Wall clock time and date at job start Tue Mar 31 2020 12:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33386 * 125.20107 * 2 1 4 4 C 1.38424 * 114.92099 * 180.02562 * 3 2 1 5 5 C 1.33384 * 114.92035 * 359.97438 * 4 3 2 6 6 C 1.50703 * 125.20349 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46912 * 90.00228 * 6 5 4 8 8 C 1.50703 * 109.46912 * 179.97438 * 7 6 5 9 9 O 1.21278 * 119.99985 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00161 * 179.97438 * 8 7 6 11 11 S 1.65592 * 120.00169 * 179.97438 * 10 8 7 12 12 O 1.42101 * 104.27852 * 181.07115 * 11 10 8 13 13 O 1.42099 * 104.28150 * 308.93162 * 11 10 8 14 14 C 1.81407 * 104.44854 * 65.00503 * 11 10 8 15 15 C 1.50698 * 109.47063 * 179.97438 * 14 11 10 16 16 H 1.08004 * 120.00128 * 359.97438 * 15 14 11 17 17 C 1.37874 * 120.00134 * 179.97438 * 15 14 11 18 18 N 1.31513 * 120.00519 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99935 * 0.02562 * 17 15 14 20 20 H 1.48491 * 109.47240 * 89.99570 * 19 17 15 21 21 H 1.48499 * 109.46898 * 209.99952 * 19 17 15 22 22 H 1.48504 * 109.46788 * 329.99729 * 19 17 15 23 23 S 1.75881 * 109.59619 * 0.24566 * 5 4 3 24 24 H 1.08999 * 109.47643 * 90.00043 * 1 2 3 25 25 H 1.09001 * 109.46764 * 209.99808 * 1 2 3 26 26 H 1.08997 * 109.46991 * 329.99797 * 1 2 3 27 27 H 1.08005 * 122.53979 * 0.02562 * 3 2 1 28 28 H 1.08005 * 122.53856 * 180.02562 * 4 3 2 29 29 H 1.09002 * 109.47152 * 330.00000 * 6 5 4 30 30 H 1.09001 * 109.46980 * 210.00100 * 6 5 4 31 31 H 1.09001 * 109.47194 * 299.99742 * 7 6 5 32 32 H 1.08992 * 109.47399 * 59.99914 * 7 6 5 33 33 H 0.97005 * 119.99463 * 0.02562 * 10 8 7 34 34 H 1.08996 * 109.46730 * 299.99633 * 14 11 10 35 35 H 1.08991 * 109.47022 * 60.00008 * 14 11 10 36 36 H 0.97001 * 120.00463 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 -0.0006 5 6 3.9751 -0.4476 -0.0005 6 6 5.3861 -0.9769 -0.0016 7 6 5.8648 -1.1557 1.4406 8 6 7.2756 -1.6856 1.4395 9 8 7.8425 -1.8988 0.3888 10 7 7.9077 -1.9216 2.6062 11 16 9.4577 -2.5045 2.6050 12 8 9.7782 -2.6506 3.9817 13 8 9.4077 -3.6315 1.7409 14 6 10.4409 -1.1743 1.8603 15 6 11.8881 -1.5906 1.8038 16 1 12.1867 -2.5584 2.1789 17 6 12.8312 -0.7361 1.2734 18 7 14.0942 -1.0991 1.2246 19 14 12.3149 0.9382 0.6253 20 1 12.3878 1.9373 1.7215 21 1 13.2243 1.3444 -0.4761 22 1 10.9222 0.8636 0.1153 23 16 2.5211 -1.4371 -0.0068 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.8668 2.0895 0.0004 28 1 4.3721 1.6351 -0.0002 29 1 6.0384 -0.2714 -0.5162 30 1 5.4132 -1.9380 -0.5152 31 1 5.8377 -0.1946 1.9542 32 1 5.2125 -1.8611 1.9552 33 1 7.4544 -1.7507 3.4466 34 1 10.0797 -0.9770 0.8510 35 1 10.3462 -0.2713 2.4632 36 1 14.7576 -0.4980 0.8511 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835409754.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:13 Heat of formation + Delta-G solvation = -121.546835 kcal Electronic energy + Delta-G solvation = -21402.253296 eV Core-core repulsion = 17910.760448 eV Total energy + Delta-G solvation = -3491.492848 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.24248 -38.96518 -38.14485 -37.08250 -35.59599 -35.34634 -35.10887 -31.95956 -31.81058 -28.14340 -25.25033 -24.94073 -23.57461 -22.19137 -20.78407 -19.69674 -19.61922 -18.81143 -18.37202 -17.69352 -17.60625 -16.65151 -16.52187 -16.11841 -16.05662 -15.66271 -14.77874 -14.75009 -14.71056 -14.33520 -14.08661 -13.86538 -13.63217 -13.52038 -13.36206 -13.24371 -13.13571 -13.11493 -12.65504 -12.51309 -12.44360 -12.33969 -12.04337 -11.92636 -11.89293 -11.54466 -11.37121 -11.21383 -10.94933 -9.37382 -9.32370 -8.47269 -6.64247 -0.82128 0.08072 0.70690 1.06949 1.11762 1.30568 1.35372 1.46267 1.63311 1.87505 2.25815 2.71997 2.84313 3.12594 3.38107 3.85501 3.91477 4.03416 4.09622 4.24405 4.38294 4.46551 4.48942 4.55202 4.69153 4.76127 4.80027 4.92947 5.09211 5.15363 5.16355 5.33610 5.41657 5.68442 5.75391 5.78550 6.39305 6.49856 7.04282 8.67865 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.021193 B = 0.003039 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.851538 B = 9211.253436 C =10089.652085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.184 4.184 3 C -0.150 4.150 4 C -0.133 4.133 5 C -0.185 4.185 6 C -0.040 4.040 7 C -0.125 4.125 8 C 0.530 3.470 9 O -0.533 6.533 10 N -1.040 6.040 11 S 2.609 3.391 12 O -0.979 6.979 13 O -0.986 6.986 14 C -0.472 4.472 15 C -0.556 4.556 16 H 0.042 0.958 17 C 0.026 3.974 18 N -0.930 5.930 19 Si 0.951 3.049 20 H -0.248 1.248 21 H -0.277 1.277 22 H -0.240 1.240 23 S 0.076 5.924 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.156 0.844 28 H 0.153 0.847 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.143 0.857 32 H 0.128 0.872 33 H 0.450 0.550 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.396 8.756 -0.188 31.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.301 4.301 3 C -0.179 4.179 4 C -0.163 4.163 5 C -0.302 4.302 6 C -0.080 4.080 7 C -0.167 4.167 8 C 0.319 3.681 9 O -0.407 6.407 10 N -0.807 5.807 11 S 2.708 3.292 12 O -0.970 6.970 13 O -0.976 6.976 14 C -0.606 4.606 15 C -0.595 4.595 16 H 0.061 0.939 17 C -0.176 4.176 18 N -0.567 5.567 19 Si 0.771 3.229 20 H -0.172 1.172 21 H -0.202 1.202 22 H -0.163 1.163 23 S 0.340 5.660 24 H 0.099 0.901 25 H 0.091 0.909 26 H 0.109 0.891 27 H 0.173 0.827 28 H 0.171 0.829 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.160 0.840 32 H 0.146 0.854 33 H 0.291 0.709 34 H 0.121 0.879 35 H 0.133 0.867 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -29.877 6.205 -0.662 30.522 hybrid contribution 0.857 2.201 -0.141 2.366 sum -29.021 8.407 -0.803 30.224 Atomic orbital electron populations 1.20435 0.86295 1.04042 1.03459 1.24862 1.01073 0.95188 1.08987 1.20327 0.92764 1.00114 1.04740 1.20371 0.96968 0.96000 1.02995 1.24319 0.97883 0.96739 1.11262 1.19885 0.89696 1.02457 0.95935 1.21924 0.89057 1.05980 0.99736 1.21528 0.90698 0.74314 0.81581 1.90914 1.68594 1.49513 1.31673 1.54934 1.34116 1.75037 1.16645 1.05017 0.73760 0.76791 0.73643 1.93512 1.83144 1.86600 1.33694 1.93499 1.85317 1.49673 1.69105 1.28145 1.07704 1.14568 1.10221 1.20297 0.89745 1.04167 1.45303 0.93949 1.26002 0.94188 1.03459 0.93952 1.70006 1.02656 1.39237 1.44808 0.85651 0.80105 0.77837 0.79314 1.17199 1.20181 1.16347 1.84423 0.97165 1.10437 1.73989 0.90087 0.90922 0.89120 0.82656 0.82931 0.89146 0.91009 0.83954 0.85355 0.70932 0.87950 0.86741 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.38 71.24 0.74 0.04 16 2 C -0.18 -2.50 6.51 24.59 0.16 -2.34 16 3 C -0.15 -1.99 10.05 21.22 0.21 -1.78 16 4 C -0.13 -1.94 10.05 21.22 0.21 -1.73 16 5 C -0.18 -3.05 5.76 24.59 0.14 -2.91 16 6 C -0.04 -0.73 5.00 29.85 0.15 -0.58 16 7 C -0.13 -1.91 5.68 29.85 0.17 -1.74 16 8 C 0.53 13.87 7.57 87.66 0.66 14.53 16 9 O -0.53 -19.33 14.08 13.34 0.19 -19.15 16 10 N -1.04 -26.97 5.60 -173.53 -0.97 -27.94 16 11 S 2.61 106.45 5.03 -56.49 -0.28 106.16 16 12 O -0.98 -42.83 18.08 -127.65 -2.31 -45.14 16 13 O -0.99 -48.59 17.04 -120.72 -2.06 -50.64 16 14 C -0.47 -21.30 4.71 71.24 0.34 -20.96 16 15 C -0.56 -32.35 9.68 25.60 0.25 -32.10 16 16 H 0.04 2.74 7.96 -2.91 -0.02 2.71 16 17 C 0.03 1.49 5.47 84.65 0.46 1.95 16 18 N -0.93 -57.40 13.96 21.45 0.30 -57.10 16 19 Si 0.95 41.75 27.47 68.60 1.88 43.63 16 20 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 21 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.24 -9.65 6.54 99.48 0.65 -9.00 16 23 S 0.08 1.22 23.31 -56.49 -1.32 -0.10 16 24 H 0.08 0.57 8.14 -2.39 -0.02 0.56 16 25 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 28 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 29 H 0.09 1.73 8.10 -2.39 -0.02 1.71 16 30 H 0.07 1.52 8.10 -2.39 -0.02 1.50 16 31 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.45 7.06 8.79 -96.74 -0.85 6.21 16 34 H 0.10 4.54 6.25 -2.39 -0.01 4.52 16 35 H 0.11 4.33 7.57 -2.39 -0.02 4.31 16 36 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -83.32 338.08 -0.87 -84.19 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.20 Total: 13.70 kcal Atomic # 6 Polarization: -51.11 SS G_CDS: 3.50 Total: -47.62 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -0.67 Total: -85.04 kcal Atomic # 8 Polarization: -110.75 SS G_CDS: -4.18 Total: -114.93 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 1.88 Total: 43.63 kcal Atomic # 16 Polarization: 107.67 SS G_CDS: -1.60 Total: 106.07 kcal Total: -83.32 -0.87 -84.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835409754.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.359 kcal (2) G-P(sol) polarization free energy of solvation -83.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds