Wall clock time and date at job start Tue Mar 31 2020 12:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99933 * 2 1 4 4 H 1.48494 * 109.47321 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47117 * 300.00129 * 3 2 1 6 6 H 1.48503 * 109.47141 * 59.99628 * 3 2 1 7 7 C 1.37874 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00155 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00284 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47665 * 180.02562 * 9 7 2 11 11 N 1.46493 * 109.47368 * 180.02562 * 10 9 7 12 12 S 1.65609 * 120.00219 * 165.00033 * 11 10 9 13 13 O 1.42100 * 106.39619 * 311.45848 * 12 11 10 14 14 O 1.42094 * 106.40217 * 178.53982 * 12 11 10 15 15 C 1.76198 * 107.21694 * 64.99538 * 12 11 10 16 16 C 1.38361 * 119.90777 * 90.00084 * 15 12 11 17 17 C 1.38557 * 120.27662 * 179.97438 * 16 15 12 18 18 F 1.35096 * 119.94641 * 180.02562 * 17 16 15 19 19 C 1.38197 * 120.09693 * 359.97438 * 17 16 15 20 20 C 1.39586 * 119.82433 * 0.02562 * 19 17 16 21 21 C 1.47723 * 120.13952 * 180.02562 * 20 19 17 22 22 O 1.21477 * 120.00159 * 180.02562 * 21 20 19 23 23 O 1.34711 * 120.00256 * 0.02562 * 21 20 19 24 24 C 1.37932 * 119.91171 * 270.28296 * 15 12 11 25 25 H 0.97001 * 120.00176 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.47151 * 60.00282 * 9 7 2 27 27 H 1.09003 * 109.47258 * 300.00650 * 9 7 2 28 28 H 1.08994 * 109.47215 * 59.99584 * 10 9 7 29 29 H 1.09008 * 109.46727 * 300.00260 * 10 9 7 30 30 H 0.96994 * 120.00380 * 344.99891 * 11 10 9 31 31 H 1.07998 * 119.86110 * 0.02563 * 16 15 12 32 32 H 1.08002 * 120.08985 * 180.02562 * 19 17 16 33 33 H 0.96700 * 117.00324 * 180.02562 * 23 21 20 34 34 H 1.07995 * 120.05064 * 0.02562 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5129 -4.9307 -0.0012 12 16 2.2988 -6.3404 -0.3725 13 8 3.0288 -6.0904 -1.5657 14 8 1.3369 -7.3795 -0.2531 15 6 3.4933 -6.6204 0.8922 16 6 3.1491 -7.3485 2.0172 17 6 4.0825 -7.5737 3.0162 18 9 3.7394 -8.2860 4.1116 19 6 5.3641 -7.0716 2.8930 20 6 5.7158 -6.3365 1.7598 21 6 7.0840 -5.7971 1.6207 22 8 7.3872 -5.1573 0.6336 23 8 7.9955 -6.0147 2.5884 24 6 4.7672 -6.1081 0.7607 25 1 -0.4850 0.8400 -0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6248 -2.5571 0.8896 28 1 2.8721 -3.6043 0.8894 29 1 2.8721 -3.6042 -0.8906 30 1 0.5677 -4.9452 0.2159 31 1 2.1489 -7.7437 2.1168 32 1 6.0917 -7.2476 3.6715 33 1 8.8773 -5.6416 2.4530 34 1 5.0321 -5.5359 -0.1160 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833760173.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:41 Heat of formation + Delta-G solvation = -189.085728 kcal Electronic energy + Delta-G solvation = -23818.739365 eV Core-core repulsion = 19758.104636 eV Total energy + Delta-G solvation = -4060.634730 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.34528 -40.79882 -38.95981 -37.23143 -36.46668 -35.83147 -35.51549 -32.80173 -32.28555 -31.17922 -29.21936 -25.51879 -24.56001 -23.93054 -21.94382 -21.21309 -19.77434 -18.78567 -18.29460 -17.43946 -16.97145 -16.74354 -16.42629 -16.27178 -16.19264 -16.07999 -15.82638 -15.49526 -14.59479 -14.20832 -13.95249 -13.88235 -13.66690 -13.04224 -12.74361 -12.63560 -12.49443 -12.08062 -11.97311 -11.94159 -11.87740 -11.42855 -11.33849 -11.16145 -10.93787 -10.64857 -10.53875 -10.05614 -9.65052 -9.40048 -9.29820 -9.06587 -8.45296 -6.11736 -4.15281 -0.11029 0.29717 0.46547 1.91027 2.48637 2.86909 3.16195 3.26463 3.34699 3.38918 3.56248 3.73684 4.17027 4.30287 4.37305 4.39705 4.55614 4.68672 4.99579 5.17005 5.25528 5.28781 5.47093 5.55726 5.63439 6.05446 6.08661 6.13120 6.36020 6.63140 7.26877 7.46334 7.50679 7.58941 7.86381 8.23366 8.90752 9.49925 10.99635 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.011379 B = 0.004191 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.033465 B = 6679.112275 C = 7903.902770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.525 4.525 8 H 0.060 0.940 9 C 0.018 3.982 10 C 0.114 3.886 11 N -1.105 6.105 12 S 2.694 3.306 13 O -0.946 6.946 14 O -0.961 6.961 15 C -0.658 4.658 16 C -0.016 4.016 17 C 0.070 3.930 18 F -0.128 7.128 19 C -0.047 4.047 20 C -0.119 4.119 21 C 0.530 3.470 22 O -0.495 6.495 23 O -0.512 6.512 24 C 0.036 3.964 25 H 0.262 0.738 26 H 0.028 0.972 27 H 0.025 0.975 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.420 0.580 31 H 0.162 0.838 32 H 0.159 0.841 33 H 0.419 0.581 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.833 -15.768 7.172 20.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.021 4.021 10 C -0.011 4.011 11 N -0.868 5.868 12 S 2.779 3.221 13 O -0.936 6.936 14 O -0.951 6.951 15 C -0.741 4.741 16 C -0.036 4.036 17 C 0.050 3.950 18 F -0.107 7.107 19 C -0.066 4.066 20 C -0.121 4.121 21 C 0.373 3.627 22 O -0.382 6.382 23 O -0.324 6.324 24 C 0.017 3.983 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.043 0.957 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.255 0.745 31 H 0.180 0.820 32 H 0.177 0.823 33 H 0.279 0.721 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 10.456 -16.204 6.265 20.277 hybrid contribution 0.961 1.231 1.054 1.883 sum 11.417 -14.974 7.319 20.202 Atomic orbital electron populations 1.69962 1.06087 1.26819 1.50218 1.24990 0.94870 0.99385 0.94956 0.86486 0.80145 0.83444 0.77649 1.19592 1.20875 1.20994 1.21114 0.93262 0.90429 1.51560 0.92155 1.19293 0.94010 0.90435 0.98356 1.21751 0.96254 0.82471 1.00575 1.55490 1.21509 1.21936 1.87906 1.02103 0.73249 0.72875 0.73876 1.93620 1.73636 1.84996 1.41380 1.93582 1.59340 1.55401 1.86807 1.31347 1.13676 1.11157 1.17950 1.21208 1.00360 0.92141 0.89908 1.17486 0.93953 0.97860 0.85712 1.91567 1.92541 1.75654 1.50893 1.21702 0.95209 0.92481 0.97235 1.18899 0.91864 1.04238 0.97105 1.20505 0.85209 0.76935 0.80097 1.90977 1.79887 1.37002 1.30380 1.84508 1.26090 1.74030 1.47799 1.21192 0.89524 0.90572 0.97002 0.92844 0.95388 0.95700 0.92882 0.90945 0.74471 0.82014 0.82311 0.72104 0.81646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.61 13.29 55.43 0.74 -24.88 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -13.96 9.11 -34.44 -0.31 -14.27 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 9 C 0.02 0.42 5.11 -27.89 -0.14 0.28 16 10 C 0.11 2.11 6.16 -4.05 -0.02 2.08 16 11 N -1.11 -16.74 6.00 -10.62 -0.06 -16.80 16 12 S 2.69 38.26 5.73 -107.50 -0.62 37.64 16 13 O -0.95 -16.10 16.75 -57.17 -0.96 -17.06 16 14 O -0.96 -14.71 17.27 -57.17 -0.99 -15.70 16 15 C -0.66 -8.08 5.94 -39.65 -0.24 -8.32 16 16 C -0.02 -0.18 9.50 -39.42 -0.37 -0.55 16 17 C 0.07 0.71 7.29 -39.48 -0.29 0.42 16 18 F -0.13 -1.30 17.26 2.25 0.04 -1.26 16 19 C -0.05 -0.44 9.60 -39.09 -0.38 -0.82 16 20 C -0.12 -1.31 5.87 -104.99 -0.62 -1.93 16 21 C 0.53 5.72 8.27 34.61 0.29 6.01 16 22 O -0.49 -6.95 17.13 -19.25 -0.33 -7.28 16 23 O -0.51 -3.64 12.68 -40.52 -0.51 -4.15 16 24 C 0.04 0.45 9.06 -39.17 -0.35 0.10 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 1.35 7.75 -51.92 -0.40 0.95 16 30 H 0.42 5.78 8.65 -34.47 -0.30 5.48 16 31 H 0.16 1.49 7.60 -52.49 -0.40 1.09 16 32 H 0.16 1.10 7.61 -52.49 -0.40 0.70 16 33 H 0.42 1.16 9.11 45.56 0.42 1.57 16 34 H 0.17 2.13 7.20 -52.49 -0.38 1.75 16 LS Contribution 326.75 15.07 4.92 4.92 Total: -1.00 -34.28 326.75 -7.60 -41.88 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -2.27 Total: 2.24 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -2.54 Total: -15.45 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.67 Total: -41.68 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: -2.79 Total: -44.19 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 38.26 SS G_CDS: -0.62 Total: 37.64 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.28 -7.60 -41.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833760173.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.209 kcal (2) G-P(sol) polarization free energy of solvation -34.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds