Wall clock time and date at job start Tue Mar 31 2020 12:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.50701 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.33820 * 124.51876 * 89.72068 * 4 3 2 6 6 C 1.37474 * 115.09735 * 179.85358 * 5 4 3 7 7 C 1.36650 * 113.29956 * 0.42504 * 6 5 4 8 8 C 1.46576 * 125.46032 * 179.80866 * 7 6 5 9 9 O 1.21698 * 120.00275 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00213 * 179.97438 * 8 7 6 11 11 S 1.65591 * 120.00231 * 180.02562 * 10 8 7 12 12 O 1.42097 * 104.27903 * 181.06971 * 11 10 8 13 13 O 1.42097 * 104.27922 * 308.92516 * 11 10 8 14 14 C 1.81402 * 104.45312 * 64.99953 * 11 10 8 15 15 C 1.50697 * 109.47256 * 180.02562 * 14 11 10 16 16 H 1.08004 * 119.99844 * 359.97438 * 15 14 11 17 17 C 1.37874 * 120.00038 * 179.97438 * 15 14 11 18 18 N 1.31523 * 119.99946 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00298 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47215 * 90.00000 * 19 17 15 21 21 H 1.48497 * 109.47323 * 209.99890 * 19 17 15 22 22 H 1.48503 * 109.47080 * 330.00230 * 19 17 15 23 23 S 1.70617 * 124.52302 * 270.02574 * 4 3 2 24 24 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 25 25 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 26 26 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 28 28 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 29 29 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 30 30 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 31 31 H 1.08001 * 122.45390 * 0.02562 * 5 4 3 32 32 H 1.08005 * 123.34852 * 180.20343 * 6 5 4 33 33 H 0.97009 * 119.99659 * 359.97438 * 10 8 7 34 34 H 1.09007 * 109.46499 * 300.00238 * 14 11 10 35 35 H 1.08998 * 109.47102 * 59.99727 * 14 11 10 36 36 H 0.96999 * 119.99494 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3058 1.4368 -1.1016 6 6 5.6619 1.4410 -0.8760 7 6 5.9891 1.4410 0.4507 8 6 7.3519 1.4410 0.9904 9 8 8.3058 1.4406 0.2346 10 7 7.5487 1.4415 2.3237 11 16 9.0883 1.4421 2.9335 12 8 8.9072 1.4168 4.3426 13 8 9.7331 0.3708 2.2584 14 6 9.7821 3.0342 2.4095 15 6 11.1985 3.1540 2.9098 16 1 11.6373 2.3527 3.4859 17 6 11.9342 4.2866 2.6323 18 7 11.4000 5.2621 1.9304 19 14 13.6897 4.4355 3.2531 20 1 14.6222 3.8823 2.2384 21 1 14.0104 5.8655 3.4927 22 1 13.8321 3.6769 4.5218 23 16 4.5134 1.4419 1.4068 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.8838 1.4322 -2.0957 32 1 6.3957 1.4406 -1.6686 33 1 6.7884 1.4422 2.9262 34 1 9.7754 3.0928 1.3210 35 1 9.1813 3.8454 2.8206 36 1 11.9175 6.0590 1.7354 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870351668.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:24 Heat of formation + Delta-G solvation = -123.493249 kcal Electronic energy + Delta-G solvation = -21470.515794 eV Core-core repulsion = 17978.938544 eV Total energy + Delta-G solvation = -3491.577250 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 317.059 amu Computer time = 3.38 seconds Orbital eigenvalues (eV) -41.26180 -39.05802 -38.16631 -37.12939 -35.82659 -35.69980 -35.44683 -31.40078 -31.13066 -28.14499 -25.67282 -25.02297 -23.55390 -22.33149 -21.21465 -20.47638 -19.32133 -19.22461 -18.38260 -17.59552 -17.27387 -16.74751 -16.51245 -16.32356 -16.07885 -15.82491 -15.11300 -14.70812 -14.54639 -14.27330 -14.17026 -13.88376 -13.54423 -13.51790 -13.35706 -13.26621 -13.16869 -12.76382 -12.75293 -12.57412 -12.37730 -12.19321 -12.06397 -11.98661 -11.86525 -11.63484 -11.49421 -11.14451 -10.81192 -9.77941 -9.60639 -8.44536 -6.64429 -0.84364 -0.68935 0.34418 0.81046 1.11712 1.36488 1.39532 1.48589 1.51543 1.84789 2.28803 2.67949 2.89016 3.09742 3.36583 3.64568 3.81408 4.06886 4.17476 4.24701 4.37542 4.59563 4.62642 4.70710 4.73024 4.87170 4.98413 4.99691 5.08232 5.23566 5.26520 5.30201 5.39229 5.48107 5.55252 5.65698 6.28567 6.45266 7.07487 8.68643 Molecular weight = 317.06amu Principal moments of inertia in cm(-1) A = 0.029703 B = 0.003016 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.438956 B = 9280.114301 C = 9610.110716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.053 4.053 4 C -0.167 4.167 5 C -0.161 4.161 6 C -0.034 4.034 7 C -0.320 4.320 8 C 0.609 3.391 9 O -0.524 6.524 10 N -1.045 6.045 11 S 2.598 3.402 12 O -0.973 6.973 13 O -0.980 6.980 14 C -0.418 4.418 15 C -0.569 4.569 16 H 0.070 0.930 17 C 0.024 3.976 18 N -0.908 5.908 19 Si 0.970 3.030 20 H -0.266 1.266 21 H -0.266 1.266 22 H -0.258 1.258 23 S 0.238 5.762 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.174 0.826 32 H 0.153 0.847 33 H 0.438 0.562 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.357 -6.041 -4.509 25.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.092 4.092 4 C -0.288 4.288 5 C -0.190 4.190 6 C -0.069 4.069 7 C -0.441 4.441 8 C 0.398 3.602 9 O -0.400 6.400 10 N -0.808 5.808 11 S 2.699 3.301 12 O -0.964 6.964 13 O -0.970 6.970 14 C -0.553 4.553 15 C -0.607 4.607 16 H 0.088 0.912 17 C -0.179 4.179 18 N -0.545 5.545 19 Si 0.792 3.208 20 H -0.191 1.191 21 H -0.190 1.190 22 H -0.182 1.182 23 S 0.507 5.493 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.122 0.878 31 H 0.191 0.809 32 H 0.170 0.830 33 H 0.276 0.724 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -23.626 -6.616 -3.045 24.723 hybrid contribution 1.002 0.763 -1.409 1.890 sum -22.624 -5.853 -4.454 23.790 Atomic orbital electron populations 1.21765 0.94309 1.02283 1.02522 1.21569 0.96793 0.94905 1.02621 1.20454 0.84663 0.98844 1.05260 1.24775 1.02564 1.04470 0.96970 1.20148 0.91077 1.06523 1.01269 1.21084 0.97813 0.93549 0.94483 1.24262 0.95868 1.24247 0.99768 1.17333 0.89281 0.72900 0.80669 1.91004 1.43383 1.47808 1.57787 1.54932 1.29961 1.80968 1.14926 1.05565 0.72622 0.78637 0.73304 1.93502 1.84372 1.88527 1.29973 1.93489 1.74077 1.53663 1.75774 1.27643 1.06600 1.13679 1.07389 1.20724 0.96372 1.05713 1.37939 0.91186 1.25911 1.03655 0.94359 0.93975 1.70049 1.39380 1.07512 1.37513 0.85371 0.77448 0.78531 0.79489 1.19133 1.19019 1.18195 1.82808 0.91863 1.67237 1.07380 0.92192 0.91870 0.92338 0.91527 0.92174 0.89306 0.87791 0.80874 0.82956 0.72359 0.90239 0.89415 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 71.98 0.71 -0.30 16 2 C -0.12 -1.05 5.92 30.59 0.18 -0.87 16 3 C -0.05 -0.47 5.64 29.85 0.17 -0.31 16 4 C -0.17 -2.50 5.53 24.68 0.14 -2.36 16 5 C -0.16 -2.66 10.00 21.08 0.21 -2.45 16 6 C -0.03 -0.82 10.01 21.72 0.22 -0.60 16 7 C -0.32 -8.83 6.45 24.07 0.16 -8.67 16 8 C 0.61 22.40 7.52 86.42 0.65 23.05 16 9 O -0.52 -23.80 14.94 12.04 0.18 -23.62 16 10 N -1.04 -36.71 5.60 -176.46 -0.99 -37.70 16 11 S 2.60 118.06 5.03 -56.49 -0.28 117.78 16 12 O -0.97 -45.05 18.08 -127.65 -2.31 -47.36 16 13 O -0.98 -50.86 17.04 -120.72 -2.06 -52.91 16 14 C -0.42 -21.96 5.64 71.23 0.40 -21.56 16 15 C -0.57 -32.98 9.13 25.60 0.23 -32.74 16 16 H 0.07 3.94 7.71 -2.91 -0.02 3.92 16 17 C 0.02 1.39 5.46 84.65 0.46 1.85 16 18 N -0.91 -53.33 13.29 21.45 0.28 -53.05 16 19 Si 0.97 43.63 29.54 68.60 2.03 45.65 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 22 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 23 S 0.24 4.42 22.10 -56.49 -1.25 3.17 16 24 H 0.06 0.36 8.14 -2.39 -0.02 0.35 16 25 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 32 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 33 H 0.44 11.63 7.90 -96.74 -0.76 10.86 16 34 H 0.08 4.45 7.19 -2.39 -0.02 4.44 16 35 H 0.09 4.45 8.14 -2.39 -0.02 4.43 16 36 H 0.28 14.91 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -77.61 340.50 -0.52 -78.13 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.34 Total: 14.85 kcal Atomic # 6 Polarization: -48.49 SS G_CDS: 3.53 Total: -44.96 kcal Atomic # 7 Polarization: -90.04 SS G_CDS: -0.70 Total: -90.75 kcal Atomic # 8 Polarization: -119.70 SS G_CDS: -4.18 Total: -123.89 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: 122.48 SS G_CDS: -1.53 Total: 120.95 kcal Total: -77.61 -0.52 -78.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870351668.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.359 kcal (2) G-P(sol) polarization free energy of solvation -77.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.39 seconds