Wall clock time and date at job start Tue Mar 31 2020 11:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42101 * 114.64588 * 2 1 4 4 N 1.49353 * 108.33125 * 238.89691 * 2 1 3 5 5 C 1.32419 * 120.00161 * 62.46409 * 4 2 1 6 6 O 1.21539 * 119.99758 * 0.02562 * 5 4 2 7 7 C 1.50702 * 119.99927 * 179.97438 * 5 4 2 8 8 S 1.80996 * 109.47165 * 180.02562 * 7 5 4 9 9 C 1.76197 * 100.00019 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00150 * 0.02562 * 9 8 7 11 11 C 1.38806 * 119.99641 * 179.97438 * 9 8 7 12 12 N 1.31624 * 120.00339 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99413 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47245 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.46890 * 120.00296 * 13 11 9 16 16 H 1.48508 * 109.46866 * 239.99833 * 13 11 9 17 17 C 1.76195 * 108.33178 * 121.10687 * 2 1 3 18 18 C 1.38272 * 119.98561 * 269.72725 * 17 2 1 19 19 C 1.38224 * 120.04787 * 179.73091 * 18 17 2 20 20 C 1.38218 * 120.02525 * 0.54074 * 19 18 17 21 21 C 1.38439 * 119.97559 * 359.73389 * 20 19 18 22 22 F 1.35102 * 120.02593 * 180.02562 * 21 20 19 23 23 C 1.38176 * 119.98867 * 90.00270 * 17 2 1 24 24 H 1.09002 * 109.47124 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46975 * 59.99973 * 1 2 3 26 26 H 1.09004 * 109.47147 * 299.99937 * 1 2 3 27 27 H 1.09001 * 109.46992 * 300.00611 * 7 5 4 28 28 H 1.08997 * 109.46789 * 60.00178 * 7 5 4 29 29 H 0.97000 * 120.00130 * 179.97438 * 12 11 9 30 30 H 1.07995 * 119.97768 * 359.97438 * 18 17 2 31 31 H 1.08002 * 119.98403 * 180.27447 * 19 18 17 32 32 H 1.08007 * 120.01028 * 179.70542 * 20 19 18 33 33 H 1.07997 * 120.00870 * 0.02562 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.4066 1.2916 0.0000 4 7 2.2838 -0.7324 -1.2139 5 6 1.9888 -0.2725 -2.4201 6 8 1.3361 0.7458 -2.5394 7 6 2.4633 -1.0112 -3.6450 8 16 1.9047 -0.1394 -5.1295 9 6 2.5797 -1.1893 -6.3732 10 1 3.1425 -2.0670 -6.0918 11 6 2.3872 -0.8887 -7.7145 12 7 1.7009 0.1807 -8.0575 13 14 3.1023 -2.0023 -9.0330 14 1 3.8259 -3.1287 -8.3905 15 1 2.0046 -2.5363 -9.8786 16 1 4.0454 -1.2264 -9.8780 17 6 2.3682 -0.8641 1.4320 18 6 2.5910 -0.1767 2.6109 19 6 3.0204 -0.8541 3.7366 20 6 3.2383 -2.2179 3.6820 21 6 3.0211 -2.9063 2.5007 22 9 3.2332 -4.2394 2.4462 23 6 2.5855 -2.2275 1.3750 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 3.5522 -1.0601 -3.6407 28 1 2.0543 -2.0216 -3.6411 29 1 1.5667 0.3909 -8.9949 30 1 2.4256 0.8897 2.6532 31 1 3.1898 -0.3169 4.6581 32 1 3.5784 -2.7463 4.5604 33 1 2.4161 -2.7633 0.4528 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906343757.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:47 Heat of formation + Delta-G solvation = -71.356769 kcal Electronic energy + Delta-G solvation = -20939.644525 eV Core-core repulsion = 17326.867777 eV Total energy + Delta-G solvation = -3612.776748 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.034 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.04585 -40.81227 -40.14088 -37.68405 -34.62601 -34.52201 -32.74214 -31.80209 -30.98185 -30.35299 -27.67684 -24.95864 -24.15384 -22.65416 -20.20290 -19.50973 -18.84826 -18.20405 -17.54834 -17.42025 -17.16862 -17.00850 -16.87297 -16.74826 -16.08214 -15.89644 -15.62015 -14.97343 -14.59320 -14.46581 -14.38075 -14.26910 -13.84832 -13.60932 -13.52775 -13.19861 -13.13226 -12.93356 -12.89305 -12.60944 -12.05256 -11.74394 -11.25571 -11.15206 -11.09829 -10.89267 -10.69494 -10.27843 -10.06434 -8.67042 -8.33756 -6.12413 -1.78832 -0.64344 -0.09108 1.15440 1.29850 1.41923 1.42996 1.55149 1.69504 2.00370 2.14959 2.28763 2.96551 2.99782 3.09500 3.32830 3.50378 3.71810 3.82394 3.84439 3.89879 3.98456 4.08458 4.27241 4.37840 4.61337 4.62573 4.75206 4.78328 4.94418 4.98378 5.21984 5.43051 5.55953 6.21607 6.83684 7.06818 8.76131 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.022743 B = 0.003049 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.838877 B = 9182.124107 C =10105.281532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.603 4.603 2 S 2.386 3.614 3 O -0.976 6.976 4 N -1.139 6.139 5 C 0.568 3.432 6 O -0.594 6.594 7 C -0.101 4.101 8 S -0.157 6.157 9 C -0.546 4.546 10 H 0.080 0.920 11 C 0.013 3.987 12 N -0.911 5.911 13 Si 1.002 2.998 14 H -0.259 1.259 15 H -0.270 1.270 16 H -0.273 1.273 17 C -0.534 4.534 18 C -0.042 4.042 19 C -0.089 4.089 20 C -0.080 4.080 21 C 0.073 3.927 22 F -0.138 7.138 23 C -0.064 4.064 24 H 0.168 0.832 25 H 0.128 0.872 26 H 0.174 0.826 27 H 0.096 0.904 28 H 0.112 0.888 29 H 0.272 0.728 30 H 0.167 0.833 31 H 0.192 0.808 32 H 0.181 0.819 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.704 -7.318 32.255 33.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.761 4.761 2 S 2.590 3.410 3 O -0.963 6.963 4 N -1.045 6.045 5 C 0.355 3.645 6 O -0.476 6.476 7 C -0.255 4.255 8 S 0.070 5.930 9 C -0.693 4.693 10 H 0.098 0.902 11 C -0.192 4.192 12 N -0.547 5.547 13 Si 0.824 3.176 14 H -0.183 1.183 15 H -0.195 1.195 16 H -0.198 1.198 17 C -0.633 4.633 18 C -0.063 4.063 19 C -0.107 4.107 20 C -0.099 4.099 21 C 0.052 3.948 22 F -0.116 7.116 23 C -0.084 4.084 24 H 0.186 0.814 25 H 0.147 0.853 26 H 0.192 0.808 27 H 0.114 0.886 28 H 0.130 0.870 29 H 0.081 0.919 30 H 0.185 0.815 31 H 0.210 0.790 32 H 0.198 0.802 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.023 -5.468 31.863 32.345 hybrid contribution 0.658 -1.698 -1.075 2.115 sum -0.365 -7.166 30.788 31.613 Atomic orbital electron populations 1.29995 1.17153 1.14909 1.14070 1.09135 0.81216 0.72932 0.77688 1.93454 1.74451 1.41786 1.86624 1.70116 1.61008 1.62500 1.10922 1.19148 0.76339 0.81978 0.87064 1.90810 1.41873 1.26043 1.88835 1.23091 1.04795 1.03399 0.94188 1.85377 1.72430 1.38573 0.96661 1.23221 1.40112 1.12878 0.93127 0.90191 1.26167 0.95161 0.97353 1.00497 1.70194 1.39260 1.26726 1.18532 0.84861 0.78084 0.77822 0.76861 1.18253 1.19481 1.19826 1.27604 1.20915 1.03648 1.11172 1.21447 0.92922 1.01752 0.90131 1.21629 0.96451 0.93121 0.99538 1.22050 0.94934 0.95685 0.97207 1.17854 1.03301 0.78081 0.95555 1.91556 1.92601 1.30423 1.97040 1.21104 0.95211 0.92418 0.99675 0.81374 0.85315 0.80764 0.88580 0.86982 0.91923 0.81530 0.79046 0.80183 0.82111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.60 -9.55 10.54 113.37 1.19 -8.35 16 2 S 2.39 58.79 3.84 -56.49 -0.22 58.57 16 3 O -0.98 -34.15 17.32 -138.58 -2.40 -36.55 16 4 N -1.14 -38.50 9.69 -176.98 -1.71 -40.22 16 5 C 0.57 25.29 7.43 88.02 0.65 25.95 16 6 O -0.59 -29.66 13.97 6.57 0.09 -29.57 16 7 C -0.10 -4.84 6.23 71.24 0.44 -4.39 16 8 S -0.16 -9.48 20.57 -56.49 -1.16 -10.64 16 9 C -0.55 -33.28 9.50 67.96 0.65 -32.64 16 10 H 0.08 4.61 7.80 -2.91 -0.02 4.58 16 11 C 0.01 0.76 5.49 84.86 0.47 1.23 16 12 N -0.91 -57.88 13.22 21.65 0.29 -57.59 16 13 Si 1.00 45.60 29.55 68.60 2.03 47.63 16 14 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 15 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 17 C -0.53 -8.09 5.89 22.26 0.13 -7.96 16 18 C -0.04 -0.39 9.58 22.27 0.21 -0.18 16 19 C -0.09 -0.34 10.04 22.26 0.22 -0.11 16 20 C -0.08 -0.45 10.03 22.31 0.22 -0.23 16 21 C 0.07 0.90 7.30 22.37 0.16 1.06 16 22 F -0.14 -2.10 17.27 44.97 0.78 -1.32 16 23 C -0.06 -0.96 9.53 22.31 0.21 -0.75 16 24 H 0.17 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.13 3.00 6.99 -2.39 -0.02 2.98 16 26 H 0.17 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.10 4.48 8.14 -2.39 -0.02 4.46 16 28 H 0.11 4.85 8.14 -2.40 -0.02 4.83 16 29 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 30 H 0.17 0.99 7.98 -2.91 -0.02 0.97 16 31 H 0.19 -0.78 8.06 -2.91 -0.02 -0.80 16 32 H 0.18 -0.09 8.06 -2.91 -0.02 -0.12 16 33 H 0.16 2.48 7.75 -2.91 -0.02 2.46 16 Total: -1.00 -95.04 325.84 3.40 -91.64 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: 1.14 Total: 4.42 kcal Atomic # 6 Polarization: -30.95 SS G_CDS: 4.57 Total: -26.38 kcal Atomic # 7 Polarization: -96.38 SS G_CDS: -1.43 Total: -97.81 kcal Atomic # 8 Polarization: -63.80 SS G_CDS: -2.31 Total: -66.11 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.78 Total: -1.32 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Atomic # 16 Polarization: 49.32 SS G_CDS: -1.38 Total: 47.94 kcal Total: -95.04 3.40 -91.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906343757.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.281 kcal (2) G-P(sol) polarization free energy of solvation -95.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds