Wall clock time and date at job start Tue Mar 31 2020 11:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42101 * 114.64588 * 2 1 4 4 N 1.49353 * 108.33125 * 238.89691 * 2 1 3 5 5 C 1.32419 * 120.00161 * 62.46409 * 4 2 1 6 6 O 1.21539 * 119.99758 * 0.02562 * 5 4 2 7 7 C 1.50702 * 119.99927 * 179.97438 * 5 4 2 8 8 S 1.80996 * 109.47165 * 180.02562 * 7 5 4 9 9 C 1.76197 * 100.00019 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00150 * 0.02562 * 9 8 7 11 11 C 1.38806 * 119.99641 * 179.97438 * 9 8 7 12 12 N 1.31624 * 120.00339 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99413 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47245 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.46890 * 120.00296 * 13 11 9 16 16 H 1.48508 * 109.46866 * 239.99833 * 13 11 9 17 17 C 1.76195 * 108.33178 * 121.10687 * 2 1 3 18 18 C 1.38272 * 119.98561 * 269.72725 * 17 2 1 19 19 C 1.38224 * 120.04787 * 179.73091 * 18 17 2 20 20 C 1.38218 * 120.02525 * 0.54074 * 19 18 17 21 21 C 1.38439 * 119.97559 * 359.73389 * 20 19 18 22 22 F 1.35102 * 120.02593 * 180.02562 * 21 20 19 23 23 C 1.38176 * 119.98867 * 90.00270 * 17 2 1 24 24 H 1.09002 * 109.47124 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46975 * 59.99973 * 1 2 3 26 26 H 1.09004 * 109.47147 * 299.99937 * 1 2 3 27 27 H 1.09001 * 109.46992 * 300.00611 * 7 5 4 28 28 H 1.08997 * 109.46789 * 60.00178 * 7 5 4 29 29 H 0.97000 * 120.00130 * 179.97438 * 12 11 9 30 30 H 1.07995 * 119.97768 * 359.97438 * 18 17 2 31 31 H 1.08002 * 119.98403 * 180.27447 * 19 18 17 32 32 H 1.08007 * 120.01028 * 179.70542 * 20 19 18 33 33 H 1.07997 * 120.00870 * 0.02562 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.4066 1.2916 0.0000 4 7 2.2838 -0.7324 -1.2139 5 6 1.9888 -0.2725 -2.4201 6 8 1.3361 0.7458 -2.5394 7 6 2.4633 -1.0112 -3.6450 8 16 1.9047 -0.1394 -5.1295 9 6 2.5797 -1.1893 -6.3732 10 1 3.1425 -2.0670 -6.0918 11 6 2.3872 -0.8887 -7.7145 12 7 1.7009 0.1807 -8.0575 13 14 3.1023 -2.0023 -9.0330 14 1 3.8259 -3.1287 -8.3905 15 1 2.0046 -2.5363 -9.8786 16 1 4.0454 -1.2264 -9.8780 17 6 2.3682 -0.8641 1.4320 18 6 2.5910 -0.1767 2.6109 19 6 3.0204 -0.8541 3.7366 20 6 3.2383 -2.2179 3.6820 21 6 3.0211 -2.9063 2.5007 22 9 3.2332 -4.2394 2.4462 23 6 2.5855 -2.2275 1.3750 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 3.5522 -1.0601 -3.6407 28 1 2.0543 -2.0216 -3.6411 29 1 1.5667 0.3909 -8.9949 30 1 2.4256 0.8897 2.6532 31 1 3.1898 -0.3169 4.6581 32 1 3.5784 -2.7463 4.5604 33 1 2.4161 -2.7633 0.4528 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906343757.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:48 Heat of formation + Delta-G solvation = -40.318797 kcal Electronic energy + Delta-G solvation = -20938.298618 eV Core-core repulsion = 17326.867777 eV Total energy + Delta-G solvation = -3611.430841 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.034 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -49.47438 -39.74480 -39.13381 -36.53395 -33.18458 -32.32759 -32.19955 -31.27840 -29.73777 -29.00317 -25.39744 -24.34245 -23.59986 -21.35960 -19.17460 -17.88750 -17.59409 -17.09364 -16.93223 -16.51309 -16.23902 -16.13847 -15.92733 -14.71471 -14.66248 -14.44983 -14.31010 -13.98690 -13.87236 -13.49144 -13.42945 -13.24626 -12.80434 -12.53550 -12.42740 -12.06244 -11.79462 -11.27887 -10.99177 -10.93938 -10.66663 -10.23949 -10.00332 -9.62362 -9.58174 -9.54010 -9.49326 -8.97302 -8.09325 -6.38095 -6.11778 -3.80915 -0.87322 -0.09386 0.39590 2.24565 2.66203 2.80480 3.02879 3.28668 3.31274 3.37935 3.54127 3.69218 3.91996 4.09413 4.15288 4.26985 4.31102 4.47579 4.55997 4.66006 4.77227 5.08519 5.21963 5.23305 5.32990 5.36089 5.39584 5.51303 5.79504 6.01582 6.19499 6.46780 6.73453 7.70905 8.41448 8.46760 9.33635 10.95842 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.022743 B = 0.003049 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.838877 B = 9182.124107 C =10105.281532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.629 4.629 2 S 2.396 3.604 3 O -0.919 6.919 4 N -1.120 6.120 5 C 0.570 3.430 6 O -0.555 6.555 7 C -0.117 4.117 8 S -0.077 6.077 9 C -0.528 4.528 10 H 0.074 0.926 11 C 0.072 3.928 12 N -0.869 5.869 13 Si 0.918 3.082 14 H -0.271 1.271 15 H -0.281 1.281 16 H -0.281 1.281 17 C -0.543 4.543 18 C -0.039 4.039 19 C -0.103 4.103 20 C -0.096 4.096 21 C 0.088 3.912 22 F -0.128 7.128 23 C -0.048 4.048 24 H 0.134 0.866 25 H 0.154 0.846 26 H 0.125 0.875 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.266 0.734 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.920 -5.670 29.067 29.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.785 4.785 2 S 2.592 3.408 3 O -0.906 6.906 4 N -1.030 6.030 5 C 0.357 3.643 6 O -0.433 6.433 7 C -0.271 4.271 8 S 0.150 5.850 9 C -0.677 4.677 10 H 0.092 0.908 11 C -0.137 4.137 12 N -0.505 5.505 13 Si 0.745 3.255 14 H -0.196 1.196 15 H -0.207 1.207 16 H -0.207 1.207 17 C -0.639 4.639 18 C -0.059 4.059 19 C -0.122 4.122 20 C -0.114 4.114 21 C 0.067 3.933 22 F -0.106 7.106 23 C -0.068 4.068 24 H 0.153 0.847 25 H 0.172 0.828 26 H 0.144 0.856 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.076 0.924 30 H 0.168 0.832 31 H 0.168 0.832 32 H 0.167 0.833 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.270 -3.816 28.690 28.970 hybrid contribution 0.775 -2.176 -0.436 2.350 sum -0.495 -5.991 28.254 28.886 Atomic orbital electron populations 1.30215 1.23287 1.12151 1.12848 1.09648 0.79382 0.74024 0.77735 1.93491 1.72376 1.39593 1.85109 1.70691 1.58406 1.62827 1.11113 1.19499 0.76567 0.82473 0.85792 1.90841 1.40003 1.24293 1.88192 1.23239 1.04906 1.03191 0.95751 1.85299 1.71192 1.35913 0.92615 1.22914 1.39650 1.12644 0.92476 0.90769 1.24996 0.95116 0.95699 0.97898 1.70040 1.38049 1.24732 1.17640 0.86119 0.78706 0.80034 0.80642 1.19570 1.20669 1.20652 1.28334 1.18237 1.04085 1.13225 1.21045 0.93588 1.00722 0.90544 1.21156 0.98650 0.93410 0.99010 1.21610 0.97161 0.95332 0.97330 1.17664 1.02414 0.78307 0.94893 1.91578 1.92407 1.29694 1.96952 1.21102 0.94165 0.92425 0.99098 0.84745 0.82833 0.85613 0.88732 0.88635 0.92384 0.83175 0.83199 0.83335 0.81534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -5.59 10.54 101.05 1.06 -4.53 16 2 S 2.40 29.69 3.84 -107.50 -0.41 29.27 16 3 O -0.92 -15.59 17.32 -46.11 -0.80 -16.39 16 4 N -1.12 -18.32 9.69 30.51 0.30 -18.02 16 5 C 0.57 12.09 7.43 -12.02 -0.09 12.00 16 6 O -0.55 -13.08 13.97 -5.55 -0.08 -13.16 16 7 C -0.12 -2.68 6.23 36.01 0.22 -2.45 16 8 S -0.08 -2.19 20.57 -107.50 -2.21 -4.41 16 9 C -0.53 -15.67 9.50 30.94 0.29 -15.38 16 10 H 0.07 2.10 7.80 -52.49 -0.41 1.69 16 11 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 12 N -0.87 -26.88 13.22 55.49 0.73 -26.15 16 13 Si 0.92 22.06 29.55 -169.99 -5.02 17.03 16 14 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 C -0.54 -4.59 5.89 -39.59 -0.23 -4.83 16 18 C -0.04 -0.25 9.58 -39.57 -0.38 -0.63 16 19 C -0.10 -0.45 10.04 -39.59 -0.40 -0.85 16 20 C -0.10 -0.48 10.03 -39.51 -0.40 -0.87 16 21 C 0.09 0.65 7.30 -39.42 -0.29 0.36 16 22 F -0.13 -1.08 17.27 2.25 0.04 -1.04 16 23 C -0.05 -0.39 9.53 -39.52 -0.38 -0.77 16 24 H 0.13 0.83 8.14 -51.92 -0.42 0.41 16 25 H 0.15 1.81 6.99 -51.92 -0.36 1.45 16 26 H 0.13 0.65 8.14 -51.92 -0.42 0.23 16 27 H 0.09 2.10 8.14 -51.91 -0.42 1.67 16 28 H 0.10 1.99 8.14 -51.92 -0.42 1.57 16 29 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.15 0.69 7.98 -52.49 -0.42 0.27 16 31 H 0.15 0.19 8.06 -52.49 -0.42 -0.24 16 32 H 0.15 0.37 8.06 -52.48 -0.42 -0.06 16 33 H 0.17 1.29 7.75 -52.49 -0.41 0.88 16 LS Contribution 325.84 15.07 4.91 4.91 Total: -1.00 -40.59 325.84 -6.49 -47.08 By element: Atomic # 1 Polarization: 0.08 SS G_CDS: -3.27 Total: -3.19 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -0.67 Total: -15.94 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 1.03 Total: -44.17 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.88 Total: -29.55 kcal Atomic # 9 Polarization: -1.08 SS G_CDS: 0.04 Total: -1.04 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 27.49 SS G_CDS: -2.62 Total: 24.87 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -40.59 -6.49 -47.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906343757.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.758 kcal (2) G-P(sol) polarization free energy of solvation -40.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds