6.67 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -1.87 Total: -13.20 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 0.48 Total: -42.18 kcal Atomic # 8 Polarization: -67.84 SS G_CDS: -2.68 Total: -70.52 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.03 Total: -2.36 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Atomic # 16 Polarization: 62.39 SS G_CDS: -0.57 Total: 61.82 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.52 -7.05 -39.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833753687.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.317 kcal (2) G-P(sol) polarization free energy of solvation -32.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds