Wall clock time and date at job start Tue Mar 31 2020 12:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47084 * 2 1 4 4 C 1.50699 * 109.46982 * 119.99685 * 2 1 3 5 5 C 1.37474 * 123.35045 * 294.67549 * 4 2 1 6 6 C 1.33822 * 115.10088 * 179.97438 * 5 4 2 7 7 S 1.70616 * 110.95249 * 0.02562 * 6 5 4 8 8 C 1.36646 * 123.35118 * 114.64974 * 4 2 1 9 9 C 1.46581 * 125.46135 * 0.06078 * 8 4 2 10 10 O 1.21707 * 119.99513 * 5.63478 * 9 8 4 11 11 N 1.34774 * 120.00551 * 185.64080 * 9 8 4 12 12 S 1.65598 * 120.00365 * 179.97438 * 11 9 8 13 13 O 1.42095 * 104.27659 * 181.07053 * 12 11 9 14 14 O 1.42100 * 104.27733 * 308.93077 * 12 11 9 15 15 C 1.81397 * 104.44862 * 64.99902 * 12 11 9 16 16 C 1.50697 * 109.47096 * 179.97438 * 15 12 11 17 17 H 1.08000 * 120.00072 * 0.02562 * 16 15 12 18 18 C 1.37877 * 119.99776 * 179.97438 * 16 15 12 19 19 N 1.31513 * 120.00198 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99725 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47308 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47033 * 120.00287 * 20 18 16 23 23 H 1.48503 * 109.47285 * 239.99882 * 20 18 16 24 24 H 1.09000 * 109.47272 * 300.00284 * 1 2 3 25 25 H 1.08998 * 109.47295 * 60.00624 * 1 2 3 26 26 H 1.09003 * 109.47133 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47272 * 239.99715 * 2 1 3 28 28 H 1.09000 * 109.47298 * 59.99732 * 3 2 1 29 29 H 1.08998 * 109.47311 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46835 * 300.00269 * 3 2 1 31 31 H 1.07997 * 122.45342 * 359.95364 * 5 4 2 32 32 H 1.07998 * 124.52248 * 179.97438 * 6 5 4 33 33 H 0.97001 * 119.99226 * 359.97438 * 11 9 8 34 34 H 1.09007 * 109.47114 * 300.00363 * 15 12 11 35 35 H 1.09000 * 109.47312 * 59.99798 * 15 12 11 36 36 H 0.97005 * 120.00474 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.8322 -0.2428 2.5077 6 6 2.3488 -1.0050 3.4788 7 16 3.1291 -2.3759 2.8284 8 6 2.7315 -1.8836 1.1878 9 6 3.0935 -2.6140 -0.0304 10 8 2.8579 -2.1307 -1.1223 11 7 3.6870 -3.8208 0.0586 12 16 4.0953 -4.6462 -1.3177 13 8 4.6627 -5.8595 -0.8433 14 8 2.9036 -4.6481 -2.0918 15 6 5.3635 -3.6152 -2.1045 16 6 5.8210 -4.2694 -3.3826 17 1 5.3914 -5.2110 -3.6911 18 6 6.7872 -3.6652 -4.1588 19 7 7.3100 -2.5183 -3.7835 20 14 7.3537 -4.4759 -5.7436 21 1 6.6157 -5.7494 -5.9395 22 1 7.0853 -3.5677 -6.8875 23 1 8.8102 -4.7544 -5.6639 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.6766 1.9564 0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.2976 0.6730 2.7125 32 1 2.2814 -0.7818 4.5333 33 1 3.8750 -4.2057 0.9288 34 1 4.9465 -2.6330 -2.3275 35 1 6.2122 -3.5046 -1.4294 36 1 7.9900 -2.0934 -4.3293 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835411242.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:33 Heat of formation + Delta-G solvation = -115.968768 kcal Electronic energy + Delta-G solvation = -22436.202178 eV Core-core repulsion = 18944.951213 eV Total energy + Delta-G solvation = -3491.250964 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.46452 -39.39026 -38.16438 -37.12988 -35.79404 -35.45685 -34.94484 -31.17193 -30.84006 -27.98378 -26.24648 -25.61696 -23.57703 -22.61038 -21.13668 -20.36772 -19.24506 -18.80474 -18.21933 -17.59379 -17.40772 -16.77728 -16.53344 -16.33202 -16.07379 -15.33378 -14.98500 -14.60051 -14.51831 -14.44487 -14.18197 -13.91224 -13.51199 -13.46287 -13.35559 -13.27254 -13.17054 -12.94043 -12.76883 -12.59574 -12.39793 -12.17668 -12.16859 -12.05134 -11.81697 -11.67847 -11.16540 -10.93786 -10.81277 -9.91260 -9.43052 -8.44903 -6.64869 -0.84361 -0.63101 0.41971 0.88920 1.16639 1.36314 1.37846 1.48991 1.52681 1.83707 2.28617 2.67805 2.88693 3.11297 3.37056 3.78943 3.83090 3.96438 4.24655 4.30437 4.40337 4.59187 4.69971 4.70727 4.76920 4.81738 4.97491 5.02952 5.12935 5.22569 5.26393 5.34249 5.39542 5.48516 5.64288 5.70665 6.35769 6.45085 7.07275 8.68446 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.017413 B = 0.004259 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.598110 B = 6572.072310 C = 7246.769368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.084 4.084 3 C -0.133 4.133 4 C 0.006 3.994 5 C -0.157 4.157 6 C -0.194 4.194 7 S 0.233 5.767 8 C -0.329 4.329 9 C 0.608 3.392 10 O -0.515 6.515 11 N -1.045 6.045 12 S 2.596 3.404 13 O -0.975 6.975 14 O -0.979 6.979 15 C -0.417 4.417 16 C -0.569 4.569 17 H 0.069 0.931 18 C 0.026 3.974 19 N -0.908 5.908 20 Si 0.970 3.030 21 H -0.261 1.261 22 H -0.268 1.268 23 H -0.262 1.262 24 H 0.079 0.921 25 H 0.065 0.935 26 H 0.039 0.961 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.041 0.959 30 H 0.064 0.936 31 H 0.175 0.825 32 H 0.211 0.789 33 H 0.438 0.562 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.971 7.439 18.163 22.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.104 4.104 3 C -0.190 4.190 4 C -0.011 4.011 5 C -0.187 4.187 6 C -0.331 4.331 7 S 0.502 5.498 8 C -0.451 4.451 9 C 0.398 3.602 10 O -0.391 6.391 11 N -0.808 5.808 12 S 2.697 3.303 13 O -0.965 6.965 14 O -0.969 6.969 15 C -0.552 4.552 16 C -0.608 4.608 17 H 0.087 0.913 18 C -0.177 4.177 19 N -0.544 5.544 20 Si 0.791 3.209 21 H -0.185 1.185 22 H -0.193 1.193 23 H -0.187 1.187 24 H 0.098 0.902 25 H 0.084 0.916 26 H 0.059 0.941 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.192 0.808 32 H 0.228 0.772 33 H 0.276 0.724 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.644 5.821 17.805 21.069 hybrid contribution 0.183 1.133 -1.083 1.578 sum -9.462 6.954 16.722 20.433 Atomic orbital electron populations 1.21731 0.92487 1.01486 1.03210 1.20479 0.97397 0.97085 0.95470 1.21752 1.00421 0.93650 1.03223 1.19833 0.92557 0.91220 0.97445 1.20042 1.05339 1.03907 0.89378 1.25819 1.02247 0.98763 1.06311 1.82874 1.51384 1.22872 0.92641 1.24162 1.18199 1.05069 0.97650 1.17355 0.74456 0.79183 0.89240 1.90902 1.52388 1.66578 1.29270 1.54960 1.68001 1.29651 1.28216 1.05603 0.76374 0.75119 0.73197 1.93499 1.80445 1.42962 1.79634 1.93489 1.46587 1.86865 1.69997 1.27636 1.10591 1.09748 1.07236 1.20752 1.25322 1.08345 1.06367 0.91275 1.25891 0.94951 0.95137 1.01760 1.70048 1.27233 1.17139 1.39987 0.85328 0.78916 0.79018 0.77591 1.18459 1.19290 1.18651 0.90175 0.91577 0.94133 0.89968 0.90053 0.93997 0.91685 0.80810 0.77181 0.72410 0.90165 0.89535 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 9.09 71.98 0.65 -2.12 16 2 C -0.08 -2.19 3.07 -11.54 -0.04 -2.22 16 3 C -0.13 -2.80 8.99 71.98 0.65 -2.16 16 4 C 0.01 0.15 4.72 -20.42 -0.10 0.06 16 5 C -0.16 -2.49 9.18 21.09 0.19 -2.29 16 6 C -0.19 -2.44 10.92 66.82 0.73 -1.72 16 7 S 0.23 4.13 22.17 -56.49 -1.25 2.88 16 8 C -0.33 -9.21 6.45 24.08 0.16 -9.06 16 9 C 0.61 22.45 7.51 86.42 0.65 23.10 16 10 O -0.52 -23.05 12.09 12.00 0.15 -22.90 16 11 N -1.05 -36.98 5.60 -176.45 -0.99 -37.97 16 12 S 2.60 118.63 5.03 -56.49 -0.28 118.35 16 13 O -0.97 -45.52 18.08 -127.65 -2.31 -47.83 16 14 O -0.98 -50.89 17.04 -120.72 -2.06 -52.95 16 15 C -0.42 -21.95 5.64 71.24 0.40 -21.54 16 16 C -0.57 -33.05 9.13 25.60 0.23 -32.82 16 17 H 0.07 3.92 7.71 -2.91 -0.02 3.89 16 18 C 0.03 1.49 5.46 84.65 0.46 1.95 16 19 N -0.91 -53.20 13.29 21.45 0.28 -52.92 16 20 Si 0.97 43.61 29.54 68.60 2.03 45.63 16 21 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 23 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 24 H 0.08 1.21 8.00 -2.39 -0.02 1.19 16 25 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.08 2.89 4.95 -2.39 -0.01 2.87 16 28 H 0.08 1.21 7.50 -2.39 -0.02 1.19 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.17 1.75 7.67 -2.91 -0.02 1.73 16 32 H 0.21 0.97 8.06 -2.91 -0.02 0.95 16 33 H 0.44 11.74 7.92 -96.74 -0.77 10.98 16 34 H 0.08 4.49 7.19 -2.39 -0.02 4.47 16 35 H 0.09 4.41 8.14 -2.39 -0.02 4.39 16 36 H 0.28 14.84 8.31 -92.70 -0.77 14.07 16 Total: -1.00 -78.16 332.32 -0.09 -78.24 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.35 Total: 18.28 kcal Atomic # 6 Polarization: -52.81 SS G_CDS: 3.99 Total: -48.82 kcal Atomic # 7 Polarization: -90.18 SS G_CDS: -0.70 Total: -90.89 kcal Atomic # 8 Polarization: -119.46 SS G_CDS: -4.22 Total: -123.68 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 122.76 SS G_CDS: -1.54 Total: 121.23 kcal Total: -78.16 -0.09 -78.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835411242.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.727 kcal (2) G-P(sol) polarization free energy of solvation -78.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds