Wall clock time and date at job start Tue Mar 31 2020 11:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 115.54886 * 2 1 4 4 O 1.21282 * 120.00287 * 98.86407 * 3 2 1 5 5 N 1.34777 * 120.00126 * 278.86003 * 3 2 1 6 6 C 1.47431 * 125.64813 * 355.08629 * 5 3 2 7 7 C 1.55390 * 104.87237 * 204.09726 * 6 5 3 8 8 C 1.55154 * 101.36861 * 323.01532 * 7 6 5 9 9 O 1.42901 * 110.71872 * 277.04491 * 8 7 6 10 10 C 1.50693 * 110.72215 * 153.94918 * 8 7 6 11 11 H 1.08007 * 119.99979 * 243.84356 * 10 8 7 12 12 C 1.37880 * 120.00175 * 63.84213 * 10 8 7 13 13 N 1.31511 * 119.99795 * 0.02562 * 12 10 8 14 14 Si 1.86799 * 120.00060 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.46877 * 89.99965 * 14 12 10 16 16 H 1.48495 * 109.47013 * 209.99976 * 14 12 10 17 17 H 1.48503 * 109.47301 * 330.00125 * 14 12 10 18 18 C 1.47023 * 125.64909 * 175.04557 * 5 3 2 19 19 C 1.52998 * 117.49680 * 214.33288 * 2 1 3 20 20 C 1.53002 * 60.00073 * 252.48625 * 19 2 1 21 21 H 1.09001 * 117.49834 * 107.48764 * 20 19 2 22 22 Br 1.96597 * 117.49670 * 252.51376 * 20 19 2 23 23 H 1.08998 * 109.47230 * 65.21218 * 1 2 3 24 24 H 1.09008 * 109.47327 * 185.21317 * 1 2 3 25 25 H 1.09007 * 109.47147 * 305.20945 * 1 2 3 26 26 H 1.09002 * 110.36575 * 322.92622 * 6 5 3 27 27 H 1.08990 * 110.36646 * 85.14505 * 6 5 3 28 28 H 1.09000 * 111.18476 * 204.97516 * 7 6 5 29 29 H 1.09005 * 111.02163 * 80.98305 * 7 6 5 30 30 H 0.96700 * 114.00024 * 296.15515 * 9 8 7 31 31 H 0.97001 * 119.99971 * 180.02562 * 13 12 10 32 32 H 1.08999 * 109.88450 * 59.56043 * 18 5 3 33 33 H 1.08994 * 109.88280 * 298.38754 * 18 5 3 34 34 H 1.09002 * 117.50024 * 359.97316 * 19 2 1 35 35 H 1.09004 * 117.50089 * 144.99706 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3596 0.0000 4 8 2.5875 1.8369 1.0378 5 7 2.3083 2.0451 -1.1533 6 6 1.9530 1.5455 -2.4940 7 6 2.8225 2.3806 -3.4743 8 6 2.8120 3.7703 -2.7844 9 8 1.6269 4.4937 -3.1226 10 6 4.0406 4.5597 -3.1566 11 1 4.7583 4.8318 -2.3968 12 6 4.2484 4.9345 -4.4671 13 7 3.3742 4.6035 -5.3922 14 14 5.7717 5.9123 -4.9286 15 1 6.8711 4.9786 -5.2816 16 1 5.4676 6.7819 -6.0932 17 1 6.1873 6.7537 -3.7776 18 6 2.8253 3.4154 -1.2825 19 6 2.2364 -1.1207 -0.7654 20 6 2.2369 -1.1210 0.7646 21 1 1.6119 -1.8587 1.2679 22 35 3.9237 -0.6774 1.6718 23 1 -0.3633 0.4308 -0.9330 24 1 -0.3634 -1.0235 0.0934 25 1 -0.3634 0.5926 0.8397 26 1 2.1955 0.4863 -2.5807 27 1 0.8936 1.7088 -2.6912 28 1 2.3643 2.4313 -4.4620 29 1 3.8353 1.9822 -3.5352 30 1 1.5519 4.7084 -4.0624 31 1 3.5206 4.8669 -6.3142 32 1 3.8443 3.4649 -0.8990 33 1 2.1860 4.1061 -0.7328 34 1 1.6111 -1.8583 -1.2686 35 1 3.1713 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911526479.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:14 Heat of formation + Delta-G solvation = -51.920128 kcal Electronic energy + Delta-G solvation = -19700.770413 eV Core-core repulsion = 16553.072543 eV Total energy + Delta-G solvation = -3147.697870 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 317.041 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.00422 -37.76039 -36.43434 -34.29903 -32.20109 -30.45401 -29.62613 -28.41756 -28.29836 -25.45497 -23.32690 -22.16108 -21.48079 -19.59684 -18.33908 -17.21192 -16.48180 -15.59244 -15.27184 -15.02457 -14.84173 -14.20436 -13.39619 -13.37611 -13.09734 -12.92618 -12.58257 -12.07956 -11.87700 -11.77250 -11.69323 -11.46497 -11.36473 -11.18622 -10.87902 -10.67379 -10.61262 -10.50241 -10.13022 -9.72844 -9.57485 -9.41488 -9.08103 -8.68600 -8.23186 -7.97040 -6.31099 -4.38038 1.66238 2.97954 3.12151 3.19086 3.26649 3.31441 3.56160 4.25675 4.34251 4.40241 4.62150 4.91434 4.98968 5.29956 5.43682 5.52686 5.58234 5.58762 5.69927 5.78746 5.91006 5.97367 6.02827 6.22987 6.44033 6.69615 6.89694 6.95900 7.27928 7.32706 7.71769 7.99768 8.10476 8.61365 8.65638 9.29452 9.39725 10.76660 Molecular weight = 317.04amu Principal moments of inertia in cm(-1) A = 0.022787 B = 0.004344 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.458807 B = 6443.827995 C = 7059.208244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.127 4.127 3 C 0.551 3.449 4 O -0.526 6.526 5 N -0.601 5.601 6 C 0.095 3.905 7 C -0.135 4.135 8 C 0.247 3.753 9 O -0.586 6.586 10 C -0.534 4.534 11 H 0.064 0.936 12 C 0.073 3.927 13 N -0.898 5.898 14 Si 0.902 3.098 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.272 1.272 18 C 0.125 3.875 19 C -0.143 4.143 20 C -0.101 4.101 21 H 0.141 0.859 22 Br -0.100 7.100 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.384 0.616 31 H 0.268 0.732 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.116 0.884 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.264 -13.981 6.798 16.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.132 4.132 3 C 0.337 3.663 4 O -0.403 6.403 5 N -0.334 5.334 6 C -0.028 4.028 7 C -0.174 4.174 8 C 0.207 3.793 9 O -0.396 6.396 10 C -0.572 4.572 11 H 0.082 0.918 12 C -0.130 4.130 13 N -0.537 5.537 14 Si 0.730 3.270 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.197 1.197 18 C 0.003 3.997 19 C -0.181 4.181 20 C -0.198 4.198 21 H 0.159 0.841 22 Br -0.018 7.018 23 H 0.092 0.908 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.105 0.895 29 H 0.085 0.915 30 H 0.235 0.765 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.134 0.866 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.607 -13.636 8.202 16.316 hybrid contribution 0.545 0.356 -1.204 1.369 sum -3.062 -13.280 6.998 15.319 Atomic orbital electron populations 1.21268 0.89149 1.02637 1.03462 1.21680 0.96751 0.90206 1.04540 1.18796 0.79582 0.84946 0.82956 1.90723 1.49102 1.69195 1.31259 1.48508 1.62289 1.16353 1.06240 1.22612 0.99635 0.97966 0.82546 1.23385 0.98499 0.97301 0.98201 1.19446 0.84605 0.88053 0.87178 1.86112 1.43794 1.77442 1.32224 1.21540 1.06254 1.35445 0.93995 0.91760 1.24975 0.96884 0.95022 0.96093 1.69636 1.35753 1.46330 1.02011 0.86417 0.82482 0.79937 0.78179 1.20473 1.20999 1.19666 1.22074 0.98489 0.80501 0.98635 1.23538 1.03277 0.99791 0.91495 1.25650 0.94991 1.03131 0.96061 0.84110 1.97402 1.29803 1.94947 1.79691 0.90785 0.91412 0.91251 0.92020 0.92090 0.89489 0.91505 0.76502 0.92171 0.90981 0.92161 0.86577 0.86978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.71 37.16 0.36 -0.80 16 2 C -0.13 -1.71 1.85 -155.66 -0.29 -1.99 16 3 C 0.55 10.12 6.51 -10.99 -0.07 10.05 16 4 O -0.53 -11.31 15.59 5.56 0.09 -11.22 16 5 N -0.60 -11.62 3.33 -170.21 -0.57 -12.18 16 6 C 0.10 1.65 6.64 -2.26 -0.02 1.64 16 7 C -0.14 -2.83 5.61 -24.32 -0.14 -2.97 16 8 C 0.25 5.86 0.85 -89.94 -0.08 5.79 16 9 O -0.59 -14.47 13.07 -35.23 -0.46 -14.94 16 10 C -0.53 -13.84 8.21 -34.44 -0.28 -14.12 16 11 H 0.06 1.69 7.55 -52.48 -0.40 1.29 16 12 C 0.07 1.84 5.28 -17.82 -0.09 1.75 16 13 N -0.90 -22.66 10.67 55.43 0.59 -22.07 16 14 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 15 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 C 0.12 2.79 6.22 -3.06 -0.02 2.77 16 19 C -0.14 -1.56 8.14 -26.73 -0.22 -1.78 16 20 C -0.10 -1.22 6.65 -26.73 -0.18 -1.39 16 21 H 0.14 1.30 8.14 -51.93 -0.42 0.87 16 22 Br -0.10 -1.49 31.82 -68.01 -2.16 -3.66 16 23 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.07 0.53 8.09 -51.92 -0.42 0.11 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.90 5.90 -51.93 -0.31 0.59 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.09 1.89 7.64 -51.93 -0.40 1.49 16 29 H 0.07 1.44 8.04 -51.93 -0.42 1.03 16 30 H 0.38 9.51 7.23 45.56 0.33 9.84 16 31 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 32 H 0.07 1.67 7.65 -51.93 -0.40 1.27 16 33 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 34 H 0.12 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.11 1.38 7.72 -51.93 -0.40 0.98 16 LS Contribution 307.90 15.07 4.64 4.64 Total: -1.00 -28.33 307.90 -7.98 -36.32 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -4.07 Total: 9.06 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -1.02 Total: -1.06 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.02 Total: -34.25 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.37 Total: -26.16 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 35 Polarization: -1.49 SS G_CDS: -2.16 Total: -3.66 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.33 -7.98 -36.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911526479.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.604 kcal (2) G-P(sol) polarization free energy of solvation -28.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds