Wall clock time and date at job start Tue Mar 31 2020 12:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34727 * 116.99577 * 2 1 4 4 O 1.21491 * 120.00336 * 0.02562 * 3 2 1 5 5 C 1.47607 * 119.99869 * 179.97438 * 3 2 1 6 6 C 1.39721 * 120.11964 * 359.97438 * 5 3 2 7 7 C 1.37805 * 119.87065 * 179.76691 * 6 5 3 8 8 C 1.50693 * 119.94026 * 180.25221 * 7 6 5 9 9 C 1.38693 * 120.12243 * 0.50551 * 7 6 5 10 10 F 1.35093 * 119.87182 * 179.77100 * 9 7 6 11 11 C 1.38645 * 120.24815 * 359.48838 * 9 7 6 12 12 S 1.76203 * 119.93901 * 180.27581 * 11 9 7 13 13 O 1.42099 * 106.40560 * 177.99920 * 12 11 9 14 14 O 1.42098 * 106.40275 * 310.92585 * 12 11 9 15 15 N 1.65607 * 107.21320 * 64.45844 * 12 11 9 16 16 C 1.36940 * 119.99873 * 64.34559 * 15 12 11 17 17 H 1.07995 * 119.99955 * 4.86096 * 16 15 12 18 18 C 1.38811 * 119.99964 * 184.86160 * 16 15 12 19 19 N 1.31618 * 120.00317 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99692 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47116 * 90.00333 * 20 18 16 22 22 H 1.48502 * 109.46725 * 209.99527 * 20 18 16 23 23 H 1.48491 * 109.47487 * 329.99772 * 20 18 16 24 24 C 1.37841 * 120.12650 * 0.25792 * 11 9 7 25 25 H 1.09002 * 109.47172 * 60.00025 * 1 2 3 26 26 H 1.09001 * 109.46723 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47184 * 299.99679 * 1 2 3 28 28 H 1.07994 * 120.06563 * 0.02562 * 6 5 3 29 29 H 1.09007 * 109.47261 * 270.25531 * 8 7 6 30 30 H 1.09007 * 109.47347 * 30.25060 * 8 7 6 31 31 H 1.08992 * 109.47767 * 150.25085 * 8 7 6 32 32 H 0.96997 * 119.99968 * 244.33904 * 15 12 11 33 33 H 0.96992 * 120.00055 * 179.97438 * 19 18 16 34 34 H 1.07996 * 120.06365 * 180.02562 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2005 0.0000 4 8 1.4018 2.2194 0.0005 5 6 3.5376 1.2778 0.0006 6 6 4.3011 0.1076 0.0017 7 6 5.6769 0.1858 -0.0027 8 6 6.5018 -1.0753 -0.0073 9 6 6.3038 1.4230 0.0025 10 9 7.6529 1.4937 0.0029 11 6 5.5511 2.5873 0.0013 12 16 6.3560 4.1548 0.0006 13 8 5.3275 5.1340 -0.0482 14 8 7.3332 4.1045 1.0310 15 7 7.1873 4.2781 -1.4265 16 6 6.5074 4.3031 -2.6149 17 1 5.4276 4.3216 -2.6190 18 6 7.2061 4.3046 -3.8143 19 7 6.5527 4.3281 -4.9566 20 14 9.0739 4.2733 -3.8072 21 1 9.5453 2.8652 -3.8208 22 1 9.5853 4.9780 -5.0101 23 1 9.5757 4.9516 -2.5853 24 6 4.1743 2.5211 0.0004 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.8139 -0.8562 0.0017 29 1 6.7003 -1.3834 1.0193 30 1 5.9562 -1.8646 -0.5245 31 1 7.4457 -0.8902 -0.5199 32 1 8.1557 4.3328 -1.4205 33 1 7.0410 4.3295 -5.7947 34 1 3.5890 3.4287 -0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848693953.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:21 Heat of formation + Delta-G solvation = -195.338568 kcal Electronic energy + Delta-G solvation = -24773.784716 eV Core-core repulsion = 20712.878843 eV Total energy + Delta-G solvation = -4060.905873 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 317.061 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -50.44849 -41.77161 -39.99215 -38.20014 -37.61126 -36.89862 -36.70564 -34.21903 -33.52421 -32.67912 -28.67472 -28.20064 -26.26082 -25.34808 -24.29556 -21.83612 -20.86304 -20.27206 -19.46385 -18.99112 -18.67270 -18.15098 -17.56793 -17.49303 -17.22084 -17.04631 -16.75664 -16.03872 -15.17890 -15.13881 -14.90738 -14.73822 -14.66315 -14.60921 -14.22211 -14.14307 -13.38373 -13.30259 -13.19195 -13.15120 -13.14792 -13.10657 -12.99317 -12.83138 -12.31577 -12.19370 -12.01069 -11.92415 -11.87345 -11.69711 -10.64702 -10.46693 -10.00956 -8.40922 -6.03494 -0.85772 -0.57453 -0.34558 1.07945 1.36007 1.37289 1.43866 1.48269 2.07626 2.23957 2.26449 2.65726 2.75454 3.03977 3.23562 3.38597 3.60103 3.74365 3.91753 4.10853 4.30372 4.34601 4.36158 4.45257 4.60137 4.71526 4.76456 4.81585 4.88891 4.99218 5.07606 5.15060 5.44906 5.63968 6.24841 6.51011 6.89486 7.03776 8.73212 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.014160 B = 0.005117 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.958666 B = 5470.728221 C = 5743.148186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.346 6.346 3 C 0.519 3.481 4 O -0.532 6.532 5 C -0.163 4.163 6 C 0.026 3.974 7 C -0.143 4.143 8 C -0.113 4.113 9 C 0.210 3.790 10 F -0.119 7.119 11 C -0.720 4.720 12 S 2.660 3.340 13 O -0.982 6.982 14 O -0.992 6.992 15 N -0.981 5.981 16 C -0.303 4.303 17 H 0.091 0.909 18 C 0.006 3.994 19 N -0.918 5.918 20 Si 0.935 3.065 21 H -0.255 1.255 22 H -0.271 1.271 23 H -0.247 1.247 24 C 0.044 3.956 25 H 0.060 0.940 26 H 0.144 0.856 27 H 0.065 0.935 28 H 0.198 0.802 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.069 0.931 32 H 0.401 0.599 33 H 0.280 0.720 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.246 -16.219 8.951 19.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.262 6.262 3 C 0.365 3.635 4 O -0.423 6.423 5 C -0.166 4.166 6 C 0.008 3.992 7 C -0.144 4.144 8 C -0.169 4.169 9 C 0.189 3.811 10 F -0.097 7.097 11 C -0.804 4.804 12 S 2.750 3.250 13 O -0.973 6.973 14 O -0.982 6.982 15 N -0.736 5.736 16 C -0.439 4.439 17 H 0.109 0.891 18 C -0.197 4.197 19 N -0.560 5.560 20 Si 0.757 3.243 21 H -0.180 1.180 22 H -0.196 1.196 23 H -0.171 1.171 24 C 0.024 3.976 25 H 0.079 0.921 26 H 0.162 0.838 27 H 0.084 0.916 28 H 0.215 0.785 29 H 0.117 0.883 30 H 0.127 0.873 31 H 0.088 0.912 32 H 0.238 0.762 33 H 0.089 0.911 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.668 -15.366 9.525 18.672 hybrid contribution 0.762 0.219 -0.719 1.070 sum -3.906 -15.147 8.806 17.951 Atomic orbital electron populations 1.23685 0.73724 1.06361 1.02748 1.86498 1.25596 1.30342 1.83729 1.20902 0.88471 0.82042 0.72134 1.90869 1.67165 1.37258 1.47019 1.19255 0.90198 0.94796 1.12318 1.21834 0.91447 0.99168 0.86711 1.20416 0.95412 0.94482 1.04103 1.20920 0.99126 0.91954 1.04887 1.17483 0.76596 0.93864 0.93184 1.91561 1.28700 1.97129 1.92346 1.31274 1.05432 1.22711 1.20979 1.03844 0.72843 0.75552 0.72728 1.93493 1.59107 1.57579 1.87078 1.93476 1.60201 1.87962 1.56542 1.51685 1.16626 1.84132 1.21124 1.18756 0.92784 1.49657 0.82702 0.89140 1.25823 1.03709 0.96156 0.94059 1.69830 1.38264 1.49662 0.98210 0.85741 0.79052 0.80116 0.79421 1.17960 1.19603 1.17088 1.20843 0.91386 0.99003 0.86353 0.92118 0.83848 0.91640 0.78458 0.88313 0.87333 0.91234 0.76229 0.91069 0.83640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.60 16 2 O -0.35 -7.28 9.81 -56.37 -0.55 -7.84 16 3 C 0.52 15.12 7.89 70.30 0.55 15.67 16 4 O -0.53 -19.07 16.13 19.86 0.32 -18.75 16 5 C -0.16 -4.92 5.87 -20.10 -0.12 -5.04 16 6 C 0.03 0.59 9.26 22.53 0.21 0.80 16 7 C -0.14 -3.58 5.88 -19.86 -0.12 -3.70 16 8 C -0.11 -1.83 9.83 71.23 0.70 -1.13 16 9 C 0.21 7.17 7.16 22.48 0.16 7.33 16 10 F -0.12 -4.18 15.48 44.97 0.70 -3.48 16 11 C -0.72 -28.25 5.81 22.27 0.13 -28.12 16 12 S 2.66 119.38 5.33 -56.49 -0.30 119.08 16 13 O -0.98 -49.18 16.66 -128.00 -2.13 -51.31 16 14 O -0.99 -45.14 17.45 -128.00 -2.23 -47.37 16 15 N -0.98 -46.10 5.54 -54.27 -0.30 -46.40 16 16 C -0.30 -16.22 10.12 84.03 0.85 -15.37 16 17 H 0.09 5.29 8.03 -2.91 -0.02 5.27 16 18 C 0.01 0.33 5.50 84.86 0.47 0.79 16 19 N -0.92 -52.06 13.97 21.65 0.30 -51.75 16 20 Si 0.93 39.42 27.78 68.60 1.91 41.32 16 21 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.25 -9.59 6.45 99.48 0.64 -8.95 16 24 C 0.04 1.63 9.09 22.53 0.20 1.84 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 26 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.20 2.58 7.61 -2.91 -0.02 2.56 16 29 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.11 1.12 8.09 -2.38 -0.02 1.10 16 31 H 0.07 1.27 7.63 -2.39 -0.02 1.25 16 32 H 0.40 17.34 5.87 -96.75 -0.57 16.77 16 33 H 0.28 14.65 8.31 -92.71 -0.77 13.88 16 34 H 0.15 5.84 6.91 -2.91 -0.02 5.82 16 Total: -1.00 -72.49 320.82 2.48 -70.01 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.54 Total: 21.82 kcal Atomic # 6 Polarization: -29.57 SS G_CDS: 4.24 Total: -25.33 kcal Atomic # 7 Polarization: -98.15 SS G_CDS: 0.00 Total: -98.15 kcal Atomic # 8 Polarization: -120.67 SS G_CDS: -4.60 Total: -125.27 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.70 Total: -3.48 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 1.91 Total: 41.32 kcal Atomic # 16 Polarization: 119.38 SS G_CDS: -0.30 Total: 119.08 kcal Total: -72.49 2.48 -70.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848693953.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.328 kcal (2) G-P(sol) polarization free energy of solvation -72.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds