Wall clock time and date at job start Tue Mar 31 2020 12:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38036 * 126.29302 * 2 1 4 4 C 1.47436 * 126.41450 * 359.97438 * 3 2 1 5 5 O 1.21602 * 120.00091 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99867 * 179.72839 * 4 3 2 7 7 C 1.46506 * 119.99968 * 180.02562 * 6 4 3 8 8 C 1.50700 * 109.46950 * 179.97438 * 7 6 4 9 9 C 1.31329 * 119.99877 * 124.99808 * 8 7 6 10 10 Cl 1.73606 * 120.00235 * 359.97438 * 9 8 7 11 11 Cl 1.73602 * 120.00296 * 179.97438 * 9 8 7 12 12 C 1.41286 * 107.17192 * 180.24871 * 3 2 1 13 13 N 1.30448 * 108.02337 * 359.61207 * 12 3 2 14 14 N 1.34259 * 126.28729 * 180.02562 * 2 1 3 15 15 C 1.46503 * 125.75762 * 359.97438 * 14 2 1 16 16 C 1.50696 * 109.46974 * 90.00112 * 15 14 2 17 17 H 1.08001 * 120.00163 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99873 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99984 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00024 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46911 * 59.99991 * 20 18 16 22 22 H 1.48493 * 109.47102 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46969 * 300.00135 * 20 18 16 24 24 H 1.09000 * 109.47568 * 89.97502 * 1 2 3 25 25 H 1.09002 * 109.47528 * 209.97528 * 1 2 3 26 26 H 1.08998 * 109.46953 * 329.97793 * 1 2 3 27 27 H 0.97004 * 120.00018 * 359.97438 * 6 4 3 28 28 H 1.09004 * 109.46587 * 299.99661 * 7 6 4 29 29 H 1.08993 * 109.47306 * 59.99553 * 7 6 4 30 30 H 1.07998 * 120.00362 * 304.99526 * 8 7 6 31 31 H 1.08000 * 125.99145 * 179.77305 * 12 3 2 32 32 H 1.09004 * 109.46911 * 210.00324 * 15 14 2 33 33 H 1.09002 * 109.46643 * 329.99944 * 15 14 2 34 34 H 0.96997 * 120.00146 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0015 6 7 2.7999 3.5106 0.0051 7 6 2.3644 4.9095 0.0051 8 6 3.5717 5.8114 0.0126 9 6 3.7120 6.7284 -0.9170 10 17 2.5070 6.9013 -2.1547 11 17 5.1024 7.7679 -0.9081 12 6 3.6589 0.6498 -0.0059 13 7 3.6340 -0.6545 -0.0007 14 7 2.3016 -1.0822 -0.0005 15 6 1.8500 -2.4759 -0.0006 16 6 1.6946 -2.9535 -1.4214 17 1 1.9103 -2.2855 -2.2423 18 6 1.2772 -4.2431 -1.6734 19 7 1.0141 -5.0563 -0.6739 20 14 1.0839 -4.8349 -3.4347 21 1 2.3894 -4.7369 -4.1358 22 1 0.6263 -6.2476 -3.4347 23 1 0.0820 -3.9905 -4.1335 24 1 -0.3634 0.0004 -1.0276 25 1 -0.3634 -0.8902 0.5134 26 1 -0.3633 0.8898 0.5142 27 1 3.7462 3.2972 0.0098 28 1 1.7699 5.1049 -0.8874 29 1 1.7618 5.1023 0.8925 30 1 4.3216 5.7036 0.7823 31 1 4.5448 1.2675 -0.0108 32 1 2.5848 -3.0960 0.5130 33 1 0.8915 -2.5472 0.5136 34 1 0.7200 -5.9635 -0.8511 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898310841.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:33 Heat of formation + Delta-G solvation = 10.916748 kcal Electronic energy + Delta-G solvation = -20831.587866 eV Core-core repulsion = 17238.211315 eV Total energy + Delta-G solvation = -3593.376552 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.044 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.29116 -40.18207 -38.53916 -37.59380 -36.42045 -35.79696 -33.99313 -33.29227 -32.65145 -29.42108 -28.35656 -26.87731 -25.23648 -23.29090 -21.71733 -21.24492 -20.43446 -18.85565 -18.55027 -17.97429 -16.94098 -16.71480 -16.45276 -16.10483 -15.98768 -15.35201 -15.25639 -14.71124 -14.40086 -14.27764 -14.05015 -13.68166 -13.62082 -13.55158 -13.11338 -13.05141 -12.95758 -12.68465 -12.50225 -12.29661 -12.24781 -12.03920 -11.87271 -11.71453 -10.89503 -10.75392 -10.29173 -10.25195 -9.98059 -9.41595 -8.37365 -6.53744 0.26699 0.34991 0.69879 1.32556 1.34729 1.39181 1.39904 1.48203 1.68736 2.32562 2.46802 2.56483 2.94915 3.73914 3.76375 3.85988 4.14612 4.17419 4.25298 4.41771 4.56223 4.65259 4.75235 4.81544 4.90817 4.97457 5.09027 5.19499 5.45254 5.49884 5.70237 5.75596 6.05797 6.55159 6.61410 6.87148 7.17324 7.35664 8.70287 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.023338 B = 0.002454 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.468391 B =11407.285744 C =11532.808670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.145 3.855 3 C -0.330 4.330 4 C 0.608 3.392 5 O -0.581 6.581 6 N -0.711 5.711 7 C 0.145 3.855 8 C -0.113 4.113 9 C -0.036 4.036 10 Cl -0.044 7.044 11 Cl -0.030 7.030 12 C 0.081 3.919 13 N -0.338 5.338 14 N -0.339 5.339 15 C 0.267 3.733 16 C -0.556 4.556 17 H 0.052 0.948 18 C 0.024 3.976 19 N -0.917 5.917 20 Si 0.970 3.030 21 H -0.273 1.273 22 H -0.273 1.273 23 H -0.267 1.267 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.103 0.897 27 H 0.415 0.585 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.181 0.819 31 H 0.229 0.771 32 H 0.031 0.969 33 H 0.050 0.950 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.118 24.315 1.691 25.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.009 3.991 3 C -0.345 4.345 4 C 0.397 3.603 5 O -0.462 6.462 6 N -0.364 5.364 7 C 0.021 3.979 8 C -0.133 4.133 9 C -0.090 4.090 10 Cl -0.016 7.016 11 Cl -0.001 7.001 12 C -0.106 4.106 13 N -0.157 5.157 14 N -0.116 5.116 15 C 0.149 3.851 16 C -0.594 4.594 17 H 0.070 0.930 18 C -0.177 4.177 19 N -0.555 5.555 20 Si 0.794 3.206 21 H -0.198 1.198 22 H -0.198 1.198 23 H -0.192 1.192 24 H 0.100 0.900 25 H 0.089 0.911 26 H 0.121 0.879 27 H 0.253 0.747 28 H 0.092 0.908 29 H 0.111 0.889 30 H 0.198 0.802 31 H 0.245 0.755 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.930 23.190 1.647 23.993 hybrid contribution -0.094 -0.011 -0.865 0.870 sum 5.836 23.179 0.782 23.915 Atomic orbital electron populations 1.20554 0.85969 1.04066 1.03879 1.21970 0.95914 0.86798 0.94401 1.19910 0.93281 0.92912 1.28435 1.17063 0.84974 0.83737 0.74493 1.90696 1.17963 1.84620 1.52900 1.45405 1.10242 1.04503 1.76273 1.20468 0.94152 0.79052 1.04188 1.23314 0.99652 0.93318 0.97012 1.24232 0.90052 0.99457 0.95278 1.98446 1.52854 1.96692 1.53635 1.98445 1.37581 1.66468 1.97634 1.24539 0.97665 0.91565 0.96850 1.77100 0.98275 1.14559 1.25769 1.49103 1.03437 1.07740 1.51331 1.19354 0.95283 0.72417 0.98075 1.21371 1.47999 0.98463 0.91614 0.92993 1.25719 0.93832 0.95948 1.02222 1.69985 1.44781 1.07606 1.33079 0.85421 0.78835 0.77677 0.78695 1.19805 1.19788 1.19175 0.90014 0.91138 0.87853 0.74748 0.90767 0.88908 0.80233 0.75490 0.95057 0.93177 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.13 9.57 71.24 0.68 -2.45 16 2 C 0.15 5.81 7.01 42.14 0.30 6.11 16 3 C -0.33 -11.16 6.13 -20.15 -0.12 -11.29 16 4 C 0.61 17.92 7.81 86.67 0.68 18.60 16 5 O -0.58 -20.49 14.84 -4.04 -0.06 -20.55 16 6 N -0.71 -13.69 5.54 -470.10 -2.60 -16.30 16 7 C 0.14 2.35 5.97 85.63 0.51 2.86 16 8 C -0.11 -1.19 9.37 25.32 0.24 -0.96 16 9 C -0.04 -0.47 6.97 67.46 0.47 0.00 16 10 Cl -0.04 -0.72 26.92 -2.72 -0.07 -0.79 16 11 Cl -0.03 -0.36 29.06 -2.72 -0.08 -0.44 16 12 C 0.08 2.52 11.50 85.65 0.99 3.50 16 13 N -0.34 -14.10 12.50 -56.28 -0.70 -14.80 16 14 N -0.34 -15.40 3.56 -336.70 -1.20 -16.59 16 15 C 0.27 13.70 5.97 85.63 0.51 14.21 16 16 C -0.56 -30.50 9.39 25.60 0.24 -30.26 16 17 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 18 C 0.02 1.30 5.46 84.65 0.46 1.77 16 19 N -0.92 -51.11 13.29 21.45 0.28 -50.82 16 20 Si 0.97 42.46 29.54 68.60 2.03 44.48 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 24 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 25 H 0.07 2.53 7.05 -2.39 -0.02 2.51 16 26 H 0.10 3.49 6.50 -2.39 -0.02 3.47 16 27 H 0.42 5.47 7.42 -92.71 -0.69 4.78 16 28 H 0.07 1.46 6.01 -2.39 -0.01 1.44 16 29 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.18 0.94 8.06 -2.91 -0.02 0.92 16 31 H 0.23 4.26 7.50 -2.91 -0.02 4.24 16 32 H 0.03 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.05 2.57 7.02 -2.39 -0.02 2.56 16 34 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -66.73 331.81 3.01 -63.72 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 0.47 Total: 10.00 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 4.95 Total: 2.10 kcal Atomic # 7 Polarization: -94.30 SS G_CDS: -4.22 Total: -98.52 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.06 Total: -20.55 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.15 Total: -1.23 kcal Total: -66.73 3.01 -63.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898310841.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.638 kcal (2) G-P(sol) polarization free energy of solvation -66.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds