Wall clock time and date at job start Tue Mar 31 2020 12:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33386 * 125.20107 * 2 1 4 4 C 1.38424 * 114.92099 * 180.02562 * 3 2 1 5 5 C 1.33384 * 114.92035 * 359.97438 * 4 3 2 6 6 C 1.50703 * 125.20349 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46912 * 90.00228 * 6 5 4 8 8 C 1.50703 * 109.46912 * 179.97438 * 7 6 5 9 9 O 1.21278 * 119.99985 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00161 * 179.97438 * 8 7 6 11 11 S 1.65592 * 120.00169 * 179.97438 * 10 8 7 12 12 O 1.42101 * 104.27852 * 181.07115 * 11 10 8 13 13 O 1.42099 * 104.28150 * 308.93162 * 11 10 8 14 14 C 1.81407 * 104.44854 * 65.00503 * 11 10 8 15 15 C 1.50698 * 109.47063 * 179.97438 * 14 11 10 16 16 H 1.08004 * 120.00128 * 359.97438 * 15 14 11 17 17 C 1.37874 * 120.00134 * 179.97438 * 15 14 11 18 18 N 1.31513 * 120.00519 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99935 * 0.02562 * 17 15 14 20 20 H 1.48491 * 109.47240 * 89.99570 * 19 17 15 21 21 H 1.48499 * 109.46898 * 209.99952 * 19 17 15 22 22 H 1.48504 * 109.46788 * 329.99729 * 19 17 15 23 23 S 1.75881 * 109.59619 * 0.24566 * 5 4 3 24 24 H 1.08999 * 109.47643 * 90.00043 * 1 2 3 25 25 H 1.09001 * 109.46764 * 209.99808 * 1 2 3 26 26 H 1.08997 * 109.46991 * 329.99797 * 1 2 3 27 27 H 1.08005 * 122.53979 * 0.02562 * 3 2 1 28 28 H 1.08005 * 122.53856 * 180.02562 * 4 3 2 29 29 H 1.09002 * 109.47152 * 330.00000 * 6 5 4 30 30 H 1.09001 * 109.46980 * 210.00100 * 6 5 4 31 31 H 1.09001 * 109.47194 * 299.99742 * 7 6 5 32 32 H 1.08992 * 109.47399 * 59.99914 * 7 6 5 33 33 H 0.97005 * 119.99463 * 0.02562 * 10 8 7 34 34 H 1.08996 * 109.46730 * 299.99633 * 14 11 10 35 35 H 1.08991 * 109.47022 * 60.00008 * 14 11 10 36 36 H 0.97001 * 120.00463 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 -0.0006 5 6 3.9751 -0.4476 -0.0005 6 6 5.3861 -0.9769 -0.0016 7 6 5.8648 -1.1557 1.4406 8 6 7.2756 -1.6856 1.4395 9 8 7.8425 -1.8988 0.3888 10 7 7.9077 -1.9216 2.6062 11 16 9.4577 -2.5045 2.6050 12 8 9.7782 -2.6506 3.9817 13 8 9.4077 -3.6315 1.7409 14 6 10.4409 -1.1743 1.8603 15 6 11.8881 -1.5906 1.8038 16 1 12.1867 -2.5584 2.1789 17 6 12.8312 -0.7361 1.2734 18 7 14.0942 -1.0991 1.2246 19 14 12.3149 0.9382 0.6253 20 1 12.3878 1.9373 1.7215 21 1 13.2243 1.3444 -0.4761 22 1 10.9222 0.8636 0.1153 23 16 2.5211 -1.4371 -0.0068 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.8668 2.0895 0.0004 28 1 4.3721 1.6351 -0.0002 29 1 6.0384 -0.2714 -0.5162 30 1 5.4132 -1.9380 -0.5152 31 1 5.8377 -0.1946 1.9542 32 1 5.2125 -1.8611 1.9552 33 1 7.4544 -1.7507 3.4466 34 1 10.0797 -0.9770 0.8510 35 1 10.3462 -0.2713 2.4632 36 1 14.7576 -0.4980 0.8511 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835409754.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:14 Heat of formation + Delta-G solvation = -94.154113 kcal Electronic energy + Delta-G solvation = -21401.065458 eV Core-core repulsion = 17910.760448 eV Total energy + Delta-G solvation = -3490.305010 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.04569 -38.33903 -36.38658 -35.30394 -34.39113 -34.26554 -33.26641 -31.33905 -29.82906 -27.43647 -24.32965 -23.12556 -22.84919 -21.13700 -19.31604 -19.05414 -17.87437 -17.57645 -16.97029 -16.56071 -16.10743 -15.47876 -15.31318 -14.79763 -14.63632 -14.23904 -14.16701 -13.78238 -13.52521 -13.11386 -12.75517 -12.73470 -12.58831 -12.47713 -12.14591 -11.86979 -11.83801 -11.68109 -11.42177 -11.32344 -11.27709 -10.91164 -10.87664 -10.69614 -10.36163 -10.10243 -9.88470 -9.43035 -8.84287 -8.73551 -8.70724 -6.32689 -4.42137 0.68110 0.86183 1.32406 1.72862 2.22021 2.45718 3.06073 3.14479 3.23309 3.24662 4.13156 4.21691 4.42787 4.52568 4.64398 4.73766 4.82108 4.87285 4.89980 5.10264 5.11731 5.12357 5.22364 5.31402 5.34660 5.54318 5.56415 5.83885 5.93845 6.02253 6.15497 6.26946 6.29542 6.82228 7.15803 7.60243 7.98447 8.57588 9.21897 10.78204 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.021193 B = 0.003039 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.851538 B = 9211.253436 C =10089.652085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.185 4.185 3 C -0.139 4.139 4 C -0.135 4.135 5 C -0.172 4.172 6 C -0.041 4.041 7 C -0.138 4.138 8 C 0.531 3.469 9 O -0.488 6.488 10 N -1.063 6.063 11 S 2.578 3.422 12 O -0.961 6.961 13 O -0.944 6.944 14 C -0.458 4.458 15 C -0.533 4.533 16 H 0.087 0.913 17 C 0.090 3.910 18 N -0.879 5.879 19 Si 0.882 3.118 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.261 1.261 23 S 0.097 5.903 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.137 0.863 28 H 0.141 0.859 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.427 0.573 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.204 6.018 -0.542 27.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.302 4.302 3 C -0.169 4.169 4 C -0.165 4.165 5 C -0.290 4.290 6 C -0.080 4.080 7 C -0.180 4.180 8 C 0.317 3.683 9 O -0.359 6.359 10 N -0.823 5.823 11 S 2.678 3.322 12 O -0.951 6.951 13 O -0.934 6.934 14 C -0.594 4.594 15 C -0.572 4.572 16 H 0.105 0.895 17 C -0.117 4.117 18 N -0.514 5.514 19 Si 0.708 3.292 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.186 1.186 23 S 0.362 5.638 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.155 0.845 28 H 0.158 0.842 29 H 0.114 0.886 30 H 0.106 0.894 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.261 0.739 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -26.674 3.471 -1.063 26.920 hybrid contribution -0.047 3.117 -0.043 3.117 sum -26.722 6.588 -1.105 27.544 Atomic orbital electron populations 1.20328 0.87943 1.03093 1.02706 1.24500 0.99930 0.95864 1.09930 1.20070 0.92937 0.99181 1.04714 1.20130 0.96272 0.95994 1.04078 1.24438 0.98435 0.96429 1.09662 1.19964 0.89096 1.03319 0.95668 1.21825 0.92838 1.03921 0.99423 1.20562 0.89258 0.75661 0.82786 1.90921 1.67350 1.47582 1.30065 1.55548 1.36437 1.75445 1.14864 1.06300 0.72865 0.78030 0.74959 1.93544 1.81879 1.86532 1.33176 1.93551 1.84057 1.47777 1.68015 1.28098 1.10468 1.12009 1.08837 1.20025 0.86381 1.05520 1.45288 0.89517 1.24858 0.94404 0.98495 0.93912 1.69858 1.01068 1.37129 1.43364 0.86725 0.79514 0.83643 0.79338 1.19621 1.20490 1.18571 1.84349 0.96583 1.09388 1.73522 0.90808 0.91350 0.90593 0.84501 0.84168 0.88579 0.89417 0.87539 0.87884 0.73883 0.88481 0.90181 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 10.38 36.01 0.37 -0.07 16 2 C -0.18 -1.48 6.51 -36.00 -0.23 -1.72 16 3 C -0.14 -1.12 10.05 -41.21 -0.41 -1.54 16 4 C -0.13 -1.18 10.05 -41.21 -0.41 -1.59 16 5 C -0.17 -1.61 5.76 -36.00 -0.21 -1.82 16 6 C -0.04 -0.41 5.00 -27.88 -0.14 -0.55 16 7 C -0.14 -1.29 5.68 -27.88 -0.16 -1.45 16 8 C 0.53 7.55 7.57 -10.98 -0.08 7.47 16 9 O -0.49 -9.06 14.08 -11.55 -0.16 -9.22 16 10 N -1.06 -15.03 5.60 31.22 0.17 -14.85 16 11 S 2.58 53.02 5.03 -107.50 -0.54 52.48 16 12 O -0.96 -21.19 18.08 -57.54 -1.04 -22.23 16 13 O -0.94 -22.81 17.04 -64.78 -1.10 -23.91 16 14 C -0.46 -10.51 4.71 36.00 0.17 -10.34 16 15 C -0.53 -15.09 9.68 -34.44 -0.33 -15.42 16 16 H 0.09 2.63 7.96 -52.48 -0.42 2.21 16 17 C 0.09 2.57 5.47 -17.82 -0.10 2.47 16 18 N -0.88 -26.28 13.96 55.43 0.77 -25.50 16 19 Si 0.88 20.70 27.47 -169.99 -4.67 16.03 16 20 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.26 -5.83 6.54 56.52 0.37 -5.46 16 23 S 0.10 0.86 23.31 -107.50 -2.51 -1.65 16 24 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 28 H 0.14 1.05 8.06 -52.48 -0.42 0.62 16 29 H 0.10 1.00 8.10 -51.93 -0.42 0.58 16 30 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16 31 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.43 4.08 8.79 -34.47 -0.30 3.78 16 34 H 0.10 2.21 6.25 -51.93 -0.32 1.88 16 35 H 0.08 1.62 7.57 -51.93 -0.39 1.22 16 36 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 338.08 15.07 5.09 5.09 Total: -1.00 -36.79 338.08 -9.92 -46.71 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -4.41 Total: 1.60 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: -1.54 Total: -24.56 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.95 Total: -40.36 kcal Atomic # 8 Polarization: -53.06 SS G_CDS: -2.31 Total: -55.36 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.67 Total: 16.03 kcal Atomic # 16 Polarization: 53.88 SS G_CDS: -3.05 Total: 50.84 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -36.79 -9.92 -46.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835409754.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.443 kcal (2) G-P(sol) polarization free energy of solvation -36.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds