Wall clock time and date at job start Tue Mar 31 2020 12:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38220 * 120.01305 * 2 1 4 4 C 1.38223 * 120.02783 * 180.02562 * 3 2 1 5 5 C 1.38271 * 120.04808 * 359.97438 * 4 3 2 6 6 C 1.38178 * 120.02432 * 359.79574 * 5 4 3 7 7 S 1.76204 * 120.01085 * 180.22649 * 6 5 4 8 8 O 1.42093 * 106.40127 * 228.77102 * 7 6 5 9 9 O 1.42100 * 106.40068 * 1.69188 * 7 6 5 10 10 N 1.65598 * 107.21763 * 115.22769 * 7 6 5 11 11 C 1.36940 * 119.99674 * 90.00252 * 10 7 6 12 12 H 1.08004 * 120.00065 * 327.40590 * 11 10 7 13 13 C 1.38805 * 120.00181 * 147.40416 * 11 10 7 14 14 N 1.31613 * 120.00290 * 335.38332 * 13 11 10 15 15 Si 1.86800 * 120.00025 * 155.38183 * 13 11 10 16 16 H 1.48498 * 109.47300 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47456 * 120.00405 * 15 13 11 18 18 H 1.48503 * 109.47150 * 240.00386 * 15 13 11 19 19 C 1.46497 * 120.00267 * 269.99866 * 10 7 6 20 20 C 1.50706 * 109.46935 * 95.68226 * 19 10 7 21 21 O 1.20827 * 119.99619 * 359.97438 * 20 19 10 22 22 O 1.34220 * 119.99989 * 180.02562 * 20 19 10 23 23 C 1.38438 * 120.01475 * 180.02562 * 2 1 3 24 24 F 1.35095 * 120.02369 * 359.95500 * 23 2 1 25 25 H 1.08996 * 109.47649 * 269.97893 * 1 2 3 26 26 H 1.09005 * 109.47283 * 29.97989 * 1 2 3 27 27 H 1.08999 * 109.47191 * 149.97595 * 1 2 3 28 28 H 1.08005 * 119.98609 * 0.04316 * 3 2 1 29 29 H 1.07993 * 119.97463 * 180.02562 * 4 3 2 30 30 H 1.08004 * 119.98271 * 180.02562 * 5 4 3 31 31 H 0.97000 * 120.00949 * 179.97438 * 14 13 11 32 32 H 1.09004 * 109.46727 * 215.67519 * 19 10 7 33 33 H 1.08995 * 109.47508 * 335.67720 * 19 10 7 34 34 H 0.96704 * 117.00375 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1969 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.2732 0.0005 -0.0005 6 6 3.5842 -1.1972 0.0043 7 16 4.4672 -2.7220 0.0103 8 8 3.8908 -3.5235 -1.0117 9 8 5.8474 -2.3861 0.0491 10 7 4.1296 -3.4783 1.4442 11 6 3.0616 -4.3307 1.5338 12 1 2.1749 -4.1493 0.9443 13 6 3.1185 -5.4279 2.3821 14 7 4.2833 -5.9390 2.7197 15 14 1.5417 -6.1791 3.0445 16 1 0.3752 -5.4250 2.5192 17 1 1.4497 -7.5972 2.6136 18 1 1.5465 -6.1119 4.5280 19 6 4.9734 -3.2356 2.6169 20 6 4.3516 -2.1592 3.4690 21 8 3.3107 -1.6471 3.1310 22 8 4.9547 -1.7688 4.6028 23 6 2.1995 -1.1987 -0.0005 24 9 1.5248 -2.3691 -0.0001 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6583 2.1322 0.0007 29 1 4.1199 2.1328 -0.0001 30 1 5.3533 0.0020 -0.0005 31 1 4.3232 -6.7056 3.3128 32 1 5.0607 -4.1537 3.1979 33 1 5.9634 -2.9155 2.2923 34 1 4.5182 -1.0749 5.1158 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833753687.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:15 Heat of formation + Delta-G solvation = -189.686667 kcal Electronic energy + Delta-G solvation = -26138.650486 eV Core-core repulsion = 22077.989698 eV Total energy + Delta-G solvation = -4060.660789 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -50.15383 -41.00467 -40.05919 -38.15818 -37.62171 -36.80674 -36.59678 -34.00108 -33.40903 -31.76724 -29.46170 -28.04468 -26.14219 -24.49914 -22.95360 -22.56218 -20.54156 -19.42929 -19.05484 -18.82033 -18.52016 -17.98436 -17.49342 -17.09498 -16.81911 -16.58281 -16.43126 -16.17784 -15.73616 -15.22590 -14.82297 -14.50269 -14.37145 -14.18971 -13.74330 -13.56929 -13.39036 -13.19658 -13.17638 -13.09952 -13.03242 -12.79897 -12.64858 -12.56651 -12.44785 -12.26837 -12.06937 -11.74302 -11.51873 -11.08878 -10.34648 -9.81991 -9.67836 -8.30200 -6.01400 -0.53450 -0.24594 0.10923 1.37640 1.42135 1.43950 1.57128 1.94662 2.31190 2.40766 2.62360 2.72396 3.07240 3.13906 3.41576 3.72279 3.87637 4.10169 4.15931 4.25748 4.39045 4.49599 4.67893 4.71631 4.83424 4.90900 4.94366 5.13270 5.14524 5.23505 5.29978 5.67949 5.73454 5.81539 6.38813 6.90620 7.19773 7.32336 8.74891 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.013684 B = 0.007357 C = 0.006763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.726965 B = 3804.868163 C = 4139.006706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.150 4.150 3 C -0.035 4.035 4 C -0.139 4.139 5 C -0.025 4.025 6 C -0.707 4.707 7 S 2.656 3.344 8 O -0.994 6.994 9 O -0.998 6.998 10 N -0.834 5.834 11 C -0.309 4.309 12 H 0.091 0.909 13 C 0.000 4.000 14 N -0.887 5.887 15 Si 0.966 3.034 16 H -0.270 1.270 17 H -0.275 1.275 18 H -0.271 1.271 19 C 0.112 3.888 20 C 0.460 3.540 21 O -0.527 6.527 22 O -0.513 6.513 23 C 0.174 3.826 24 F -0.134 7.134 25 H 0.078 0.922 26 H 0.109 0.891 27 H 0.057 0.943 28 H 0.185 0.815 29 H 0.180 0.820 30 H 0.153 0.847 31 H 0.274 0.726 32 H 0.146 0.854 33 H 0.117 0.883 34 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.072 15.605 0.992 15.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.152 4.152 3 C -0.052 4.052 4 C -0.157 4.157 5 C -0.044 4.044 6 C -0.796 4.796 7 S 2.755 3.245 8 O -0.984 6.984 9 O -0.988 6.988 10 N -0.664 5.664 11 C -0.442 4.442 12 H 0.109 0.891 13 C -0.203 4.203 14 N -0.528 5.528 15 Si 0.790 3.210 16 H -0.195 1.195 17 H -0.200 1.200 18 H -0.196 1.196 19 C -0.018 4.018 20 C 0.301 3.699 21 O -0.415 6.415 22 O -0.326 6.326 23 C 0.153 3.847 24 F -0.112 7.112 25 H 0.097 0.903 26 H 0.127 0.873 27 H 0.076 0.924 28 H 0.203 0.797 29 H 0.197 0.803 30 H 0.170 0.830 31 H 0.084 0.916 32 H 0.162 0.838 33 H 0.135 0.865 34 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -2.555 14.975 0.037 15.191 hybrid contribution -1.299 -0.326 0.924 1.627 sum -3.854 14.648 0.961 15.177 Atomic orbital electron populations 1.20806 0.87909 1.04452 1.03582 1.20456 0.98853 0.91471 1.04377 1.21710 0.94391 0.97604 0.91528 1.21742 0.94773 0.98486 1.00714 1.21122 1.01053 0.90578 0.91685 1.30786 1.04824 1.22111 1.21891 1.03111 0.73158 0.74056 0.74218 1.93448 1.79589 1.67915 1.57455 1.93403 1.32386 1.85676 1.87355 1.52338 1.39091 1.54764 1.20183 1.19408 0.92677 1.04254 1.27825 0.89129 1.25933 1.00201 0.95070 0.99137 1.69941 1.25105 1.22491 1.35231 0.85296 0.79252 0.78076 0.78407 1.19469 1.20026 1.19580 1.21036 0.93198 0.98831 0.88688 1.24710 0.83095 0.82118 0.79990 1.90633 1.23912 1.55042 1.71941 1.84532 1.55431 1.57234 1.35378 1.17340 0.88533 0.82304 0.96495 1.91524 1.80184 1.46658 1.92875 0.90297 0.87257 0.92376 0.79745 0.80251 0.82985 0.91558 0.83767 0.86516 0.72012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.58 9.84 71.24 0.70 -1.88 16 2 C -0.15 -4.48 5.89 -19.82 -0.12 -4.60 16 3 C -0.03 -0.76 9.70 22.26 0.22 -0.54 16 4 C -0.14 -3.16 10.04 22.27 0.22 -2.94 16 5 C -0.03 -0.81 9.55 22.26 0.21 -0.59 16 6 C -0.71 -29.06 5.67 22.31 0.13 -28.93 16 7 S 2.66 130.24 5.30 -56.49 -0.30 129.94 16 8 O -0.99 -55.44 16.64 -128.00 -2.13 -57.57 16 9 O -1.00 -47.85 15.52 -128.00 -1.99 -49.83 16 10 N -0.83 -42.57 2.38 -347.18 -0.83 -43.40 16 11 C -0.31 -17.00 8.47 84.03 0.71 -16.28 16 12 H 0.09 5.15 5.75 -2.91 -0.02 5.14 16 13 C 0.00 0.01 4.97 84.86 0.42 0.43 16 14 N -0.89 -47.28 11.26 21.65 0.24 -47.04 16 15 Si 0.97 42.82 29.62 68.60 2.03 44.85 16 16 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 18 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 19 C 0.11 5.07 5.89 85.64 0.50 5.58 16 20 C 0.46 18.54 8.36 71.24 0.60 19.14 16 21 O -0.53 -23.26 16.82 21.96 0.37 -22.89 16 22 O -0.51 -15.70 13.42 -51.32 -0.69 -16.39 16 23 C 0.17 7.04 7.15 22.37 0.16 7.20 16 24 F -0.13 -6.23 13.09 44.97 0.59 -5.64 16 25 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.11 1.64 8.09 -2.38 -0.02 1.62 16 27 H 0.06 1.51 7.64 -2.39 -0.02 1.49 16 28 H 0.19 2.11 8.06 -2.91 -0.02 2.08 16 29 H 0.18 2.37 8.06 -2.91 -0.02 2.35 16 30 H 0.15 4.49 7.33 -2.91 -0.02 4.47 16 31 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 32 H 0.15 7.00 5.29 -2.38 -0.01 6.99 16 33 H 0.12 4.88 6.90 -2.39 -0.02 4.87 16 34 H 0.42 8.38 9.10 -74.05 -0.67 7.70 16 Total: -1.00 -74.90 313.57 1.56 -73.34 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 0.50 Total: 18.06 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 3.76 Total: -23.43 kcal Atomic # 7 Polarization: -89.85 SS G_CDS: -0.58 Total: -90.44 kcal Atomic # 8 Polarization: -142.25 SS G_CDS: -4.44 Total: -146.69 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 0.59 Total: -5.64 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: 130.24 SS G_CDS: -0.30 Total: 129.94 kcal Total: -74.90 1.56 -73.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833753687.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.344 kcal (2) G-P(sol) polarization free energy of solvation -74.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds