Wall clock time and date at job start Tue Mar 31 2020 12:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99933 * 2 1 4 4 H 1.48494 * 109.47321 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47117 * 300.00129 * 3 2 1 6 6 H 1.48503 * 109.47141 * 59.99628 * 3 2 1 7 7 C 1.37874 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00155 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00284 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47665 * 180.02562 * 9 7 2 11 11 N 1.46493 * 109.47368 * 180.02562 * 10 9 7 12 12 S 1.65609 * 120.00219 * 165.00033 * 11 10 9 13 13 O 1.42100 * 106.39619 * 311.45848 * 12 11 10 14 14 O 1.42094 * 106.40217 * 178.53982 * 12 11 10 15 15 C 1.76198 * 107.21694 * 64.99538 * 12 11 10 16 16 C 1.38361 * 119.90777 * 90.00084 * 15 12 11 17 17 C 1.38557 * 120.27662 * 179.97438 * 16 15 12 18 18 F 1.35096 * 119.94641 * 180.02562 * 17 16 15 19 19 C 1.38197 * 120.09693 * 359.97438 * 17 16 15 20 20 C 1.39586 * 119.82433 * 0.02562 * 19 17 16 21 21 C 1.47723 * 120.13952 * 180.02562 * 20 19 17 22 22 O 1.21477 * 120.00159 * 180.02562 * 21 20 19 23 23 O 1.34711 * 120.00256 * 0.02562 * 21 20 19 24 24 C 1.37932 * 119.91171 * 270.28296 * 15 12 11 25 25 H 0.97001 * 120.00176 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.47151 * 60.00282 * 9 7 2 27 27 H 1.09003 * 109.47258 * 300.00650 * 9 7 2 28 28 H 1.08994 * 109.47215 * 59.99584 * 10 9 7 29 29 H 1.09008 * 109.46727 * 300.00260 * 10 9 7 30 30 H 0.96994 * 120.00380 * 344.99891 * 11 10 9 31 31 H 1.07998 * 119.86110 * 0.02563 * 16 15 12 32 32 H 1.08002 * 120.08985 * 180.02562 * 19 17 16 33 33 H 0.96700 * 117.00324 * 180.02562 * 23 21 20 34 34 H 1.07995 * 120.05064 * 0.02562 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5129 -4.9307 -0.0012 12 16 2.2988 -6.3404 -0.3725 13 8 3.0288 -6.0904 -1.5657 14 8 1.3369 -7.3795 -0.2531 15 6 3.4933 -6.6204 0.8922 16 6 3.1491 -7.3485 2.0172 17 6 4.0825 -7.5737 3.0162 18 9 3.7394 -8.2860 4.1116 19 6 5.3641 -7.0716 2.8930 20 6 5.7158 -6.3365 1.7598 21 6 7.0840 -5.7971 1.6207 22 8 7.3872 -5.1573 0.6336 23 8 7.9955 -6.0147 2.5884 24 6 4.7672 -6.1081 0.7607 25 1 -0.4850 0.8400 -0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6248 -2.5571 0.8896 28 1 2.8721 -3.6043 0.8894 29 1 2.8721 -3.6042 -0.8906 30 1 0.5677 -4.9452 0.2159 31 1 2.1489 -7.7437 2.1168 32 1 6.0917 -7.2476 3.6715 33 1 8.8773 -5.6416 2.4530 34 1 5.0321 -5.5359 -0.1160 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833760173.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:41 Heat of formation + Delta-G solvation = -215.230410 kcal Electronic energy + Delta-G solvation = -23819.873084 eV Core-core repulsion = 19758.104636 eV Total energy + Delta-G solvation = -4061.768448 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.14061 -41.61630 -39.80088 -38.47708 -37.21731 -37.09268 -37.03519 -34.73439 -33.15336 -32.04340 -31.01564 -26.45459 -26.31941 -24.82945 -23.05736 -22.66505 -20.81905 -19.82776 -19.11557 -18.77758 -18.20411 -17.83515 -17.59489 -17.28817 -17.03268 -17.01735 -16.74446 -16.61938 -16.42544 -15.55896 -15.49275 -14.75479 -14.48630 -14.43321 -13.91351 -13.63493 -13.47879 -13.42982 -13.32134 -13.23527 -13.13417 -13.00533 -12.69540 -12.48853 -12.41643 -12.29396 -11.83883 -11.50360 -11.28775 -10.92053 -10.62729 -10.36015 -10.25052 -8.19963 -6.29839 -0.97735 -0.75392 -0.51237 1.07237 1.42729 1.44708 1.56643 1.76235 1.86185 2.14392 2.43687 2.58277 2.72645 3.15570 3.25141 3.47408 3.55702 3.66994 3.77597 4.18364 4.22325 4.29109 4.46003 4.53629 4.58963 4.75662 4.83115 4.96519 5.30386 5.43882 5.51657 5.65528 5.82623 6.02133 6.23549 6.82359 6.86206 7.39544 8.92136 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.011379 B = 0.004191 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.033465 B = 6679.112275 C = 7903.902770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.961 3.039 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.019 3.981 10 C 0.128 3.872 11 N -1.106 6.106 12 S 2.715 3.285 13 O -0.978 6.978 14 O -0.971 6.971 15 C -0.660 4.660 16 C -0.017 4.017 17 C 0.072 3.928 18 F -0.125 7.125 19 C -0.026 4.026 20 C -0.126 4.126 21 C 0.538 3.462 22 O -0.535 6.535 23 O -0.496 6.496 24 C 0.023 3.977 25 H 0.264 0.736 26 H 0.003 0.997 27 H 0.012 0.988 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.425 0.575 31 H 0.177 0.823 32 H 0.189 0.811 33 H 0.440 0.560 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.526 -16.399 8.879 22.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.786 3.214 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.084 0.916 9 C -0.020 4.020 10 C 0.003 3.997 11 N -0.868 5.868 12 S 2.804 3.196 13 O -0.968 6.968 14 O -0.961 6.961 15 C -0.747 4.747 16 C -0.037 4.037 17 C 0.052 3.948 18 F -0.103 7.103 19 C -0.045 4.045 20 C -0.128 4.128 21 C 0.383 3.617 22 O -0.426 6.426 23 O -0.310 6.310 24 C 0.003 3.997 25 H 0.073 0.927 26 H 0.022 0.978 27 H 0.030 0.970 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.262 0.738 31 H 0.194 0.806 32 H 0.207 0.793 33 H 0.303 0.697 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 12.143 -16.843 7.969 22.240 hybrid contribution 0.490 1.318 0.620 1.537 sum 12.633 -15.524 8.589 21.780 Atomic orbital electron populations 1.70078 1.07637 1.27751 1.51465 1.25861 0.95686 1.03068 0.94706 0.85458 0.79208 0.79100 0.77646 1.18591 1.20716 1.20430 1.21591 0.93860 0.91819 1.50800 0.91584 1.19167 0.94480 0.91843 0.96488 1.21377 0.95045 0.81974 1.01313 1.55320 1.22009 1.21286 1.88190 1.01175 0.72858 0.72015 0.73545 1.93580 1.74159 1.85257 1.43772 1.93565 1.60143 1.55254 1.87118 1.30793 1.12951 1.12930 1.18022 1.21399 1.01379 0.91477 0.89443 1.17468 0.94065 0.97790 0.85522 1.91584 1.92547 1.75553 1.50634 1.21958 0.95317 0.90333 0.96853 1.18938 0.91926 1.04708 0.97267 1.20427 0.85476 0.75971 0.79865 1.90970 1.80582 1.38941 1.32097 1.84458 1.26984 1.73506 1.46063 1.21196 0.90084 0.90992 0.97409 0.92742 0.97817 0.96975 0.91139 0.91290 0.73817 0.80576 0.79330 0.69681 0.82763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.16 13.29 21.45 0.28 -53.88 16 2 C 0.01 0.29 5.46 84.65 0.46 0.75 16 3 Si 0.96 42.81 29.54 68.60 2.03 44.83 16 4 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 7 C -0.54 -29.02 9.11 25.60 0.23 -28.78 16 8 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.02 0.92 5.11 29.85 0.15 1.07 16 10 C 0.13 4.76 6.16 86.38 0.53 5.29 16 11 N -1.11 -33.55 6.00 -187.50 -1.12 -34.67 16 12 S 2.72 76.61 5.73 -56.49 -0.32 76.28 16 13 O -0.98 -33.72 16.75 -128.00 -2.14 -35.86 16 14 O -0.97 -29.10 17.27 -128.00 -2.21 -31.31 16 15 C -0.66 -15.53 5.94 22.23 0.13 -15.40 16 16 C -0.02 -0.34 9.50 22.38 0.21 -0.12 16 17 C 0.07 1.25 7.29 22.34 0.16 1.41 16 18 F -0.12 -2.15 17.26 44.97 0.78 -1.37 16 19 C -0.03 -0.40 9.60 22.59 0.22 -0.18 16 20 C -0.13 -2.53 5.87 -20.10 -0.12 -2.65 16 21 C 0.54 10.62 8.27 70.33 0.58 11.21 16 22 O -0.53 -14.65 17.13 19.91 0.34 -14.31 16 23 O -0.50 -5.49 12.68 -56.21 -0.71 -6.20 16 24 C 0.02 0.55 9.06 22.54 0.20 0.75 16 25 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 26 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 27 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.07 2.60 7.75 -2.38 -0.02 2.58 16 30 H 0.43 11.82 8.65 -96.75 -0.84 10.98 16 31 H 0.18 2.88 7.60 -2.91 -0.02 2.86 16 32 H 0.19 1.75 7.61 -2.91 -0.02 1.73 16 33 H 0.44 1.06 9.11 -74.06 -0.67 0.39 16 34 H 0.15 4.04 7.20 -2.91 -0.02 4.02 16 Total: -1.00 -73.30 326.75 -0.64 -73.94 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -0.33 Total: 9.19 kcal Atomic # 6 Polarization: -29.43 SS G_CDS: 2.77 Total: -26.66 kcal Atomic # 7 Polarization: -87.71 SS G_CDS: -0.84 Total: -88.55 kcal Atomic # 8 Polarization: -82.95 SS G_CDS: -4.73 Total: -87.68 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.78 Total: -1.37 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: 76.61 SS G_CDS: -0.32 Total: 76.28 kcal Total: -73.30 -0.64 -73.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833760173.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.287 kcal (2) G-P(sol) polarization free energy of solvation -73.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds