Wall clock time and date at job start Tue Mar 31 2020 12:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.50701 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.33820 * 124.51876 * 89.72068 * 4 3 2 6 6 C 1.37474 * 115.09735 * 179.85358 * 5 4 3 7 7 C 1.36650 * 113.29956 * 0.42504 * 6 5 4 8 8 C 1.46576 * 125.46032 * 179.80866 * 7 6 5 9 9 O 1.21698 * 120.00275 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00213 * 179.97438 * 8 7 6 11 11 S 1.65591 * 120.00231 * 180.02562 * 10 8 7 12 12 O 1.42097 * 104.27903 * 181.06971 * 11 10 8 13 13 O 1.42097 * 104.27922 * 308.92516 * 11 10 8 14 14 C 1.81402 * 104.45312 * 64.99953 * 11 10 8 15 15 C 1.50697 * 109.47256 * 180.02562 * 14 11 10 16 16 H 1.08004 * 119.99844 * 359.97438 * 15 14 11 17 17 C 1.37874 * 120.00038 * 179.97438 * 15 14 11 18 18 N 1.31523 * 119.99946 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00298 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47215 * 90.00000 * 19 17 15 21 21 H 1.48497 * 109.47323 * 209.99890 * 19 17 15 22 22 H 1.48503 * 109.47080 * 330.00230 * 19 17 15 23 23 S 1.70617 * 124.52302 * 270.02574 * 4 3 2 24 24 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 25 25 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 26 26 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 28 28 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 29 29 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 30 30 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 31 31 H 1.08001 * 122.45390 * 0.02562 * 5 4 3 32 32 H 1.08005 * 123.34852 * 180.20343 * 6 5 4 33 33 H 0.97009 * 119.99659 * 359.97438 * 10 8 7 34 34 H 1.09007 * 109.46499 * 300.00238 * 14 11 10 35 35 H 1.08998 * 109.47102 * 59.99727 * 14 11 10 36 36 H 0.96999 * 119.99494 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3058 1.4368 -1.1016 6 6 5.6619 1.4410 -0.8760 7 6 5.9891 1.4410 0.4507 8 6 7.3519 1.4410 0.9904 9 8 8.3058 1.4406 0.2346 10 7 7.5487 1.4415 2.3237 11 16 9.0883 1.4421 2.9335 12 8 8.9072 1.4168 4.3426 13 8 9.7331 0.3708 2.2584 14 6 9.7821 3.0342 2.4095 15 6 11.1985 3.1540 2.9098 16 1 11.6373 2.3527 3.4859 17 6 11.9342 4.2866 2.6323 18 7 11.4000 5.2621 1.9304 19 14 13.6897 4.4355 3.2531 20 1 14.6222 3.8823 2.2384 21 1 14.0104 5.8655 3.4927 22 1 13.8321 3.6769 4.5218 23 16 4.5134 1.4419 1.4068 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.8838 1.4322 -2.0957 32 1 6.3957 1.4406 -1.6686 33 1 6.7884 1.4422 2.9262 34 1 9.7754 3.0928 1.3210 35 1 9.1813 3.8454 2.8206 36 1 11.9175 6.0590 1.7354 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870351668.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:29 Heat of formation + Delta-G solvation = -98.562779 kcal Electronic energy + Delta-G solvation = -21469.434728 eV Core-core repulsion = 17978.938544 eV Total energy + Delta-G solvation = -3490.496184 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -39.86006 -38.18567 -36.26491 -35.22463 -35.17667 -34.17270 -33.35082 -30.63978 -29.06140 -27.31620 -24.24628 -23.54804 -22.39782 -21.83240 -19.84725 -18.98771 -18.26646 -17.33321 -16.53910 -16.24126 -15.75501 -15.50126 -15.27520 -14.91578 -14.60887 -14.24761 -14.20404 -13.99339 -13.52462 -12.97277 -12.69843 -12.54337 -12.25082 -12.11316 -11.92429 -11.76685 -11.59590 -11.46753 -11.31215 -11.25803 -11.21312 -10.99903 -10.90868 -10.66907 -10.54036 -10.20909 -9.82513 -9.18950 -8.88603 -8.78754 -8.70269 -6.32568 -4.43952 0.27659 1.00314 1.23156 1.66574 2.15688 2.98093 3.14329 3.23123 3.28448 3.33674 4.21661 4.26562 4.39081 4.54187 4.61485 4.62792 4.92357 4.98417 5.06886 5.12882 5.15874 5.19572 5.29028 5.36985 5.39178 5.64282 5.68867 5.81161 5.86244 5.94720 6.17281 6.57284 6.75411 6.93427 7.41800 7.66241 7.74667 8.57080 9.23364 10.79227 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.029703 B = 0.003016 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.438956 B = 9280.114301 C = 9610.110716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.052 4.052 4 C -0.189 4.189 5 C -0.153 4.153 6 C -0.043 4.043 7 C -0.271 4.271 8 C 0.611 3.389 9 O -0.475 6.475 10 N -1.058 6.058 11 S 2.553 3.447 12 O -0.966 6.966 13 O -0.949 6.949 14 C -0.402 4.402 15 C -0.535 4.535 16 H 0.071 0.929 17 C 0.077 3.923 18 N -0.877 5.877 19 Si 0.908 3.092 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.266 1.266 23 S 0.205 5.795 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.145 0.855 32 H 0.158 0.842 33 H 0.420 0.580 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.189 -5.938 -4.603 23.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.091 4.091 4 C -0.309 4.309 5 C -0.184 4.184 6 C -0.077 4.077 7 C -0.393 4.393 8 C 0.397 3.603 9 O -0.348 6.348 10 N -0.817 5.817 11 S 2.656 3.344 12 O -0.957 6.957 13 O -0.940 6.940 14 C -0.539 4.539 15 C -0.574 4.574 16 H 0.089 0.911 17 C -0.129 4.129 18 N -0.513 5.513 19 Si 0.733 3.267 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.191 1.191 23 S 0.474 5.526 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.163 0.837 32 H 0.175 0.825 33 H 0.254 0.746 34 H 0.118 0.882 35 H 0.104 0.896 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.436 -6.525 -3.173 22.631 hybrid contribution 0.570 0.756 -1.322 1.626 sum -20.866 -5.769 -4.494 22.110 Atomic orbital electron populations 1.21778 0.95267 1.01997 1.01983 1.21577 0.95988 0.95478 1.02918 1.20274 0.86962 0.98153 1.03733 1.24284 1.01159 1.07663 0.97786 1.19965 0.92472 1.06283 0.99652 1.20849 0.96386 0.95235 0.95182 1.24553 0.96621 1.19853 0.98314 1.16763 0.87891 0.74353 0.81323 1.91038 1.41435 1.45303 1.57011 1.55479 1.30833 1.81097 1.14268 1.07211 0.72266 0.80815 0.74146 1.93522 1.83736 1.88909 1.29500 1.93533 1.72183 1.53228 1.75017 1.27602 1.06935 1.10773 1.08640 1.20283 0.94642 1.05204 1.37308 0.91069 1.24927 0.99182 0.94824 0.94014 1.69964 1.37591 1.06942 1.36762 0.86324 0.82900 0.77706 0.79739 1.19814 1.20588 1.19055 1.82961 0.94054 1.68005 1.07604 0.92555 0.92559 0.92424 0.91396 0.91591 0.90455 0.89648 0.83692 0.82465 0.74632 0.88248 0.89571 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.15 0.37 -0.37 16 2 C -0.12 -0.72 5.92 -26.74 -0.16 -0.87 16 3 C -0.05 -0.33 5.64 -27.88 -0.16 -0.49 16 4 C -0.19 -1.69 5.53 -35.86 -0.20 -1.89 16 5 C -0.15 -1.46 10.00 -41.41 -0.41 -1.87 16 6 C -0.04 -0.53 10.01 -40.43 -0.40 -0.93 16 7 C -0.27 -3.78 6.45 -36.79 -0.24 -4.02 16 8 C 0.61 10.92 7.52 -12.90 -0.10 10.83 16 9 O -0.48 -10.26 14.94 -11.94 -0.18 -10.44 16 10 N -1.06 -18.34 5.60 30.24 0.17 -18.17 16 11 S 2.55 56.74 5.03 -107.50 -0.54 56.20 16 12 O -0.97 -22.36 18.08 -57.54 -1.04 -23.40 16 13 O -0.95 -24.00 17.04 -64.79 -1.10 -25.10 16 14 C -0.40 -10.16 5.64 36.00 0.20 -9.96 16 15 C -0.53 -15.11 9.13 -34.44 -0.31 -15.42 16 16 H 0.07 1.96 7.71 -52.48 -0.40 1.55 16 17 C 0.08 2.17 5.46 -17.82 -0.10 2.07 16 18 N -0.88 -25.25 13.29 55.43 0.74 -24.52 16 19 Si 0.91 21.27 29.54 -169.99 -5.02 16.25 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 23 S 0.21 2.10 22.10 -107.50 -2.38 -0.27 16 24 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.16 1.85 8.06 -52.48 -0.42 1.43 16 33 H 0.42 5.66 7.90 -34.47 -0.27 5.39 16 34 H 0.10 2.62 7.19 -51.92 -0.37 2.25 16 35 H 0.09 2.09 8.14 -51.92 -0.42 1.67 16 36 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 340.50 15.07 5.13 5.13 Total: -1.00 -35.34 340.50 -10.14 -45.48 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -4.41 Total: 1.76 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: -1.51 Total: -22.92 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: 0.91 Total: -42.68 kcal Atomic # 8 Polarization: -56.63 SS G_CDS: -2.32 Total: -58.95 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 58.84 SS G_CDS: -2.92 Total: 55.92 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.34 -10.14 -45.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870351668.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.080 kcal (2) G-P(sol) polarization free energy of solvation -35.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds