Wall clock time and date at job start Tue Mar 31 2020 12:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33819 * 124.51955 * 2 1 4 4 C 1.37471 * 115.10140 * 180.02562 * 3 2 1 5 5 C 1.50700 * 123.35270 * 180.02562 * 4 3 2 6 6 C 1.36654 * 113.29657 * 359.97438 * 4 3 2 7 7 C 1.46586 * 125.45753 * 179.97438 * 6 4 3 8 8 O 1.21703 * 120.00023 * 0.02562 * 7 6 4 9 9 N 1.34772 * 119.99634 * 179.97438 * 7 6 4 10 10 S 1.65608 * 119.99575 * 180.02562 * 9 7 6 11 11 O 1.42102 * 104.27363 * 181.07197 * 10 9 7 12 12 O 1.42097 * 104.27711 * 308.92812 * 10 9 7 13 13 C 1.81401 * 104.44945 * 65.00158 * 10 9 7 14 14 C 1.52998 * 109.46866 * 179.97438 * 13 10 9 15 15 C 1.50701 * 109.46802 * 179.97438 * 14 13 10 16 16 H 1.08008 * 120.00279 * 0.02562 * 15 14 13 17 17 C 1.37882 * 120.00102 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99952 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 119.99644 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46688 * 90.00089 * 19 17 15 21 21 H 1.48499 * 109.46809 * 209.99805 * 19 17 15 22 22 H 1.48492 * 109.47042 * 330.00095 * 19 17 15 23 23 S 1.70620 * 124.52562 * 180.34102 * 2 1 3 24 24 H 1.08999 * 109.46920 * 90.00971 * 1 2 3 25 25 H 1.09000 * 109.47052 * 210.00244 * 1 2 3 26 26 H 1.08997 * 109.47316 * 330.00830 * 1 2 3 27 27 H 1.08004 * 122.45033 * 0.04449 * 3 2 1 28 28 H 1.09000 * 109.46944 * 269.97690 * 5 4 3 29 29 H 1.08996 * 109.47298 * 29.97726 * 5 4 3 30 30 H 1.09003 * 109.47252 * 149.97772 * 5 4 3 31 31 H 0.96999 * 120.00250 * 0.02562 * 9 7 6 32 32 H 1.08996 * 109.47000 * 300.00248 * 13 10 9 33 33 H 1.09006 * 109.46904 * 59.99979 * 13 10 9 34 34 H 1.08993 * 109.47317 * 300.00064 * 14 13 10 35 35 H 1.08998 * 109.47275 * 60.00757 * 14 13 10 36 36 H 0.97002 * 119.99717 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1026 0.0000 4 6 3.6215 0.8776 -0.0006 5 6 4.6448 1.9839 -0.0001 6 6 3.9493 -0.4490 -0.0005 7 6 5.3124 -0.9881 -0.0015 8 8 6.2659 -0.2318 -0.0021 9 7 5.5097 -2.3213 -0.0007 10 16 7.0497 -2.9304 -0.0013 11 8 6.8691 -4.3397 -0.0260 12 8 7.6931 -2.2553 -1.0734 13 6 7.7446 -2.4055 1.5900 14 6 9.1825 -2.9139 1.7111 15 6 9.7600 -2.4774 3.0328 16 1 9.1611 -1.8958 3.7182 17 6 11.0529 -2.8203 3.3673 18 7 11.5567 -2.4397 4.5209 19 14 12.0885 -3.8267 2.1822 20 1 12.8292 -2.9143 1.2745 21 1 13.0545 -4.6540 2.9488 22 1 11.2050 -4.7117 1.3816 23 16 2.4740 -1.4057 -0.0084 24 1 -0.3633 -0.0002 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5137 27 1 1.8428 2.0965 0.0007 28 1 4.8915 2.2510 -1.0276 29 1 4.2383 2.8547 0.5141 30 1 5.5449 1.6460 0.5136 31 1 4.7497 -2.9241 0.0001 32 1 7.7374 -1.3172 1.6483 33 1 7.1446 -2.8168 2.4019 34 1 9.1892 -4.0023 1.6530 35 1 9.7828 -2.5030 0.8994 36 1 12.4662 -2.6813 4.7564 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870270379.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:52 Heat of formation + Delta-G solvation = -88.256559 kcal Electronic energy + Delta-G solvation = -21873.918212 eV Core-core repulsion = 18383.868939 eV Total energy + Delta-G solvation = -3490.049273 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.32631 -38.39756 -36.84470 -35.77233 -34.58570 -33.95551 -33.07071 -31.49663 -28.77343 -27.90364 -26.00219 -22.98302 -22.35321 -21.31399 -19.96081 -19.26651 -18.13398 -17.69064 -16.96377 -16.48755 -15.97275 -15.41612 -15.18575 -15.09860 -14.43477 -14.30628 -14.23994 -13.69727 -13.43417 -13.38856 -13.31197 -12.81394 -12.48386 -12.13991 -12.04333 -11.95787 -11.92081 -11.87739 -11.76221 -11.29022 -11.23874 -11.21605 -10.95508 -10.43915 -10.35962 -10.09958 -9.64224 -9.35383 -9.03326 -8.75647 -8.64927 -6.15101 -4.16507 0.08381 0.35417 1.07551 1.49133 1.92647 2.53111 2.71897 3.28446 3.35286 3.38940 3.87083 4.15041 4.28022 4.37128 4.50704 4.70671 4.75949 4.87925 5.01382 5.03550 5.16274 5.28772 5.41249 5.46968 5.53514 5.56455 5.65026 5.77523 6.01515 6.24474 6.25973 6.52281 6.80173 6.93018 7.35545 7.54574 8.37666 8.86038 9.43987 10.97241 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.023836 B = 0.003408 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.406977 B = 8214.953429 C = 8639.644874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.183 4.183 3 C -0.157 4.157 4 C 0.001 3.999 5 C -0.113 4.113 6 C -0.290 4.290 7 C 0.615 3.385 8 O -0.477 6.477 9 N -1.057 6.057 10 S 2.564 3.436 11 O -0.951 6.951 12 O -0.934 6.934 13 C -0.568 4.568 14 C -0.005 4.005 15 C -0.518 4.518 16 H 0.079 0.921 17 C 0.072 3.928 18 N -0.895 5.895 19 Si 0.869 3.131 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.262 1.262 23 S 0.200 5.800 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.147 0.853 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.425 0.575 32 H 0.138 0.862 33 H 0.129 0.871 34 H 0.034 0.966 35 H 0.031 0.969 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.552 5.125 -9.373 26.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.302 4.302 3 C -0.188 4.188 4 C -0.014 4.014 5 C -0.171 4.171 6 C -0.412 4.412 7 C 0.402 3.598 8 O -0.350 6.350 9 N -0.817 5.817 10 S 2.664 3.336 11 O -0.942 6.942 12 O -0.925 6.925 13 C -0.702 4.702 14 C -0.045 4.045 15 C -0.558 4.558 16 H 0.097 0.903 17 C -0.130 4.130 18 N -0.533 5.533 19 Si 0.696 3.304 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.186 1.186 23 S 0.469 5.531 24 H 0.098 0.902 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.165 0.835 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.115 0.885 31 H 0.259 0.741 32 H 0.157 0.843 33 H 0.147 0.853 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -23.680 3.587 -10.026 25.964 hybrid contribution 0.232 0.999 0.085 1.029 sum -23.448 4.586 -9.941 25.878 Atomic orbital electron populations 1.20435 0.87122 1.03751 1.03270 1.24239 1.01620 0.97738 1.06647 1.19881 0.92004 0.99828 1.07080 1.19582 0.94967 0.93322 0.93535 1.20846 0.98027 0.94728 1.03538 1.24174 0.96417 0.97757 1.22851 1.16756 0.88119 0.80946 0.73973 1.90988 1.41643 1.56547 1.45837 1.55323 1.30418 1.14647 1.81300 1.06761 0.72930 0.74342 0.79561 1.93601 1.83729 1.28712 1.88161 1.93607 1.72557 1.74984 1.51303 1.30181 1.10328 1.12935 1.16768 1.19439 0.87397 0.97012 1.00640 1.20814 0.98875 1.35622 1.00446 0.90296 1.24972 0.97526 0.95365 0.95177 1.69878 1.16011 1.45821 1.21557 0.86923 0.80832 0.81097 0.81591 1.19587 1.20736 1.18627 1.82940 0.93888 1.07410 1.68868 0.90174 0.90853 0.90052 0.83530 0.90100 0.91197 0.88463 0.74078 0.84347 0.85307 0.94821 0.95060 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.40 10.31 36.00 0.37 -0.03 16 2 C -0.18 -1.39 6.28 -35.86 -0.23 -1.61 16 3 C -0.16 -1.32 9.82 -41.41 -0.41 -1.73 16 4 C 0.00 0.01 5.90 -105.47 -0.62 -0.61 16 5 C -0.11 -1.18 9.55 36.01 0.34 -0.83 16 6 C -0.29 -3.44 6.45 -36.79 -0.24 -3.68 16 7 C 0.61 8.98 7.51 -12.90 -0.10 8.88 16 8 O -0.48 -8.32 12.34 -11.93 -0.15 -8.47 16 9 N -1.06 -14.48 5.60 30.24 0.17 -14.31 16 10 S 2.56 45.80 5.11 -107.50 -0.55 45.25 16 11 O -0.95 -18.16 18.08 -57.54 -1.04 -19.20 16 12 O -0.93 -19.72 17.04 -64.79 -1.10 -20.82 16 13 C -0.57 -11.00 5.82 37.16 0.22 -10.78 16 14 C -0.01 -0.13 4.05 -27.88 -0.11 -0.24 16 15 C -0.52 -14.71 9.66 -34.44 -0.33 -15.04 16 16 H 0.08 2.35 7.99 -52.48 -0.42 1.93 16 17 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 18 N -0.89 -27.28 13.96 55.43 0.77 -26.50 16 19 Si 0.87 21.66 27.47 -169.99 -4.67 16.99 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 22 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 23 S 0.20 1.70 22.10 -107.50 -2.38 -0.68 16 24 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.15 0.91 8.06 -52.48 -0.42 0.48 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.10 1.24 6.01 -51.93 -0.31 0.93 16 31 H 0.42 4.34 7.90 -34.48 -0.27 4.07 16 32 H 0.14 2.65 7.19 -51.93 -0.37 2.28 16 33 H 0.13 2.17 8.14 -51.92 -0.42 1.75 16 34 H 0.03 0.80 7.20 -51.93 -0.37 0.42 16 35 H 0.03 0.75 7.57 -51.93 -0.39 0.36 16 36 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 332.36 15.07 5.01 5.01 Total: -1.00 -35.97 332.36 -9.40 -45.38 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -4.27 Total: 1.01 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: -1.20 Total: -23.66 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.94 Total: -40.82 kcal Atomic # 8 Polarization: -46.20 SS G_CDS: -2.29 Total: -48.49 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Atomic # 16 Polarization: 47.50 SS G_CDS: -2.93 Total: 44.58 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.97 -9.40 -45.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870270379.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.877 kcal (2) G-P(sol) polarization free energy of solvation -35.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds