Wall clock time and date at job start Tue Mar 31 2020 11:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99798 * 2 1 4 4 H 1.48500 * 109.46729 * 269.99424 * 3 2 1 5 5 H 1.48501 * 109.47266 * 29.99366 * 3 2 1 6 6 H 1.48500 * 109.46951 * 149.99728 * 3 2 1 7 7 C 1.37872 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99651 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00221 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47190 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47100 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00029 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99727 * 180.02562 * 11 10 9 14 14 O 1.41602 * 120.00291 * 359.97438 * 13 11 10 15 15 C 1.46500 * 119.99777 * 179.97438 * 13 11 10 16 16 C 1.50706 * 109.46949 * 74.99538 * 15 13 11 17 17 C 1.38217 * 119.98796 * 269.71931 * 16 15 13 18 18 C 1.38353 * 120.01302 * 179.76612 * 17 16 15 19 19 Cl 1.73604 * 120.00920 * 180.27926 * 18 17 16 20 20 C 1.38327 * 119.98737 * 0.54085 * 18 17 16 21 21 C 1.38334 * 119.97451 * 359.71742 * 20 18 17 22 22 Cl 1.73595 * 120.00688 * 179.97438 * 21 20 18 23 23 C 1.38215 * 119.98370 * 90.00142 * 16 15 13 24 24 H 0.96998 * 120.00167 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47212 * 60.00377 * 9 7 2 26 26 H 1.08997 * 109.47279 * 299.99635 * 9 7 2 27 27 H 1.09001 * 109.47395 * 59.99742 * 10 9 7 28 28 H 1.09003 * 109.46903 * 299.99946 * 10 9 7 29 29 H 0.96706 * 113.99844 * 0.02562 * 14 13 11 30 30 H 1.09000 * 109.46609 * 314.99717 * 15 13 11 31 31 H 1.09000 * 109.47175 * 194.99512 * 15 13 11 32 32 H 1.08009 * 119.99089 * 0.02562 * 17 16 15 33 33 H 1.08000 * 120.01594 * 179.69947 * 20 18 17 34 34 H 1.08003 * 120.00001 * 359.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4918 -4.9672 0.0012 12 8 0.2790 -4.9672 0.0003 13 7 2.1658 -6.1344 0.0026 14 8 3.5818 -6.1344 0.0042 15 6 1.4333 -7.4031 0.0026 16 6 0.8651 -7.6550 -1.3703 17 6 -0.3995 -7.1972 -1.6893 18 6 -0.9197 -7.4240 -2.9511 19 17 -2.5051 -6.8426 -3.3540 20 6 -0.1785 -8.1188 -3.8899 21 6 1.0849 -8.5814 -3.5684 22 17 2.0156 -9.4540 -4.7457 23 6 1.6064 -8.3489 -2.3081 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8713 -3.6039 0.8922 28 1 2.8726 -3.6047 -0.8877 29 1 3.9751 -5.2509 0.0045 30 1 0.6215 -7.3539 0.7284 31 1 2.1110 -8.2139 0.2697 32 1 -0.9799 -6.6587 -0.9547 33 1 -0.5861 -8.3003 -4.8734 34 1 2.5928 -8.7100 -2.0570 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000904180394.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:29 Heat of formation + Delta-G solvation = -30.510893 kcal Electronic energy + Delta-G solvation = -21348.835096 eV Core-core repulsion = 17721.369356 eV Total energy + Delta-G solvation = -3627.465740 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.14854 -39.10363 -36.90612 -36.61175 -36.35200 -33.89760 -33.24043 -31.15712 -30.81102 -30.52850 -27.05304 -25.22248 -23.01205 -22.49991 -21.33706 -19.97847 -17.76663 -17.55208 -16.34741 -16.16516 -16.06095 -15.96954 -15.34490 -14.59307 -14.48095 -14.27030 -14.02256 -13.76823 -13.37506 -12.89062 -12.54086 -12.48624 -12.25582 -12.16635 -12.10933 -11.71974 -11.32476 -11.25845 -11.19436 -11.04372 -10.99097 -10.66413 -10.10580 -9.81107 -9.51255 -9.20535 -8.99174 -8.87310 -8.58414 -8.38660 -6.02874 -4.08047 0.72884 0.83816 1.63862 2.12508 2.13710 2.89008 3.29571 3.29844 3.36101 3.38016 4.26387 4.36757 4.47318 4.70269 4.85599 4.93019 5.00472 5.25567 5.32548 5.35912 5.47551 5.73781 5.80185 5.95091 5.97807 6.01275 6.15538 6.27448 6.36266 6.77337 7.64903 7.73549 7.82610 7.97090 8.24547 8.40611 8.99246 9.56252 11.07884 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.013981 B = 0.003396 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.226105 B = 8243.578143 C = 9051.704023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.531 4.531 8 H 0.056 0.944 9 C 0.041 3.959 10 C -0.139 4.139 11 C 0.500 3.500 12 O -0.510 6.510 13 N -0.481 5.481 14 O -0.339 6.339 15 C 0.183 3.817 16 C -0.090 4.090 17 C -0.069 4.069 18 C -0.028 4.028 19 Cl -0.055 7.055 20 C -0.099 4.099 21 C -0.032 4.032 22 Cl -0.063 7.063 23 C -0.085 4.085 24 H 0.262 0.738 25 H 0.025 0.975 26 H 0.026 0.974 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.394 0.606 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.155 0.845 33 H 0.142 0.858 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.933 -20.252 -4.989 21.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.074 0.926 9 C 0.003 3.997 10 C -0.179 4.179 11 C 0.291 3.709 12 O -0.384 6.384 13 N -0.260 5.260 14 O -0.234 6.234 15 C 0.063 3.937 16 C -0.092 4.092 17 C -0.088 4.088 18 C -0.055 4.055 19 Cl -0.026 7.026 20 C -0.118 4.118 21 C -0.059 4.059 22 Cl -0.034 7.034 23 C -0.104 4.104 24 H 0.071 0.929 25 H 0.043 0.957 26 H 0.044 0.956 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.242 0.758 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.172 0.828 33 H 0.160 0.840 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.956 -20.786 -5.104 21.492 hybrid contribution 0.836 1.519 -0.328 1.764 sum 2.792 -19.267 -5.432 20.212 Atomic orbital electron populations 1.69986 1.06060 1.26731 1.49829 1.25008 0.94827 0.99260 0.95129 0.86587 0.79778 0.83444 0.78129 1.20626 1.21169 1.19846 1.21172 0.92916 0.90893 1.51905 0.92564 1.18880 0.92961 0.89043 0.98812 1.21978 1.01367 0.91923 1.02594 1.21972 0.88887 0.84919 0.75105 1.90683 1.13373 1.85594 1.48729 1.49913 0.93244 1.06237 1.76595 1.88935 1.01761 1.33194 1.99479 1.20236 0.95532 0.85332 0.92635 1.20131 0.93768 0.98128 0.97191 1.21433 0.95426 0.96417 0.95496 1.20761 0.88827 1.00802 0.95122 1.98397 1.23066 1.87269 1.93822 1.20913 0.92817 0.98035 1.00055 1.20641 0.93211 1.00626 0.91453 1.98377 1.72719 1.74729 1.57588 1.21045 1.00215 0.98074 0.91053 0.92852 0.95650 0.95610 0.89732 0.89862 0.75839 0.88010 0.88071 0.82757 0.83980 0.84256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.53 -14.48 9.11 -34.44 -0.31 -14.79 16 8 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 9 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 10 C -0.14 -2.59 4.17 -27.88 -0.12 -2.70 16 11 C 0.50 8.87 7.60 -10.98 -0.08 8.78 16 12 O -0.51 -10.54 13.54 5.56 0.08 -10.46 16 13 N -0.48 -6.72 3.77 -61.47 -0.23 -6.96 16 14 O -0.34 -4.01 14.98 -11.47 -0.17 -4.18 16 15 C 0.18 2.11 5.85 -5.19 -0.03 2.08 16 16 C -0.09 -1.09 5.25 -104.64 -0.55 -1.64 16 17 C -0.07 -0.93 8.56 -39.55 -0.34 -1.27 16 18 C -0.03 -0.36 6.32 -39.51 -0.25 -0.61 16 19 Cl -0.05 -0.70 28.96 -51.86 -1.50 -2.20 16 20 C -0.10 -1.12 9.61 -39.51 -0.38 -1.50 16 21 C -0.03 -0.36 6.32 -39.50 -0.25 -0.61 16 22 Cl -0.06 -0.63 28.96 -51.86 -1.50 -2.13 16 23 C -0.08 -0.93 9.48 -39.54 -0.38 -1.30 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 26 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 27 H 0.08 1.40 7.93 -51.93 -0.41 0.98 16 28 H 0.08 1.41 7.94 -51.93 -0.41 1.00 16 29 H 0.39 3.67 7.09 45.56 0.32 3.99 16 30 H 0.10 1.15 7.84 -51.93 -0.41 0.74 16 31 H 0.10 0.90 8.08 -51.93 -0.42 0.48 16 32 H 0.15 2.30 6.78 -52.48 -0.36 1.94 16 33 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 LS Contribution 330.38 15.07 4.98 4.98 Total: -1.00 -32.07 330.38 -8.45 -40.52 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -2.91 Total: 1.27 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -2.90 Total: -11.05 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: 0.50 Total: -32.90 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.10 Total: -14.65 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -3.00 Total: -4.33 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.07 -8.45 -40.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904180394.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.013 kcal (2) G-P(sol) polarization free energy of solvation -32.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds