Wall clock time and date at job start Tue Mar 31 2020 12:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34727 * 116.99577 * 2 1 4 4 O 1.21491 * 120.00336 * 0.02562 * 3 2 1 5 5 C 1.47607 * 119.99869 * 179.97438 * 3 2 1 6 6 C 1.39721 * 120.11964 * 359.97438 * 5 3 2 7 7 C 1.37805 * 119.87065 * 179.76691 * 6 5 3 8 8 C 1.50693 * 119.94026 * 180.25221 * 7 6 5 9 9 C 1.38693 * 120.12243 * 0.50551 * 7 6 5 10 10 F 1.35093 * 119.87182 * 179.77100 * 9 7 6 11 11 C 1.38645 * 120.24815 * 359.48838 * 9 7 6 12 12 S 1.76203 * 119.93901 * 180.27581 * 11 9 7 13 13 O 1.42099 * 106.40560 * 177.99920 * 12 11 9 14 14 O 1.42098 * 106.40275 * 310.92585 * 12 11 9 15 15 N 1.65607 * 107.21320 * 64.45844 * 12 11 9 16 16 C 1.36940 * 119.99873 * 64.34559 * 15 12 11 17 17 H 1.07995 * 119.99955 * 4.86096 * 16 15 12 18 18 C 1.38811 * 119.99964 * 184.86160 * 16 15 12 19 19 N 1.31618 * 120.00317 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99692 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47116 * 90.00333 * 20 18 16 22 22 H 1.48502 * 109.46725 * 209.99527 * 20 18 16 23 23 H 1.48491 * 109.47487 * 329.99772 * 20 18 16 24 24 C 1.37841 * 120.12650 * 0.25792 * 11 9 7 25 25 H 1.09002 * 109.47172 * 60.00025 * 1 2 3 26 26 H 1.09001 * 109.46723 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47184 * 299.99679 * 1 2 3 28 28 H 1.07994 * 120.06563 * 0.02562 * 6 5 3 29 29 H 1.09007 * 109.47261 * 270.25531 * 8 7 6 30 30 H 1.09007 * 109.47347 * 30.25060 * 8 7 6 31 31 H 1.08992 * 109.47767 * 150.25085 * 8 7 6 32 32 H 0.96997 * 119.99968 * 244.33904 * 15 12 11 33 33 H 0.96992 * 120.00055 * 179.97438 * 19 18 16 34 34 H 1.07996 * 120.06365 * 180.02562 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2005 0.0000 4 8 1.4018 2.2194 0.0005 5 6 3.5376 1.2778 0.0006 6 6 4.3011 0.1076 0.0017 7 6 5.6769 0.1858 -0.0027 8 6 6.5018 -1.0753 -0.0073 9 6 6.3038 1.4230 0.0025 10 9 7.6529 1.4937 0.0029 11 6 5.5511 2.5873 0.0013 12 16 6.3560 4.1548 0.0006 13 8 5.3275 5.1340 -0.0482 14 8 7.3332 4.1045 1.0310 15 7 7.1873 4.2781 -1.4265 16 6 6.5074 4.3031 -2.6149 17 1 5.4276 4.3216 -2.6190 18 6 7.2061 4.3046 -3.8143 19 7 6.5527 4.3281 -4.9566 20 14 9.0739 4.2733 -3.8072 21 1 9.5453 2.8652 -3.8208 22 1 9.5853 4.9780 -5.0101 23 1 9.5757 4.9516 -2.5853 24 6 4.1743 2.5211 0.0004 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.8139 -0.8562 0.0017 29 1 6.7003 -1.3834 1.0193 30 1 5.9562 -1.8646 -0.5245 31 1 7.4457 -0.8902 -0.5199 32 1 8.1557 4.3328 -1.4205 33 1 7.0410 4.3295 -5.7947 34 1 3.5890 3.4287 -0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848693953.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:23 Heat of formation + Delta-G solvation = -172.828442 kcal Electronic energy + Delta-G solvation = -24772.808604 eV Core-core repulsion = 20712.878843 eV Total energy + Delta-G solvation = -4059.929761 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 3.45 seconds Orbital eigenvalues (eV) -49.00412 -40.56505 -38.70712 -36.46188 -36.15327 -34.87931 -34.84144 -32.98063 -31.71044 -31.30468 -27.80071 -27.11028 -24.38101 -24.05856 -22.88744 -20.62437 -19.04267 -18.46702 -17.93923 -17.65397 -17.20318 -16.60053 -16.42169 -16.12326 -15.65210 -15.59571 -14.98774 -14.20258 -14.00144 -13.68973 -13.62003 -13.41959 -13.29084 -13.24769 -12.98504 -12.80989 -12.35364 -12.12801 -11.92558 -11.64330 -11.54792 -11.17656 -11.12350 -11.00750 -10.90862 -10.65541 -10.53805 -10.44392 -10.22141 -10.09570 -9.24440 -8.70695 -8.62420 -6.62615 -4.05537 0.50407 0.98290 1.32661 2.35786 2.57576 3.03598 3.07035 3.10073 3.47274 3.95423 4.02917 4.11829 4.46552 4.55321 4.63819 4.88686 4.95005 4.98649 5.05401 5.09180 5.20648 5.34428 5.44962 5.51223 5.57549 5.85749 5.92379 5.99306 6.05095 6.13826 6.26262 6.70477 6.74167 7.40525 7.68137 8.14140 8.74608 8.83645 10.46089 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.014160 B = 0.005117 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.958666 B = 5470.728221 C = 5743.148186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.514 3.486 4 O -0.499 6.499 5 C -0.162 4.162 6 C -0.002 4.002 7 C -0.157 4.157 8 C -0.111 4.111 9 C 0.229 3.771 10 F -0.116 7.116 11 C -0.698 4.698 12 S 2.585 3.415 13 O -0.958 6.958 14 O -0.994 6.994 15 N -0.960 5.960 16 C -0.261 4.261 17 H 0.126 0.874 18 C 0.050 3.950 19 N -0.849 5.849 20 Si 0.885 3.115 21 H -0.266 1.266 22 H -0.273 1.273 23 H -0.261 1.261 24 C 0.062 3.938 25 H 0.065 0.935 26 H 0.101 0.899 27 H 0.063 0.937 28 H 0.148 0.852 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.393 0.607 33 H 0.280 0.720 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.242 -12.385 6.657 14.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.275 6.275 3 C 0.359 3.641 4 O -0.387 6.387 5 C -0.164 4.164 6 C -0.021 4.021 7 C -0.159 4.159 8 C -0.167 4.167 9 C 0.208 3.792 10 F -0.094 7.094 11 C -0.775 4.775 12 S 2.676 3.324 13 O -0.947 6.947 14 O -0.982 6.982 15 N -0.710 5.710 16 C -0.406 4.406 17 H 0.143 0.857 18 C -0.161 4.161 19 N -0.489 5.489 20 Si 0.710 3.290 21 H -0.191 1.191 22 H -0.198 1.198 23 H -0.186 1.186 24 C 0.043 3.957 25 H 0.084 0.916 26 H 0.120 0.880 27 H 0.082 0.918 28 H 0.166 0.834 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.228 0.772 33 H 0.091 0.909 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.705 -11.585 7.379 14.519 hybrid contribution 1.046 -0.734 -0.538 1.386 sum -3.659 -12.319 6.841 14.558 Atomic orbital electron populations 1.23279 0.75958 1.03627 1.02822 1.86521 1.23599 1.32688 1.84652 1.21014 0.88780 0.81508 0.72833 1.90872 1.66548 1.35845 1.45432 1.19151 0.89245 0.95043 1.12951 1.21269 0.92013 0.98262 0.90524 1.19913 0.94666 0.94427 1.06851 1.20720 0.99631 0.93436 1.02939 1.17182 0.76711 0.93006 0.92301 1.91569 1.28512 1.97061 1.92211 1.32223 1.04696 1.24532 1.16020 1.08658 0.73319 0.76233 0.74223 1.93482 1.58060 1.56285 1.86911 1.93432 1.59703 1.87567 1.57538 1.52523 1.16633 1.79297 1.22592 1.19275 0.94312 1.45352 0.81629 0.85654 1.25276 0.99627 0.96445 0.94753 1.69730 1.36865 1.44607 0.97724 0.86504 0.84009 0.79491 0.78977 1.19122 1.19753 1.18622 1.20934 0.91901 0.97802 0.85077 0.91642 0.88042 0.91802 0.83384 0.90693 0.90647 0.90739 0.77154 0.90907 0.82055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.45 9.81 -40.56 -0.40 -4.85 16 3 C 0.51 8.02 7.89 34.55 0.27 8.29 16 4 O -0.50 -9.04 16.13 -19.26 -0.31 -9.35 16 5 C -0.16 -2.62 5.87 -104.98 -0.62 -3.23 16 6 C 0.00 -0.03 9.26 -39.19 -0.36 -0.39 16 7 C -0.16 -2.30 5.88 -104.62 -0.62 -2.92 16 8 C -0.11 -1.21 9.83 36.00 0.35 -0.85 16 9 C 0.23 4.14 7.16 -39.26 -0.28 3.86 16 10 F -0.12 -2.13 15.48 2.25 0.03 -2.10 16 11 C -0.70 -13.83 5.81 -39.58 -0.23 -14.06 16 12 S 2.58 57.55 5.33 -107.50 -0.57 56.98 16 13 O -0.96 -23.33 16.66 -57.17 -0.95 -24.28 16 14 O -0.99 -23.19 17.45 -57.17 -1.00 -24.18 16 15 N -0.96 -21.94 5.54 31.50 0.17 -21.76 16 16 C -0.26 -6.56 10.12 -15.06 -0.15 -6.72 16 17 H 0.13 3.33 8.03 -52.49 -0.42 2.91 16 18 C 0.05 1.25 5.50 -17.43 -0.10 1.16 16 19 N -0.85 -22.35 13.97 55.49 0.78 -21.58 16 20 Si 0.88 18.66 27.78 -169.99 -4.72 13.94 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 23 H -0.26 -5.24 6.45 56.52 0.36 -4.87 16 24 C 0.06 1.16 9.09 -39.19 -0.36 0.80 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.15 1.51 7.61 -52.49 -0.40 1.11 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 31 H 0.07 0.84 7.63 -51.93 -0.40 0.44 16 32 H 0.39 8.42 5.87 -34.48 -0.20 8.22 16 33 H 0.28 6.81 8.31 -40.82 -0.34 6.47 16 34 H 0.16 3.10 6.91 -52.49 -0.36 2.74 16 LS Contribution 320.82 15.07 4.83 4.83 Total: -1.00 -31.14 320.82 -6.22 -37.35 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -3.06 Total: 7.65 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -1.02 Total: -12.66 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.95 Total: -43.34 kcal Atomic # 8 Polarization: -60.01 SS G_CDS: -2.66 Total: -62.66 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.03 Total: -2.10 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -4.72 Total: 13.94 kcal Atomic # 16 Polarization: 57.55 SS G_CDS: -0.57 Total: 56.98 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.14 -6.22 -37.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848693953.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.475 kcal (2) G-P(sol) polarization free energy of solvation -31.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.45 seconds