Wall clock time and date at job start Tue Mar 31 2020 11:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99798 * 2 1 4 4 H 1.48500 * 109.46729 * 269.99424 * 3 2 1 5 5 H 1.48501 * 109.47266 * 29.99366 * 3 2 1 6 6 H 1.48500 * 109.46951 * 149.99728 * 3 2 1 7 7 C 1.37872 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99651 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00221 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47190 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47100 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00029 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99727 * 180.02562 * 11 10 9 14 14 O 1.41602 * 120.00291 * 359.97438 * 13 11 10 15 15 C 1.46500 * 119.99777 * 179.97438 * 13 11 10 16 16 C 1.50706 * 109.46949 * 74.99538 * 15 13 11 17 17 C 1.38217 * 119.98796 * 269.71931 * 16 15 13 18 18 C 1.38353 * 120.01302 * 179.76612 * 17 16 15 19 19 Cl 1.73604 * 120.00920 * 180.27926 * 18 17 16 20 20 C 1.38327 * 119.98737 * 0.54085 * 18 17 16 21 21 C 1.38334 * 119.97451 * 359.71742 * 20 18 17 22 22 Cl 1.73595 * 120.00688 * 179.97438 * 21 20 18 23 23 C 1.38215 * 119.98370 * 90.00142 * 16 15 13 24 24 H 0.96998 * 120.00167 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47212 * 60.00377 * 9 7 2 26 26 H 1.08997 * 109.47279 * 299.99635 * 9 7 2 27 27 H 1.09001 * 109.47395 * 59.99742 * 10 9 7 28 28 H 1.09003 * 109.46903 * 299.99946 * 10 9 7 29 29 H 0.96706 * 113.99844 * 0.02562 * 14 13 11 30 30 H 1.09000 * 109.46609 * 314.99717 * 15 13 11 31 31 H 1.09000 * 109.47175 * 194.99512 * 15 13 11 32 32 H 1.08009 * 119.99089 * 0.02562 * 17 16 15 33 33 H 1.08000 * 120.01594 * 179.69947 * 20 18 17 34 34 H 1.08003 * 120.00001 * 359.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4918 -4.9672 0.0012 12 8 0.2790 -4.9672 0.0003 13 7 2.1658 -6.1344 0.0026 14 8 3.5818 -6.1344 0.0042 15 6 1.4333 -7.4031 0.0026 16 6 0.8651 -7.6550 -1.3703 17 6 -0.3995 -7.1972 -1.6893 18 6 -0.9197 -7.4240 -2.9511 19 17 -2.5051 -6.8426 -3.3540 20 6 -0.1785 -8.1188 -3.8899 21 6 1.0849 -8.5814 -3.5684 22 17 2.0156 -9.4540 -4.7457 23 6 1.6064 -8.3489 -2.3081 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8713 -3.6039 0.8922 28 1 2.8726 -3.6047 -0.8877 29 1 3.9751 -5.2509 0.0045 30 1 0.6215 -7.3539 0.7284 31 1 2.1110 -8.2139 0.2697 32 1 -0.9799 -6.6587 -0.9547 33 1 -0.5861 -8.3003 -4.8734 34 1 2.5928 -8.7100 -2.0570 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000904180394.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:28 Heat of formation + Delta-G solvation = -50.349688 kcal Electronic energy + Delta-G solvation = -21349.695371 eV Core-core repulsion = 17721.369356 eV Total energy + Delta-G solvation = -3628.326015 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.037 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.26684 -40.23850 -37.80835 -37.71899 -37.35111 -35.66311 -34.48034 -32.96457 -31.74556 -31.63800 -28.53239 -26.75623 -24.03931 -23.89932 -22.60387 -21.32333 -19.26677 -18.51474 -18.05260 -17.49084 -17.05952 -16.93646 -16.57730 -16.42977 -15.63268 -15.41235 -15.12022 -14.87277 -14.73355 -14.22682 -14.04490 -13.57252 -13.41956 -13.39733 -13.26741 -13.03911 -12.82623 -12.65735 -12.47019 -12.17319 -12.09839 -11.99902 -11.95451 -11.65180 -11.30883 -10.88342 -10.56016 -10.02431 -9.81501 -9.70623 -8.17538 -6.31062 -0.20533 -0.10169 0.72993 1.09560 1.19793 1.43626 1.45192 1.52982 1.55992 2.35955 2.42383 3.15861 3.16386 3.44391 3.85767 3.90275 3.97742 4.07621 4.26872 4.34889 4.47007 4.48625 4.56737 4.71595 4.90249 4.99880 5.11540 5.19862 5.28063 5.42039 5.50541 5.62075 5.85052 6.16848 6.75345 6.86693 7.08513 7.39420 8.94761 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.013981 B = 0.003396 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.226105 B = 8243.578143 C = 9051.704023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.969 3.031 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.254 1.254 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.047 3.953 10 C -0.128 4.128 11 C 0.498 3.502 12 O -0.551 6.551 13 N -0.471 5.471 14 O -0.327 6.327 15 C 0.179 3.821 16 C -0.094 4.094 17 C -0.085 4.085 18 C -0.041 4.041 19 Cl -0.063 7.063 20 C -0.097 4.097 21 C -0.034 4.034 22 Cl -0.048 7.048 23 C -0.076 4.076 24 H 0.262 0.738 25 H -0.017 1.017 26 H -0.013 1.013 27 H 0.112 0.888 28 H 0.107 0.893 29 H 0.406 0.594 30 H 0.099 0.901 31 H 0.137 0.863 32 H 0.132 0.868 33 H 0.157 0.843 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.093 -21.159 -5.322 22.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.178 1.178 7 C -0.580 4.580 8 H 0.096 0.904 9 C 0.009 3.991 10 C -0.168 4.168 11 C 0.288 3.712 12 O -0.429 6.429 13 N -0.247 5.247 14 O -0.224 6.224 15 C 0.060 3.940 16 C -0.096 4.096 17 C -0.105 4.105 18 C -0.068 4.068 19 Cl -0.034 7.034 20 C -0.116 4.116 21 C -0.061 4.061 22 Cl -0.019 7.019 23 C -0.096 4.096 24 H 0.071 0.929 25 H 0.001 0.999 26 H 0.005 0.995 27 H 0.131 0.869 28 H 0.125 0.875 29 H 0.257 0.743 30 H 0.117 0.883 31 H 0.155 0.845 32 H 0.150 0.850 33 H 0.175 0.825 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.168 -21.732 -5.438 22.990 hybrid contribution -0.104 1.707 -0.255 1.729 sum 5.064 -20.025 -5.693 21.425 Atomic orbital electron populations 1.70165 1.08233 1.27732 1.51460 1.26073 0.95650 1.03768 0.94719 0.85387 0.78810 0.78056 0.78408 1.19954 1.21394 1.17765 1.21709 0.94065 0.91541 1.50717 0.90439 1.18629 0.93526 0.92010 0.94935 1.21725 0.99941 0.90090 1.05043 1.21669 0.88323 0.85813 0.75346 1.90687 1.15029 1.86390 1.50781 1.49660 0.94491 1.05854 1.74664 1.88956 0.99751 1.34355 1.99368 1.20495 0.96158 0.84925 0.92437 1.20156 0.93271 0.98389 0.97760 1.21374 0.96354 0.97228 0.95529 1.20850 0.88843 1.01669 0.95401 1.98387 1.23729 1.87488 1.93824 1.21082 0.92927 0.97303 1.00322 1.20744 0.93123 1.00360 0.91910 1.98386 1.72218 1.74291 1.57025 1.21261 1.00791 0.97002 0.90501 0.92936 0.99895 0.99504 0.86949 0.87537 0.74325 0.88274 0.84533 0.85008 0.82497 0.81947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.12 13.29 21.45 0.28 -57.83 16 2 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 3 Si 0.97 43.24 29.54 68.60 2.03 45.27 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 6 H -0.25 -10.44 7.11 99.48 0.71 -9.73 16 7 C -0.54 -29.57 9.11 25.60 0.23 -29.34 16 8 H 0.08 3.80 7.74 -2.91 -0.02 3.78 16 9 C 0.05 2.45 4.26 29.85 0.13 2.58 16 10 C -0.13 -4.66 4.17 29.85 0.12 -4.53 16 11 C 0.50 17.49 7.60 87.66 0.67 18.16 16 12 O -0.55 -23.79 13.54 -3.01 -0.04 -23.83 16 13 N -0.47 -12.18 3.77 -466.78 -1.76 -13.94 16 14 O -0.33 -6.51 14.98 -38.79 -0.58 -7.09 16 15 C 0.18 3.80 5.85 85.63 0.50 4.31 16 16 C -0.09 -2.17 5.25 -19.87 -0.10 -2.27 16 17 C -0.09 -2.37 8.56 22.29 0.19 -2.18 16 18 C -0.04 -1.06 6.32 22.32 0.14 -0.92 16 19 Cl -0.06 -1.68 28.96 -2.72 -0.08 -1.76 16 20 C -0.10 -2.11 9.61 22.31 0.21 -1.90 16 21 C -0.03 -0.69 6.32 22.32 0.14 -0.55 16 22 Cl -0.05 -0.84 28.96 -2.72 -0.08 -0.92 16 23 C -0.08 -1.49 9.48 22.29 0.21 -1.28 16 24 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 25 H -0.02 -1.05 8.10 -2.39 -0.02 -1.07 16 26 H -0.01 -0.80 8.10 -2.39 -0.02 -0.82 16 27 H 0.11 3.43 7.93 -2.39 -0.02 3.41 16 28 H 0.11 3.35 7.94 -2.39 -0.02 3.33 16 29 H 0.41 5.92 7.09 -74.05 -0.53 5.39 16 30 H 0.10 2.19 7.84 -2.39 -0.02 2.17 16 31 H 0.14 1.92 8.08 -2.39 -0.02 1.91 16 32 H 0.13 4.25 6.78 -2.91 -0.02 4.23 16 33 H 0.16 2.86 8.06 -2.91 -0.02 2.83 16 34 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -72.08 330.38 3.30 -68.77 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 0.62 Total: 9.03 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: 2.91 Total: -17.70 kcal Atomic # 7 Polarization: -70.30 SS G_CDS: -1.48 Total: -71.78 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.62 Total: -30.92 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 17 Polarization: -2.52 SS G_CDS: -0.16 Total: -2.68 kcal Total: -72.08 3.30 -68.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904180394.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.425 kcal (2) G-P(sol) polarization free energy of solvation -72.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds