Wall clock time and date at job start Tue Mar 31 2020 12:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47084 * 2 1 4 4 C 1.50699 * 109.46982 * 119.99685 * 2 1 3 5 5 C 1.37474 * 123.35045 * 294.67549 * 4 2 1 6 6 C 1.33822 * 115.10088 * 179.97438 * 5 4 2 7 7 S 1.70616 * 110.95249 * 0.02562 * 6 5 4 8 8 C 1.36646 * 123.35118 * 114.64974 * 4 2 1 9 9 C 1.46581 * 125.46135 * 0.06078 * 8 4 2 10 10 O 1.21707 * 119.99513 * 5.63478 * 9 8 4 11 11 N 1.34774 * 120.00551 * 185.64080 * 9 8 4 12 12 S 1.65598 * 120.00365 * 179.97438 * 11 9 8 13 13 O 1.42095 * 104.27659 * 181.07053 * 12 11 9 14 14 O 1.42100 * 104.27733 * 308.93077 * 12 11 9 15 15 C 1.81397 * 104.44862 * 64.99902 * 12 11 9 16 16 C 1.50697 * 109.47096 * 179.97438 * 15 12 11 17 17 H 1.08000 * 120.00072 * 0.02562 * 16 15 12 18 18 C 1.37877 * 119.99776 * 179.97438 * 16 15 12 19 19 N 1.31513 * 120.00198 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99725 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47308 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47033 * 120.00287 * 20 18 16 23 23 H 1.48503 * 109.47285 * 239.99882 * 20 18 16 24 24 H 1.09000 * 109.47272 * 300.00284 * 1 2 3 25 25 H 1.08998 * 109.47295 * 60.00624 * 1 2 3 26 26 H 1.09003 * 109.47133 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47272 * 239.99715 * 2 1 3 28 28 H 1.09000 * 109.47298 * 59.99732 * 3 2 1 29 29 H 1.08998 * 109.47311 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46835 * 300.00269 * 3 2 1 31 31 H 1.07997 * 122.45342 * 359.95364 * 5 4 2 32 32 H 1.07998 * 124.52248 * 179.97438 * 6 5 4 33 33 H 0.97001 * 119.99226 * 359.97438 * 11 9 8 34 34 H 1.09007 * 109.47114 * 300.00363 * 15 12 11 35 35 H 1.09000 * 109.47312 * 59.99798 * 15 12 11 36 36 H 0.97005 * 120.00474 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.8322 -0.2428 2.5077 6 6 2.3488 -1.0050 3.4788 7 16 3.1291 -2.3759 2.8284 8 6 2.7315 -1.8836 1.1878 9 6 3.0935 -2.6140 -0.0304 10 8 2.8579 -2.1307 -1.1223 11 7 3.6870 -3.8208 0.0586 12 16 4.0953 -4.6462 -1.3177 13 8 4.6627 -5.8595 -0.8433 14 8 2.9036 -4.6481 -2.0918 15 6 5.3635 -3.6152 -2.1045 16 6 5.8210 -4.2694 -3.3826 17 1 5.3914 -5.2110 -3.6911 18 6 6.7872 -3.6652 -4.1588 19 7 7.3100 -2.5183 -3.7835 20 14 7.3537 -4.4759 -5.7436 21 1 6.6157 -5.7494 -5.9395 22 1 7.0853 -3.5677 -6.8875 23 1 8.8102 -4.7544 -5.6639 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.6766 1.9564 0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.2976 0.6730 2.7125 32 1 2.2814 -0.7818 4.5333 33 1 3.8750 -4.2057 0.9288 34 1 4.9465 -2.6330 -2.3275 35 1 6.2122 -3.5046 -1.4294 36 1 7.9900 -2.0934 -4.3293 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835411242.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:34 Heat of formation + Delta-G solvation = -90.938807 kcal Electronic energy + Delta-G solvation = -22435.116797 eV Core-core repulsion = 18944.951213 eV Total energy + Delta-G solvation = -3490.165584 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.18491 -38.35199 -36.26493 -35.20199 -34.40129 -33.94015 -33.35896 -29.90412 -29.06231 -27.11745 -25.20751 -23.56185 -22.45468 -21.65773 -19.66689 -18.95990 -17.73455 -17.28509 -16.50155 -16.27004 -15.78230 -15.63708 -14.93882 -14.62243 -14.26811 -14.23039 -13.94697 -13.66164 -13.56558 -12.84570 -12.61330 -12.53973 -12.18422 -12.12297 -11.94086 -11.58088 -11.46386 -11.32025 -11.22940 -11.13264 -11.01814 -10.93184 -10.79501 -10.67382 -10.54576 -9.86209 -9.68374 -9.20288 -9.00739 -8.71715 -8.62615 -6.33399 -4.44730 0.30896 0.99523 1.29378 1.69485 2.16515 2.93859 3.14157 3.21041 3.28225 3.34916 4.21423 4.38113 4.59935 4.62745 4.85913 4.96788 4.99516 5.12731 5.15976 5.22403 5.25198 5.51195 5.61434 5.62249 5.82265 5.86708 6.00507 6.06844 6.20247 6.27822 6.53132 6.60801 6.75077 6.95110 7.41553 7.68332 7.74001 8.56469 9.22754 10.78385 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.017413 B = 0.004259 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.598110 B = 6572.072310 C = 7246.769368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.074 4.074 3 C -0.138 4.138 4 C 0.000 4.000 5 C -0.144 4.144 6 C -0.224 4.224 7 S 0.200 5.800 8 C -0.277 4.277 9 C 0.614 3.386 10 O -0.473 6.473 11 N -1.058 6.058 12 S 2.552 3.448 13 O -0.966 6.966 14 O -0.949 6.949 15 C -0.402 4.402 16 C -0.535 4.535 17 H 0.072 0.928 18 C 0.078 3.922 19 N -0.876 5.876 20 Si 0.907 3.093 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.277 1.277 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.124 0.876 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.145 0.855 32 H 0.170 0.830 33 H 0.420 0.580 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.387 6.725 15.702 19.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.094 4.094 3 C -0.196 4.196 4 C -0.016 4.016 5 C -0.175 4.175 6 C -0.362 4.362 7 S 0.469 5.531 8 C -0.399 4.399 9 C 0.400 3.600 10 O -0.346 6.346 11 N -0.816 5.816 12 S 2.654 3.346 13 O -0.957 6.957 14 O -0.939 6.939 15 C -0.540 4.540 16 C -0.574 4.574 17 H 0.090 0.910 18 C -0.129 4.129 19 N -0.512 5.512 20 Si 0.733 3.267 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.142 0.858 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.163 0.837 32 H 0.187 0.813 33 H 0.254 0.746 34 H 0.118 0.882 35 H 0.104 0.896 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.084 5.121 15.322 18.534 hybrid contribution 0.054 1.278 -0.494 1.371 sum -9.029 6.399 14.828 18.502 Atomic orbital electron populations 1.21766 0.94063 1.02017 1.01627 1.20493 0.96011 0.96286 0.96609 1.21785 1.01506 0.94689 1.01611 1.19570 0.93810 0.91975 0.96198 1.19873 1.04301 1.02474 0.90900 1.25265 1.05552 1.00815 1.04572 1.82998 1.51870 1.22393 0.95858 1.24371 1.14736 1.03700 0.97058 1.16742 0.75441 0.79592 0.88179 1.90908 1.50643 1.65837 1.27226 1.55496 1.68073 1.29450 1.28584 1.07246 0.78013 0.76131 0.73163 1.93523 1.80298 1.42558 1.79313 1.93533 1.45826 1.86480 1.68057 1.27607 1.09113 1.09930 1.07304 1.20325 1.24511 1.07881 1.04711 0.91029 1.24918 0.95071 0.94603 0.98293 1.69966 1.26751 1.15993 1.38509 0.86277 0.78702 0.79831 0.81900 1.18933 1.20251 1.20305 0.93006 0.91940 0.92572 0.85804 0.93012 0.92359 0.91969 0.83711 0.81283 0.74599 0.88196 0.89595 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.09 37.16 0.34 -1.16 16 2 C -0.07 -0.96 3.07 -91.77 -0.28 -1.24 16 3 C -0.14 -1.51 8.99 37.16 0.33 -1.18 16 4 C 0.00 0.00 4.72 -105.48 -0.50 -0.50 16 5 C -0.14 -1.41 9.18 -41.41 -0.38 -1.79 16 6 C -0.22 -1.93 10.92 29.18 0.32 -1.61 16 7 S 0.20 2.02 22.17 -107.50 -2.38 -0.36 16 8 C -0.28 -3.90 6.45 -36.79 -0.24 -4.14 16 9 C 0.61 10.86 7.51 -12.90 -0.10 10.76 16 10 O -0.47 -9.83 12.09 -11.94 -0.14 -9.97 16 11 N -1.06 -18.20 5.60 30.24 0.17 -18.03 16 12 S 2.55 56.33 5.03 -107.50 -0.54 55.79 16 13 O -0.97 -22.33 18.08 -57.54 -1.04 -23.37 16 14 O -0.95 -23.71 17.04 -64.79 -1.10 -24.81 16 15 C -0.40 -10.07 5.64 36.00 0.20 -9.87 16 16 C -0.53 -15.01 9.13 -34.44 -0.31 -15.32 16 17 H 0.07 1.96 7.71 -52.49 -0.40 1.56 16 18 C 0.08 2.17 5.46 -17.82 -0.10 2.07 16 19 N -0.88 -25.05 13.29 55.43 0.74 -24.31 16 20 Si 0.91 21.14 29.54 -169.99 -5.02 16.12 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H 0.05 0.46 8.00 -51.93 -0.42 0.05 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.12 2.01 4.95 -51.93 -0.26 1.75 16 28 H 0.05 0.46 7.50 -51.93 -0.39 0.07 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.15 1.11 7.67 -52.49 -0.40 0.71 16 32 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.42 5.64 7.92 -34.47 -0.27 5.37 16 34 H 0.10 2.60 7.19 -51.92 -0.37 2.23 16 35 H 0.09 2.07 8.14 -51.92 -0.42 1.65 16 36 H 0.27 7.12 8.31 -40.82 -0.34 6.79 16 LS Contribution 332.32 15.07 5.01 5.01 Total: -1.00 -34.55 332.32 -9.22 -43.77 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -4.19 Total: 4.15 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: -0.71 Total: -23.98 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 0.91 Total: -42.34 kcal Atomic # 8 Polarization: -55.87 SS G_CDS: -2.29 Total: -58.16 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 58.36 SS G_CDS: -2.92 Total: 55.43 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.55 -9.22 -43.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835411242.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.168 kcal (2) G-P(sol) polarization free energy of solvation -34.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds